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A Refined Model of the HCV NS5A Protein Bound to Daclatasvir Explains Drug-Resistant Mutations and Activity against Divergent Genotypes

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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1097-0282(199603)38:3<305::aid-bip4>3.0.co;2-yopenalex-snapshot
Reduced surface: An efficient way to compute molecular surfaces
inferredcites →https://doi.org/10.1002/hep.24594openalex-snapshot
Genotypic and phenotypic analysis of variants resistant to hepatitis C virus nonstructural protein 5A replication complex inhibitor BMS-790052 in Humans: In Vitro and In Vivo Correlations
inferredcites →https://doi.org/10.1002/hep.510280433openalex-snapshot
Mutations in the interferon-sensitivity determining region of hepatitis C virus and transcriptional activity of the nonstructural region 5A protein
inferredcites →https://doi.org/10.1002/jcc.20035openalex-snapshot
Development and testing of a general amber force field
inferredcites →https://doi.org/10.1002/jcc.21366openalex-snapshot
How to obtain statistically converged MM/GBSA results
inferredcites →https://doi.org/10.1002/jmr.2266openalex-snapshot
Latest developments in molecular docking: 2010–2011 in review
inferredcites →https://doi.org/10.1002/prot.10028openalex-snapshot
Automated docking to multiple target structures: Incorporation of protein mobility and structural water heterogeneity in AutoDock
inferredcites →https://doi.org/10.1002/prot.21123openalex-snapshot
Comparison of multiple Amber force fields and development of improved protein backbone parameters
inferredcites →https://doi.org/10.1006/jcph.1999.6201openalex-snapshot
NAMD2: Greater Scalability for Parallel Molecular Dynamics
inferredcites →https://doi.org/10.1016/j.bmcl.2012.05.039openalex-snapshot
Synthesis and evaluation of novel potent HCV NS5A inhibitors
inferredcites →https://doi.org/10.1016/j.bmcl.2013.02.023openalex-snapshot
Synthesis and evaluation of non-dimeric HCV NS5A inhibitors
inferredcites →https://doi.org/10.1016/j.bmcl.2013.04.009openalex-snapshot
Discovery of pyrido[2,3-d]pyrimidine-based inhibitors of HCV NS5A
inferredcites →https://doi.org/10.1016/j.cbi.2013.12.001openalex-snapshot
QSAR, docking, dynamic simulation and quantum mechanics studies to explore the recognition properties of cholinesterase binding sites
inferredcites →https://doi.org/10.1016/j.chembiol.2010.05.019openalex-snapshot
Discovery and Characterization of the Laulimalide-Microtubule Binding Mode by Mass Shift Perturbation Mapping
inferredcites →https://doi.org/10.1016/j.compbiolchem.2013.10.006openalex-snapshot
Computational simulation of ligand docking to L-type pyruvate kinase subunit
inferredcites →https://doi.org/10.1016/j.coviro.2013.06.014openalex-snapshot
Antiviral activity and resistance of HCV NS5A replication complex inhibitors
inferredcites →https://doi.org/10.1016/j.jhep.2013.03.030openalex-snapshot
NS5A inhibitors in the treatment of hepatitis C
inferredcites →https://doi.org/10.1016/j.jmgm.2009.12.003openalex-snapshot
Ensemble-based virtual screening reveals dual-inhibitors for the p53–MDM2/MDMX interactions
inferredcites →https://doi.org/10.1016/j.jmgm.2010.12.003openalex-snapshot
Relaxed complex scheme suggests novel inhibitors for the lyase activity of DNA polymerase beta
inferredcites →https://doi.org/10.1016/j.saa.2013.08.013openalex-snapshot
Exploring the site-selective binding of jatrorrhizine to human serum albumin: Spectroscopic and molecular modeling approaches
inferredcites →https://doi.org/10.1016/j.steroids.2013.11.017openalex-snapshot
Structural insights into Estrogen Related Receptor-β modulation: 4-Methylenesterols from Theonella swinhoei sponge as the first example of marine natural antagonists
inferredcites →https://doi.org/10.1016/j.virusres.2012.09.007openalex-snapshot
Small molecule inhibitors of the hepatitis C virus-encoded NS5A protein
inferredcites →https://doi.org/10.1021/ar000033jopenalex-snapshot
Calculating Structures and Free Energies of Complex Molecules: Combining Molecular Mechanics and Continuum Models
inferredcites →https://doi.org/10.1021/ci4003969openalex-snapshot
Detailed Computational Study of the Active Site of the Hepatitis C Viral RNA Polymerase to Aid Novel Drug Design
inferredcites →https://doi.org/10.1021/ct700119mopenalex-snapshot
Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms
inferredcites →https://doi.org/10.1021/jp3059992openalex-snapshot
LIPID11: A Modular Framework for Lipid Simulations Using Amber
inferredcites →https://doi.org/10.1021/mp4003893openalex-snapshot
A Computational Model for Overcoming Drug Resistance Using Selective Dual-Inhibitors for Aurora Kinase A and Its T217D Variant
inferredcites →https://doi.org/10.1038/ajg.2013.205openalex-snapshot
A Translational Study of Resistance Emergence Using Sequential Direct-Acting Antiviral Agents for Hepatitis C Using Ultra-Deep Sequencing
inferredcites →https://doi.org/10.1038/nature03580openalex-snapshot
Structure of the zinc-binding domain of an essential component of the hepatitis C virus replicase
inferredcites →https://doi.org/10.1038/nature08960openalex-snapshot
Chemical genetics strategy identifies an HCV NS5A inhibitor with a potent clinical effect
inferredcites →https://doi.org/10.1039/9781849737814openalex-snapshot
Successful Strategies for the Discovery of Antiviral Drugs
inferredcites →https://doi.org/10.1053/jhep.2002.30531openalex-snapshot
New therapeutic strategies for hepatitis C
inferredcites →https://doi.org/10.1056/nejmoa1012912openalex-snapshot
Telaprevir for Previously Untreated Chronic Hepatitis C Virus Infection
inferredcites →https://doi.org/10.1073/pnas.1203110110openalex-snapshot
Modeling shows that the NS5A inhibitor daclatasvir has two modes of action and yields a shorter estimate of the hepatitis C virus half-life
inferredcites →https://doi.org/10.1074/jbc.m404761200openalex-snapshot
Structure and Function of the Membrane Anchor Domain of Hepatitis C Virus Nonstructural Protein 5A
inferredcites →https://doi.org/10.1093/nar/gkm276openalex-snapshot
PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations
inferredcites →https://doi.org/10.1109/tpami.1979.4766909openalex-snapshot
A Cluster Separation Measure
inferredcites →https://doi.org/10.1111/j.1747-0285.2012.01340.xopenalex-snapshot
Discovery of Small Molecule Inhibitors that Interact with γ‐Tubulin
inferredcites →https://doi.org/10.1124/mol.112.082347openalex-snapshot
Small Molecule Inhibitors of ERCC1-XPF Protein-Protein Interaction Synergize Alkylating Agents in Cancer Cells
inferredcites →https://doi.org/10.1128/aac.00556-10openalex-snapshot
Resistance Analysis of the Hepatitis C Virus NS5A Inhibitor BMS-790052 in an In Vitro Replicon System
inferredcites →https://doi.org/10.1128/aac.02193-12openalex-snapshot
Characterization of Hepatitis C Virus Resistance from a Multiple-Dose Clinical Trial of the Novel NS5A Inhibitor GS-5885
inferredcites →https://doi.org/10.1128/jvi.00215-11openalex-snapshot
Small Molecules Targeting Hepatitis C Virus-Encoded NS5A Cause Subcellular Redistribution of Their Target: Insights into Compound Modes of Action
inferredcites →https://doi.org/10.1128/jvi.00253-11openalex-snapshot
Distinct Functions of NS5A in Hepatitis C Virus RNA Replication Uncovered by Studies with the NS5A Inhibitor BMS-790052
inferredcites →https://doi.org/10.1128/jvi.02352-08openalex-snapshot
Crystal Structure of a Novel Dimeric Form of NS5A Domain I Protein from Hepatitis C Virus
inferredcites →https://doi.org/10.1371/journal.pone.0027651openalex-snapshot
Effects of Temperature on the p53-DNA Binding Interactions and Their Dynamical Behavior: Comparing the Wild Type to the R248Q Mutant
inferredcites →https://doi.org/10.1371/journal.pone.0051329openalex-snapshot
Virtual Screening and Biological Evaluation of Inhibitors Targeting the XPA-ERCC1 Interaction
inferredcites →https://doi.org/10.2174/157489108784746597openalex-snapshot
NS5A - From Obscurity to New Target for HCV Therapy
inferredcites →https://doi.org/10.4018/978-1-60960-491-2openalex-snapshot
Handbook of Research on Computational and Systems Biology: Interdisciplinary Applications

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4758294openalex-extracted
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inferred← citeshttps://doi.org/10.1002/ardp.201800017openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jcb.28581openalex-snapshot
Review on chemogenomic approaches towards hepatitis C viral targets
inferred← citeshttps://doi.org/10.1002/jmv.25357openalex-snapshot
Perspectives towards antiviral drug discovery against Ebola virus
inferred← citeshttps://doi.org/10.1002/med.21554openalex-snapshot
Evolution of efficacious pangenotypic hepatitis C virus therapies
inferred← citeshttps://doi.org/10.1002/wcms.1306openalex-snapshot
Molecular ‘time‐machines’ to unravel key biological events for drug design
inferred← citeshttps://doi.org/10.1007/7355_2018_47openalex-snapshot
The Discovery and Development of Daclatasvir: An Inhibitor of the Hepatitis C Virus NS5A Replication Complex
inferred← citeshttps://doi.org/10.1007/978-4-431-56098-2_1openalex-snapshot
Towards the Control of Hepatitis C
inferred← citeshttps://doi.org/10.1007/s00894-022-05420-4openalex-snapshot
Studies of the symmetric binding mode of daclatasvir and analogs using a new homology model of HCV NS5A GT-4a
inferred← citeshttps://doi.org/10.1007/s10337-016-3157-2openalex-snapshot
Development and Validation of the Chiral HPLC Method for Daclatasvir in Gradient Elution Mode on Amylose-Based Immobilized Chiral Stationary Phase
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.12406-0openalex-snapshot
Direct-Acting Antiviral Agents for the Treatment of Hepatitis C Virus Infection
inferred← citeshttps://doi.org/10.1016/j.bioorg.2020.104089openalex-snapshot
Symmetric benzidine derivatives as anti-HCV agents: Insight into the nature, stereochemistry of the capping amino acid and the size of the terminal capping carbamates
inferred← citeshttps://doi.org/10.1016/j.chroma.2020.461448openalex-snapshot
Unusual complexation behavior between daclatasvir and γ-Cyclodextrin. A multiplatform study
inferred← citeshttps://doi.org/10.1016/j.csbj.2022.06.060openalex-snapshot
Targeting non-structural proteins of Hepatitis C virus for predicting repurposed drugs using QSAR and machine learning approaches
inferred← citeshttps://doi.org/10.1016/j.drudis.2016.11.001openalex-snapshot
Molecular dynamics-driven drug discovery: leaping forward with confidence
inferred← citeshttps://doi.org/10.1016/j.jhep.2016.07.026openalex-snapshot
Future landscape of hepatitis C research – Basic, translational and clinical perspectives
inferred← citeshttps://doi.org/10.1016/j.jmgm.2015.01.015openalex-snapshot
Human PD-1 binds differently to its human ligands: A comprehensive modeling study
inferred← citeshttps://doi.org/10.1016/j.jmgm.2015.09.010openalex-snapshot
Entropy in bimolecular simulations: A comprehensive review of atomic fluctuations-based methods
inferred← citeshttps://doi.org/10.1016/j.jmgm.2016.02.010openalex-snapshot
New design of nucleotide excision repair (NER) inhibitors for combination cancer therapy
inferred← citeshttps://doi.org/10.1016/j.jmgm.2024.108842openalex-snapshot
Combining machine learning, molecular dynamics, and free energy analysis for (5HT)-2A receptor modulator classification
inferred← citeshttps://doi.org/10.1016/j.toxlet.2014.08.007openalex-snapshot
A human ether-á-go-go-related (hERG) ion channel atomistic model generated by long supercomputer molecular dynamics simulations and its use in predicting drug cardiotoxicity
inferred← citeshttps://doi.org/10.1016/j.virol.2014.12.018openalex-snapshot
Daclatasvir inhibits hepatitis C virus NS5A motility and hyper-accumulation of phosphoinositides
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.6b01234openalex-snapshot
Discovery of Chromane Containing Hepatitis C Virus (HCV) NS5A Inhibitors with Improved Potency against Resistance-Associated Variants
inferred← citeshttps://doi.org/10.1021/acsinfecdis.6b00113openalex-snapshot
A Comprehensive Computational Analysis for the Binding Modes of Hepatitis C Virus NS5A Inhibitors: The Question of Symmetry
inferred← citeshttps://doi.org/10.1021/jm501291copenalex-snapshot
Asymmetric Binding to NS5A by Daclatasvir (BMS-790052) and Analogs Suggests Two Novel Modes of HCV Inhibition
inferred← citeshttps://doi.org/10.1038/nrgastro.2016.60openalex-snapshot
Direct-acting antiviral agents for hepatitis C: structural and mechanistic insights
inferred← citeshttps://doi.org/10.1038/s41598-024-80082-1openalex-snapshot
Computational design of potent dimeric phenylthiazole NS5A inhibitors for hepatitis C virus
inferred← citeshttps://doi.org/10.1080/07391102.2021.1930162openalex-snapshot
A ‘deep dive’ into the SARS-Cov-2 polymerase assembly: identifying novel allosteric sites and analyzing the hydrogen bond networks and correlated dynamics
inferred← citeshttps://doi.org/10.1080/1062936x.2020.1740889openalex-snapshot
QSAR studies on hepatitis C virus NS5A protein tetracyclic inhibitors in wild type and mutants by CoMFA and CoMSIA
inferred← citeshttps://doi.org/10.1080/17460441.2017.1291628openalex-snapshot
Applications of computer-aided approaches in the development of hepatitis C antiviral agents
inferred← citeshttps://doi.org/10.1097/md.0000000000026312openalex-snapshot
Efficacy and safety of danoprevir plus sofosbuvir in GT 1, 2, 3, or 6 chronic hepatitis C patients with or without cirrhosis in China
inferred← citeshttps://doi.org/10.1099/jgv.0.001000openalex-snapshot
Self-association and conformational variation of NS5A domain 1 of hepatitis C virus
inferred← citeshttps://doi.org/10.1128/aac.01269-19openalex-snapshot
Interplay of Amino Acid Residues at Positions 28 and 31 in NS5A Defines Resistance Pathways in Hepatitis C Virus Genotype 2
inferred← citeshttps://doi.org/10.1128/aac.02639-15openalex-snapshot
Synergistic Activity of Combined NS5A Inhibitors
inferred← citeshttps://doi.org/10.1128/aac.03293-14openalex-snapshot
NS5A Inhibitors Impair NS5A–Phosphatidylinositol 4-Kinase IIIα Complex Formation and Cause a Decrease of Phosphatidylinositol 4-Phosphate and Cholesterol Levels in Hepatitis C Virus-Associated Membranes
inferred← citeshttps://doi.org/10.1155/2016/5743521openalex-snapshot
Highlights of the Fourth Canadian Symposium on Hepatitis C: Moving towards a National Action Plan
inferred← citeshttps://doi.org/10.1186/s13065-022-00842-wopenalex-snapshot
Leveraging structural and 2D-QSAR to investigate the role of functional group substitutions, conserved surface residues and desolvation in triggering the small molecule-induced dimerization of hPD-L1
inferred← citeshttps://doi.org/10.1371/journal.pone.0251934openalex-snapshot
The combination of the NS5A and cyclophilin inhibitors results in an additive anti-HCV inhibition in humanized mice without development of resistance
inferred← citeshttps://doi.org/10.14800/rci.825openalex-snapshot
Baby Steps Toward Modelling The Full human Programmed Death-1 (PD-1) Pathway
inferred← citeshttps://doi.org/10.21248/gups.61849openalex-snapshot
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inferred← citeshttps://doi.org/10.2147/dddt.s133944openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/genes9070343openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/pr9010071openalex-snapshot
Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development
inferred← citeshttps://doi.org/10.3390/v11010030openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/v6114227openalex-snapshot
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inferred← citeshttps://doi.org/10.35170/ss.ed.9786586283082.edopenalex-snapshot
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inferred← citeshttps://doi.org/10.4172/2376-0419.1000e127openalex-snapshot
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inferred← citeshttps://doi.org/10.4172/2376-0419.1000e131openalex-snapshot
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