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Approved Drug Mimics of Short Peptide Ligands from Protein Interaction Motifs
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Molecular mechanics (MM4) vibrational frequency calculations for alkenes and conjugated hydrocarbons
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Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
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Modulation of Protein–Protein Interactions with Small Organic Molecules
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Peptides mediating interaction networks: new leads at last
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Small-molecule inhibitors of the p53 suppressor HDM2: have protein–protein interactions come of age as drug targets?
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Pharmacophore Identification, in Silico Screening, and Virtual Library Design for Inhibitors of the Human Factor Xa
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Structure-Based Pharmacophore Design and Virtual Screening for Novel Angiotensin Converting Enzyme 2 Inhibitors
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Using Pharmacophore Models To Gain Insight into Structural Binding and Virtual Screening: An Application Study with CDK2 and Human DHFR
inferredcites →https://doi.org/10.1038/415813aopenalex-snapshot
Structural basis for antagonist-mediated recruitment of nuclear co-repressors by PPARα
inferredcites →https://doi.org/10.1038/nchembio0207-83openalex-snapshot
A shortcut to peptides to modulate platelets
inferredcites →https://doi.org/10.1093/nar/gkg545openalex-snapshot
ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins
inferredcites →https://doi.org/10.1093/nar/gkj149openalex-snapshot
Pfam: clans, web tools and services
inferredcites →https://doi.org/10.1093/protein/8.2.127openalex-snapshot
LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions
inferredcites →https://doi.org/10.1110/ps.051905906openalex-snapshot
Comparison of crystal structures of human androgen receptor ligand‐binding domain complexed with various agonists reveals molecular determinants responsible for binding affinity
inferredcites →https://doi.org/10.1111/j.1538-7836.2007.02351.xopenalex-snapshot
αIIbβ3 priming and clustering by orally active and intravenous integrin antagonists
inferredcites →https://doi.org/10.1126/science.1092472openalex-snapshot
In Vivo Activation of the p53 Pathway by Small-Molecule Antagonists of MDM2
inferredcites →https://doi.org/10.1371/journal.pbio.0030405openalex-snapshot
Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks
inferredcites →https://doi.org/10.1371/journal.pone.0002524openalex-snapshot
Contextual Specificity in Peptide-Mediated Protein Interactions
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/bip.21164openalex-snapshot
Peptidic modulators of protein‐protein interactions: Progress and challenges in computational design
inferred← citeshttps://doi.org/10.1002/cbic.201500197openalex-snapshot
Peptide Fragments of Odin‐Sam1: Conformational Analysis and Interaction Studies with EphA2‐Sam
inferred← citeshttps://doi.org/10.1002/chin.200904212openalex-snapshot
ChemInform Abstract: Approved Drug Mimics of Short Peptide Ligands from Protein Interaction Motifs.
inferred← citeshttps://doi.org/10.1002/prot.22716openalex-snapshot
Sub-angstrom modeling of complexes between flexible peptides and globular proteins
inferred← citeshttps://doi.org/10.1007/978-1-0716-1855-4_11openalex-snapshot
Computational Tools and Strategies to Develop Peptide-Based Inhibitors of Protein-Protein Interactions
inferred← citeshttps://doi.org/10.1007/978-1-4939-6798-8_16openalex-snapshot
Protein-Peptide Interaction Design: PepCrawler and PinaColada
inferred← citeshttps://doi.org/10.1007/978-1-61779-588-6_17openalex-snapshot
Modeling Peptide–Protein Interactions
inferred← citeshttps://doi.org/10.1007/978-3-642-23038-7_7openalex-snapshot
PepCrawler: A Fast RRT–Like Algorithm for High–Resolution Refinement and Binding–Affinity Estimation of Peptide Inhibitors
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A network medicine approach to human disease
inferred← citeshttps://doi.org/10.1016/j.gpb.2013.03.002openalex-snapshot
PepBind: A Comprehensive Database and Computational Tool for Analysis of Protein–Peptide Interactions
inferred← citeshttps://doi.org/10.1016/j.str.2009.11.012openalex-snapshot
The Structural Basis of Peptide-Protein Binding Strategies
inferred← citeshttps://doi.org/10.1021/ci900294xopenalex-snapshot
Discovery of Small Molecule Inhibitors of Protein−Protein Interactions Using Combined Ligand and Target Score Normalization
inferred← citeshttps://doi.org/10.1021/cr400585qopenalex-snapshot
Short Linear Motifs: Ubiquitous and Functionally Diverse Protein Interaction Modules Directing Cell Regulation
inferred← citeshttps://doi.org/10.1021/jasms.4c00192openalex-snapshot
MotifQuest: An Automated Pipeline for Motif Database Creation to Improve Peptidomics Database Searching Programs
inferred← citeshttps://doi.org/10.1021/jo100272dopenalex-snapshot
Facile Iterative Synthesis of 2,5-Terpyrimidinylenes as Nonpeptidic α-Helical Mimics
inferred← citeshttps://doi.org/10.1039/c0mb00200copenalex-snapshot
Proteome-wide prediction of overlapping small molecule and protein binding sites using structure
inferred← citeshttps://doi.org/10.1080/14728222.2020.1820987openalex-snapshot
Targeting thermoTRP ion channels: in silico preclinical approaches and opportunities
inferred← citeshttps://doi.org/10.1093/bib/bbaf544openalex-snapshot
Enhancing cross-domain protein and peptide interaction with retrained deep learning models
inferred← citeshttps://doi.org/10.1093/bioinformatics/btr498openalex-snapshot
PepCrawler: a fast RRT-based algorithm for high-resolution refinement and binding affinity estimation of peptide inhibitors
inferred← citeshttps://doi.org/10.1093/bioinformatics/btw133openalex-snapshot
PinaColada: peptide–inhibitor ant colony ad-hoc design algorithm
inferred← citeshttps://doi.org/10.1093/nar/gkp893openalex-snapshot
PepX: a structural database of non-redundant protein–peptide complexes
inferred← citeshttps://doi.org/10.1093/nar/gkr1189openalex-snapshot
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences
inferred← citeshttps://doi.org/10.1093/nar/gkv580openalex-snapshot
Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution
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High-throughput Molecular Docking Now in Reach for a Wider Biochemical Community
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1000668openalex-snapshot
The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1000789openalex-snapshot
Novel Peptide-Mediated Interactions Derived from High-Resolution 3-Dimensional Structures
inferred← citeshttps://doi.org/10.1371/journal.pone.0018934openalex-snapshot
Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors
inferred← citeshttps://doi.org/10.1371/journal.pone.0045012openalex-snapshot
Towards the Improved Discovery and Design of Functional Peptides: Common Features of Diverse Classes Permit Generalized Prediction of Bioactivity
inferred← citeshttps://doi.org/10.1371/journal.pone.0106081openalex-snapshot
Fast and Accurate Discovery of Degenerate Linear Motifs in Protein Sequences
inferred← citeshttps://doi.org/10.1371/journal.pone.0152731openalex-snapshot
The Functional Human C-Terminome
inferred← citeshttps://doi.org/10.2147/dddt.s159767openalex-snapshot
Computer-aided design of amino acid-based therapeutics: a review
inferred← citeshttps://doi.org/10.2174/0929867311320150005openalex-snapshot
Computational Peptidology: A New and Promising Approach to Therapeutic Peptide Design
inferred← citeshttps://doi.org/10.3389/fgene.2021.816131openalex-snapshot
Network Analyses Based on Machine Learning Methods to Quantify Effects of Peptide–Protein Complexes as Drug Targets Using Cinnamon in Cardiovascular Diseases and Metabolic Syndrome as a Case Study
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