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Dynamics of Water Clusters Confined in Proteins: A Molecular Dynamics Simulation Study of Interfacial Waters in a Dimeric Hemoglobin

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Dimeric and tetrameric hemoglobins from the mollusc Scapharca inaequivalvis
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Intramolecular Signaling Pathways Revealed by Modeling Anisotropic Thermal Diffusion
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Combining THz spectroscopy and MD simulations to study protein-hydration coupling
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The Dynamics of Protein Hydration Water: A Quantitative Comparison of Molecular Dynamics Simulations and Neutron-scattering Experiments
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Diffusion of Solvent around Biomolecular Solutes: A Molecular Dynamics Simulation Study
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Cooperativity in Scapharca Dimeric Hemoglobin: Simulation of Binding Intermediates and Elucidation of the Role of Interfacial Water
inferredcites →https://doi.org/10.1021/bi011071topenalex-snapshot
Restricting the Ligand-Linked Heme Movement in Scapharca Dimeric Hemoglobin Reveals Tight Coupling between Distal and Proximal Contributions to Cooperativity
inferredcites →https://doi.org/10.1021/bi7016798openalex-snapshot
Ligand Migration and Binding in the Dimeric Hemoglobin ofScapharca inaequivalvis,
inferredcites →https://doi.org/10.1021/cr020661+openalex-snapshot
Water Dynamics in the Hydration Layer around Proteins and Micelles
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Water as an Active Constituent in Cell Biology
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Water Rotational Relaxation and Diffusion in Hydrated Lysozyme
inferredcites →https://doi.org/10.1021/ja0746520openalex-snapshot
Protein Sequence- and pH-Dependent Hydration Probed by Terahertz Spectroscopy
inferredcites →https://doi.org/10.1021/ja0781083openalex-snapshot
Long-Range Influence of Carbohydrates on the Solvation Dynamics of Water—Answers from Terahertz Absorption Measurements and Molecular Modeling Simulations
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Proteins: Energy, Heat, and Signal Flow
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Antifreeze Glycoprotein Activity Correlates with Long-Range Protein−Water Dynamics
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Free Energies and Entropies of Water Molecules at the Inhibitor−Protein Interface of DNA Gyrase
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Rattling in the Cage: Ions as Probes of Sub-picosecond Water Network Dynamics
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Hydrogen-Bond Kinetics in the Solvation Shell of a Polypeptide
inferredcites →https://doi.org/10.1021/jp020100mopenalex-snapshot
Molecular Dynamics of Water at the Protein−Solvent Interface
inferredcites →https://doi.org/10.1021/jp026462bopenalex-snapshot
Vibrational Energy Transfer and Heat Conduction in a Protein
inferredcites →https://doi.org/10.1021/jp035471xopenalex-snapshot
Thermodynamics of Protein Hydration Computed by Molecular Dynamics and Normal Modes
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Dynamics of Water Confined in the Interdomain Region of a Multidomain Protein
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Testing the Core/Shell Model of Nanoconfined Water in Reverse Micelles Using Linear and Nonlinear IR Spectroscopy
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Hydration Behavior under Confinement by Nanoscale Surfaces with Patterned Hydrophobicity and Hydrophilicity
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Anisotropic Structural Relaxation and Its Correlation with the Excess Energy Diffusion in the Incipient Process of Photodissociated MbCO: High-Resolution Analysis via Ensemble Perturbation Method
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Nanoscale Dewetting Transition in Protein Complex Folding
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How Protein Surfaces Induce Anomalous Dynamics of Hydration Water
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Ferroelectric Hydration Shells around Proteins: Electrostatics of the Protein−Water Interface
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Free Energy, Entropy, and Enthalpy of a Water Molecule in Various Protein Environments
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Influence of Hydrostatic Pressure on Dynamics and Spatial Distribution of Protein Partial Molar Volume: Time-Resolved Surficial Kirkwood-Buff Approach
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Effects of an Unnatural Base Pair Replacement on the Structure and Dynamics of DNA and Neighboring Water and Ions
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Hydration Water Dynamics Near Biological Interfaces
inferredcites →https://doi.org/10.1021/jp8072969openalex-snapshot
Simulations of Infrared Spectra of Nanoconfined Liquids: Acetonitrile Confined in Nanoscale, Hydrophilic Silica Pores
inferredcites →https://doi.org/10.1021/jp9048082openalex-snapshot
Dimensionality of Diffusive Exploration at the Protein Interface in Solution
inferredcites →https://doi.org/10.1021/jp906784topenalex-snapshot
Vibrational Spectroscopy and Dynamics of Water Confined inside Reverse Micelles
inferredcites →https://doi.org/10.1021/jz100485eopenalex-snapshot
Molecular Dynamics Simulations of DNA Solvation Dynamics
inferredcites →https://doi.org/10.1038/316277a0openalex-snapshot
Cooperative dimeric and tetrameric clam haemoglobins are novel assemblages of myoglobin folds
inferredcites →https://doi.org/10.1038/33653openalex-snapshot
Surface topography dependence of biomolecular hydrophobic hydration
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Hydrogen-bond kinetics in liquid water
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Pressure perturbation calorimetric studies of the solvation properties and the thermal unfolding of proteins in solution—experiments and theoretical interpretation
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The terahertz dance of water with the proteins: the effect of protein flexibility on the dynamical hydration shell of ubiquitin
inferredcites →https://doi.org/10.1039/b805361hopenalex-snapshot
Structural and mechanical properties of glassy water in nanoscale confinement
inferredcites →https://doi.org/10.1039/b805506hopenalex-snapshot
From shell to cell: neutron scattering studies of biological water dynamics and coupling to activity
inferredcites →https://doi.org/10.1039/b805706kopenalex-snapshot
“Similarities” between confined and supercooled water
inferredcites →https://doi.org/10.1039/b918607gopenalex-snapshot
Heat transfer in protein–water interfaces
inferredcites →https://doi.org/10.1063/1.1320826openalex-snapshot
Resolving the hydrogen bond dynamics conundrum
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Anomalous diffusion of vibrational energy in proteins
inferredcites →https://doi.org/10.1063/1.1830431openalex-snapshot
Heat flow in proteins: Computation of thermal transport coefficients
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Thermal transport coefficients for liquid and glassy water computed from a harmonic aqueous glass
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Canonical sampling through velocity rescaling
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On the influence of solute polarizability on the hydrophobic interaction
inferredcites →https://doi.org/10.1063/1.2991183openalex-snapshot
Strong frequency dependence of dynamical coupling between protein and water
inferredcites →https://doi.org/10.1063/1.3284742openalex-snapshot
Nonequilibrium molecular dynamics simulation of the energy transport through a peptide helix
inferredcites →https://doi.org/10.1063/1.328693openalex-snapshot
Polymorphic transitions in single crystals: A new molecular dynamics method
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Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems
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A smooth particle mesh Ewald method
inferredcites →https://doi.org/10.1073/pnas.0409083102openalex-snapshot
Vibrational energy relaxation in proteins
inferredcites →https://doi.org/10.1073/pnas.042697899openalex-snapshot
Biological water at the protein surface: Dynamical solvation probed directly with femtosecond resolution
inferredcites →https://doi.org/10.1073/pnas.0509411103openalex-snapshot
Allosteric action in real time: Time-resolved crystallographic studies of a cooperative dimeric hemoglobin
inferredcites →https://doi.org/10.1073/pnas.0604897103openalex-snapshot
Solute-induced retardation of water dynamics probed directly by terahertz spectroscopy
inferredcites →https://doi.org/10.1073/pnas.0607168103openalex-snapshot
Protein folding is slaved to solvent motions
inferredcites →https://doi.org/10.1073/pnas.0701762104openalex-snapshot
Energy transport in peptide helices
inferredcites →https://doi.org/10.1073/pnas.0709207104openalex-snapshot
An extended dynamical hydration shell around proteins
inferredcites →https://doi.org/10.1073/pnas.0709585105openalex-snapshot
Cell water dynamics on multiple time scales
inferredcites →https://doi.org/10.1073/pnas.93.25.14526openalex-snapshot
Ordered water molecules as key allosteric mediators in a cooperative dimeric hemoglobin
inferredcites →https://doi.org/10.1074/jbc.272.20.13171openalex-snapshot
Mutation of Residue Phe97 to Leu Disrupts the Central Allosteric Pathway in Scapharca Dimeric Hemoglobin
inferredcites →https://doi.org/10.1080/01442350600862117openalex-snapshot
Biomolecule large-amplitude motion and solvation dynamics: modelling and probes from THz to X-rays
inferredcites →https://doi.org/10.1088/0953-8984/21/50/504105openalex-snapshot
Heterogeneities in confined water and protein hydration water
inferredcites →https://doi.org/10.1103/physrevb.64.094201openalex-snapshot
Vibrational energy transfer and heat conduction in a one-dimensional glass
inferredcites →https://doi.org/10.1103/physrevb.74.184305openalex-snapshot
Thermal conductivity computed for vitreous silica and methyl-doped silica above the plateau
inferredcites →https://doi.org/10.1103/physreve.57.3315openalex-snapshot
Water dynamical anomalies evidenced by molecular-dynamics simulations at the solvent-protein interface
inferredcites →https://doi.org/10.1103/physreve.71.011912openalex-snapshot
Mass fractal dimension and the compactness of proteins
inferredcites →https://doi.org/10.1103/physreve.73.051905openalex-snapshot
Hydration dependence of the mass fractal dimension and anomalous diffusion of vibrational energy in proteins
inferredcites →https://doi.org/10.1103/physrevlett.87.188102openalex-snapshot
Vibrational Energy Transfer in Helices
inferredcites →https://doi.org/10.1103/physrevlett.88.138101openalex-snapshot
Role of Protein-Water Hydrogen Bond Dynamics in the Protein Dynamical Transition
inferredcites →https://doi.org/10.1103/physrevlett.96.087802openalex-snapshot
Coupling Hydrophobicity, Dispersion, and Electrostatics in Continuum Solvent Models
inferredcites →https://doi.org/10.1126/science.2382132openalex-snapshot
Structural Transitions Upon Ligand Binding in a Cooperative Dimeric Hemoglobin
inferredcites →https://doi.org/10.1146/annurev.biophys.32.110601.141709openalex-snapshot
Volumetric Properties of Proteins
inferredcites →https://doi.org/10.1146/annurev.physchem.59.032607.093606openalex-snapshot
Energy Flow in Proteins
inferredcites →https://doi.org/10.1201/9781420087048openalex-snapshot
Proteins
inferredcites →https://doi.org/10.1529/biophysj.105.069088openalex-snapshot
Hydration Dependence of Conformational Dielectric Relaxation of Lysozyme
inferredcites →https://doi.org/10.1529/biophysj.106.087726openalex-snapshot
Decomposition of Protein Experimental Compressibility into Intrinsic and Hydration Shell Contributions
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A Milestoning Study of the Kinetics of an Allosteric Transition: Atomically Detailed Simulations of Deoxy Scapharca Hemoglobin
inferredcites →https://doi.org/10.1529/biophysj.107.108753openalex-snapshot
Influence of Water Clustering on the Dynamics of Hydration Water at the Surface of a Lysozyme

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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