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Analysis of Water and Hydrogen Bond Dynamics at the Surface of an Antifreeze Protein

https://doi.org/10.1155/2012/125071

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling

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A point‐charge force field for molecular mechanics simulations of proteins based on condensed‐phase quantum mechanical calculations

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Anin VivoStudy of Antifreeze Protein Adjuvant Cryosurgery

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GROMACS: A message-passing parallel molecular dynamics implementation

inferredcites →https://doi.org/10.1016/0305-0491(76)90260-1openalex-snapshot

Isolation, characterization, and physical properties of protein antifreezes from the winter flounder, Pseudopleuronectes americanus

inferredcites →https://doi.org/10.1016/j.ymeth.2010.05.007openalex-snapshot

Combining THz spectroscopy and MD simulations to study protein-hydration coupling

inferredcites →https://doi.org/10.1016/s0006-3495(91)82234-2openalex-snapshot

Adsorption of alpha-helical antifreeze peptides on specific ice crystal surface planes

inferredcites →https://doi.org/10.1016/s0014-5793(98)00652-8openalex-snapshot

Valine substituted winter flounder `antifreeze': preservation of ice growth hysteresis

inferredcites →https://doi.org/10.1017/cbo9780511675997.004openalex-snapshot

Antifreeze and ice-nucleator proteins

inferredcites →https://doi.org/10.1021/cr020661+openalex-snapshot

Water Dynamics in the Hydration Layer around Proteins and Micelles

inferredcites →https://doi.org/10.1021/j100028a025openalex-snapshot

Linearity between Structural Correlation Length and Correlated-Proton Raman Intensity from Amorphous Ice and Supercooled Water up to Dense Supercritical Steam

inferredcites →https://doi.org/10.1021/ja054462uopenalex-snapshot

Secondary Structure Sensitivity of Hydrogen Bond Lifetime Dynamics in the Protein Hydration Layer

inferredcites →https://doi.org/10.1021/ja0746520openalex-snapshot

Protein Sequence- and pH-Dependent Hydration Probed by Terahertz Spectroscopy

inferredcites →https://doi.org/10.1021/ja0781083openalex-snapshot

Long-Range Influence of Carbohydrates on the Solvation Dynamics of Water—Answers from Terahertz Absorption Measurements and Molecular Modeling Simulations

inferredcites →https://doi.org/10.1021/ja1051632openalex-snapshot

Antifreeze Glycoprotein Activity Correlates with Long-Range Protein−Water Dynamics

inferredcites →https://doi.org/10.1021/ja200566uopenalex-snapshot

Dielectric Spectroscopy of Proteins as a Quantitative Experimental Test of Computational Models of Their Low-Frequency Harmonic Motions

inferredcites →https://doi.org/10.1021/ja8034027openalex-snapshot

Dual Function of the Hydration Layer around an Antifreeze Protein Revealed by Atomistic Molecular Dynamics Simulations

inferredcites →https://doi.org/10.1021/jp020100mopenalex-snapshot

Molecular Dynamics of Water at the Protein−Solvent Interface

inferredcites →https://doi.org/10.1021/jp0213506openalex-snapshot

Biological Water: Femtosecond Dynamics of Macromolecular Hydration

inferredcites →https://doi.org/10.1021/jp026462bopenalex-snapshot

Vibrational Energy Transfer and Heat Conduction in a Protein

inferredcites →https://doi.org/10.1021/jp035471xopenalex-snapshot

Thermodynamics of Protein Hydration Computed by Molecular Dynamics and Normal Modes

inferredcites →https://doi.org/10.1021/jp0746401openalex-snapshot

Low-Frequency Vibrational Spectrum of Water in the Hydration Layer of a Protein: A Molecular Dynamics Simulation Study

inferredcites →https://doi.org/10.1021/jp1006999openalex-snapshot

Ferroelectric Hydration Shells around Proteins: Electrostatics of the Protein−Water Interface

inferredcites →https://doi.org/10.1021/jp109173topenalex-snapshot

Dynamics of Water Clusters Confined in Proteins: A Molecular Dynamics Simulation Study of Interfacial Waters in a Dimeric Hemoglobin

inferredcites →https://doi.org/10.1021/jp806183vopenalex-snapshot

Hydration Water Dynamics Near Biological Interfaces

inferredcites →https://doi.org/10.1021/jp960140oopenalex-snapshot

Low-Frequency Raman Scattering from Water at High Pressures and High Temperatures

inferredcites →https://doi.org/10.1021/jp971879gopenalex-snapshot

Dielectric Relaxation of Biological Water

inferredcites →https://doi.org/10.1038/35018610openalex-snapshot

β-Helix structure and ice-binding properties of a hyperactive antifreeze protein from an insect

inferredcites →https://doi.org/10.1038/379055a0openalex-snapshot

Hydrogen-bond kinetics in liquid water

inferredcites →https://doi.org/10.1039/b516608jopenalex-snapshot

Pressure perturbation calorimetric studies of the solvation properties and the thermal unfolding of proteins in solution—experiments and theoretical interpretation

inferredcites →https://doi.org/10.1039/b804734kopenalex-snapshot

The terahertz dance of water with the proteins: the effect of protein flexibility on the dynamical hydration shell of ubiquitin

inferredcites →https://doi.org/10.1039/b918607gopenalex-snapshot

Heat transfer in protein–water interfaces

inferredcites →https://doi.org/10.1063/1.1626636openalex-snapshot

Anomalous diffusion of vibrational energy in proteins

inferredcites →https://doi.org/10.1063/1.1830431openalex-snapshot

Heat flow in proteins: Computation of thermal transport coefficients

inferredcites →https://doi.org/10.1063/1.3623423openalex-snapshot

Communication maps computed for homodimeric hemoglobin: Computational study of water-mediated energy transport in proteins

inferredcites →https://doi.org/10.1073/pnas.042697899openalex-snapshot

Biological water at the protein surface: Dynamical solvation probed directly with femtosecond resolution

inferredcites →https://doi.org/10.1073/pnas.0604897103openalex-snapshot

Solute-induced retardation of water dynamics probed directly by terahertz spectroscopy

inferredcites →https://doi.org/10.1073/pnas.0607168103openalex-snapshot

Protein folding is slaved to solvent motions

inferredcites →https://doi.org/10.1073/pnas.0709207104openalex-snapshot

An extended dynamical hydration shell around proteins

inferredcites →https://doi.org/10.1073/pnas.0709585105openalex-snapshot

Cell water dynamics on multiple time scales

inferredcites →https://doi.org/10.1073/pnas.74.6.2589openalex-snapshot

Adsorption inhibition as a mechanism of freezing resistance in polar fishes.

inferredcites →https://doi.org/10.1073/pnas.86.3.881openalex-snapshot

Inhibition of growth of nonbasal planes in ice by fish antifreezes.

inferredcites →https://doi.org/10.1073/pnas.90.19.9135openalex-snapshot

Protein hydration elucidated by molecular dynamics simulation.

inferredcites →https://doi.org/10.1080/01442350600862117openalex-snapshot

Biomolecule large-amplitude motion and solvation dynamics: modelling and probes from THz to X-rays

inferredcites →https://doi.org/10.1103/physrevb.64.094201openalex-snapshot

Vibrational energy transfer and heat conduction in a one-dimensional glass

inferredcites →https://doi.org/10.1103/physrevlett.88.138101openalex-snapshot

Role of Protein-Water Hydrogen Bond Dynamics in the Protein Dynamical Transition

inferredcites →https://doi.org/10.1103/physrevlett.93.269901openalex-snapshot

Publisher's Note: Dielectric Modulation of Biological Water [Phys. Rev. Lett.93, 228104 (2004)]

inferredcites →https://doi.org/10.1111/j.1399-3054.2006.00618.xopenalex-snapshot

Cold comfort: plant antifreeze proteins

inferredcites →https://doi.org/10.1126/science.163.3871.1073openalex-snapshot

Freezing Resistance in Some Antarctic Fishes

inferredcites →https://doi.org/10.1201/9781420087048-25openalex-snapshot

Molecular Dynamics Simulation Studies of Coupled Protein and Water Dynamics

inferredcites →https://doi.org/10.1529/biophysj.105.069088openalex-snapshot

Hydration Dependence of Conformational Dielectric Relaxation of Lysozyme

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Disorder at the Interface: Hydration Water and the Physics of Intrinsically Disordered Proteins

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inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2018.01.006openalex-snapshot

Molecular dynamics studies show solvation structure of type III antifreeze protein is disrupted at low pH

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Thermodynamics of Hydration Water around an Antifreeze Protein: A Molecular Simulation Study

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Hydrogen-Bonding and Hydrophobic Groups Contribute Equally to the Binding of Hyperactive Antifreeze and Ice-Nucleating Proteins to Ice

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Comparative study of hydration shell dynamics around a hyperactive antifreeze protein and around ubiquitin

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Dynamical aspects of supercooled TIP3P–water in the grooves of DNA

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Mechanism of antifreeze protein functioning and the “anchored clathrate water” concept

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Long-range, water-mediated interaction between a moderately active antifreeze protein molecule and the surface of ice

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Long-range protein–water dynamics in hyperactive insect antifreeze proteins

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Antifreeze protein hydration waters: Unstructured unless bound to ice

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WITHDRAWN: Structural analysis, molecular dynamics simulation and thermodynamic modification of the antifreeze protein type IV mutant under subfreezing temperatures

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