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Molecular Analysis of Tumor Margins by MALDI Mass Spectrometry in Renal Carcinoma

https://doi.org/10.1021/pr900936z
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Immobilized pH gradients as a first dimension in shotgun proteomics and analysis of the accuracy of pI predictability of peptides
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The significance of “positive” margins in surgically resected epidermoid carcinomas
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Molecular margin analysis predicts local recurrence after sublobar resection of lung cancer
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Direct tissue analysis using matrix‐assisted laser desorption/ionization mass spectrometry: practical aspects of sample preparation
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Direct analysis of drug candidates in tissue by matrix‐assisted laser desorption/ionization mass spectrometry
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Proteome analysis of human colon cancer by two‐dimensional difference gel electrophoresis and mass spectrometry
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Regression Modeling Strategies
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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
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Mitochondria and reactive oxygen species in renal cancer
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inferredcites →https://doi.org/10.1016/j.cll.2005.01.012openalex-snapshot
Clear Cell Renal Cell Carcinoma
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Lessons learned in the surgical management of renal cell carcinoma
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Proteomics in Diagnostic Pathology
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Proteomic patterns of tumour subsets in non-small-cell lung cancer
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Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search
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A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry
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Automated Acoustic Matrix Deposition for MALDI Sample Preparation
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Molecular Imaging of Biological Samples: Localization of Peptides and Proteins Using MALDI-TOF MS
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Direct Profiling of Proteins in Biological Tissue Sections by MALDI Mass Spectrometry
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Gel Based Isoelectric Focusing of Peptides and the Utility of Isoelectric Point in Protein Identification
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Molecular Profiling of Experimental Parkinson's Disease: Direct Analysis of Peptides and Proteins on Brain Tissue Sections by MALDI Mass Spectrometry
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Genomic and Proteomic Analysis of Mammary Tumors Arising in Transgenic Mice
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The VHL/HIF oxygen-sensing pathway and its relevance to kidney disease
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Molecular Assessment of Histopathological Staging in Squamous-Cell Carcinoma of the Head and Neck
inferredcites →https://doi.org/10.1073/pnas.091062498openalex-snapshot
Significance analysis of microarrays applied to the ionizing radiation response
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Statistical significance for genomewide studies
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Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis
inferredcites →https://doi.org/10.1089/end.2005.19.410openalex-snapshot
Technique for Ensuring Negative Surgical Margins during Laparoscopic Partial Nephrectomy
inferredcites →https://doi.org/10.1093/bfgp/2.3.194openalex-snapshot
Detection of renal cell carcinoma-associated markers via proteome- and other 'ome'-based analyses
inferredcites →https://doi.org/10.1093/carcin/23.5.759openalex-snapshot
Low mitochondrial respiratory chain content correlates with tumor aggressiveness in renal cell carcinoma
inferredcites →https://doi.org/10.1093/carcin/bgi001openalex-snapshot
A new role for the von Hippel-Lindau tumor suppressor protein: stimulation of mitochondrial oxidative phosphorylation complex biogenesis
inferredcites →https://doi.org/10.1097/00000478-198210000-00007openalex-snapshot
Prognostic significance of morphologic parameters in renal cell carcinoma
inferredcites →https://doi.org/10.1097/00005537-200212000-00003openalex-snapshot
Molecular Analysis of Surgical Margins in Head and Neck Squamous Cell Carcinoma Patients
inferredcites →https://doi.org/10.1097/01.jnen.0000235116.67558.24openalex-snapshot
Proteomics in Diagnostic Neuropathology
inferredcites →https://doi.org/10.1101/gad.1243304openalex-snapshot
The biology of hypoxia: the role of oxygen sensing in development, normal function, and disease
inferredcites →https://doi.org/10.1111/j.1445-2197.2006.03686.xopenalex-snapshot
SURGICAL MARGINS FOR SOFT TISSUE SARCOMA: SIZE DOES MATTER
inferredcites →https://doi.org/10.1113/expphysiol.2006.033506openalex-snapshot
Oxygen sensing by mitochondria at complex III: the paradox of increased reactive oxygen species during hypoxia
inferredcites →https://doi.org/10.1158/0008-5472.can-04-2231openalex-snapshot
Early Changes in Protein Expression Detected by Mass Spectrometry Predict Tumor Response to Molecular Therapeutics
inferredcites →https://doi.org/10.1158/0008-5472.can-04-3016openalex-snapshot
Proteomic-Based Prognosis of Brain Tumor Patients Using Direct-Tissue Matrix-Assisted Laser Desorption Ionization Mass Spectrometry
inferredcites →https://doi.org/10.1158/1078-0432.ccr-03-0631openalex-snapshot
Molecular Diagnosis of Surgical Margins and Local Recurrence in Head and Neck Cancer Patients
inferredcites →https://doi.org/10.1158/1078-0432.ccr-05-0073openalex-snapshot
Clear Cell Renal Cell Carcinoma: Gene Expression Analyses Identify a Potential Signature for Tumor Aggressiveness
inferredcites →https://doi.org/10.1158/1078-0432.ccr-0927-3openalex-snapshot
Protein Profiling in Brain Tumors Using Mass Spectrometry
inferredcites →https://doi.org/10.1164/rccm.200502-274ocopenalex-snapshot
Proteomic Patterns of Preinvasive Bronchial Lesions
inferredcites →https://doi.org/10.1177/000313480507100104openalex-snapshot
Accuracy of Intraoperative Gross Examination of Surgical Margin Status in Women Undergoing Partial Mastectomy for Breast Malignancy
inferredcites →https://doi.org/10.1200/jco.2005.04.160openalex-snapshot
Status of Surgical Margins and Prognosis in Adult Soft Tissue Sarcomas of the Extremities: A Series of Patients Treated at a Single Institution
inferredcites →https://doi.org/10.1259/bjr/12913493openalex-snapshot
Microenvironmental and cellular consequences of altered blood flow in tumours
inferredcites →https://doi.org/10.1681/asn.2005030262openalex-snapshot
Proteomic Patterns and Prediction of Glomerulosclerosis and Its Mechanisms
inferredcites →https://doi.org/10.3322/canjclin.55.1.10openalex-snapshot
Cancer Statistics, 2005
inferredcites →https://doi.org/10.55418/1881041883openalex-snapshot
Tumors of the Kidney, Bladder, and Related Urinary Structures

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Metabolic heterogeneity affects trastuzumab response and survival in HER2-positive advanced gastric cancer
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Stromal vapors for real-time molecular guidance of breast-conserving surgery
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Matrix-assisted laser desorption/ionization imaging mass spectrometry
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MALDI imaging-based classification of hepatocellular carcinoma and non-malignant lesions in fibrotic liver tissue
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In Situ Proteomic Analysis of Human Breast Cancer Epithelial Cells Using Laser Capture Microdissection: Annotation by Protein Set Enrichment Analysis and Gene Ontology
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l-DOPA-induced Dyskinesia is Associated with Regional Increase of Striatal Dynorphin Peptides as Elucidated by Imaging Mass Spectrometry
inferred← citeshttps://doi.org/10.1074/mcp.m113.027599openalex-snapshot
Comprehensive Identification of Proteins from MALDI Imaging
inferred← citeshttps://doi.org/10.1074/mcp.m113.031435openalex-snapshot
Quality Measures of Imaging Mass Spectrometry Aids in Revealing Long-term Striatal Protein Changes Induced by Neonatal Exposure to the Cyanobacterial Toxin β-N-methylamino-L-alanine (BMAA)
inferred← citeshttps://doi.org/10.1080/14789450.2016.1200470openalex-snapshot
Machine learning approaches in MALDI-MSI: clinical applications
inferred← citeshttps://doi.org/10.1080/14789450.2016.1248415openalex-snapshot
The proteomic landscape of renal tumors
inferred← citeshttps://doi.org/10.1080/14789450.2018.1521278openalex-snapshot
Mass spectrometry imaging: How will it affect clinical research in the future?
inferred← citeshttps://doi.org/10.1089/omi.2023.0169openalex-snapshot
From Microcosm to Macrocosm: The -Omics, Multiomics, and Sportomics Approaches in Exercise and Sports
inferred← citeshttps://doi.org/10.1093/ndt/gfab359openalex-snapshot
Mass spectrometry imaging and its place in nephrology
inferred← citeshttps://doi.org/10.1093/ndt/gft008openalex-snapshot
Imaging mass spectrometry: a new tool for kidney disease investigations
inferred← citeshttps://doi.org/10.1093/ndt/gfz136openalex-snapshot
Imaging the kidney: from light to super-resolution microscopy
inferred← citeshttps://doi.org/10.1097/dad.0b013e31823df1e2openalex-snapshot
Imaging Mass Spectrometry—A New and Promising Method to Differentiate Spitz Nevi From Spitzoid Malignant Melanomas
inferred← citeshttps://doi.org/10.1097/pat.0b013e32834a404fopenalex-snapshot
Anatomical pathology is dead? Long live anatomical pathology
inferred← citeshttps://doi.org/10.1101/2020.02.19.956433openalex-snapshot
Histo-molecular differentiation of renal cancer subtypes by mass spectrometry imaging and rapid proteome profiling of formalin-fixed paraffin-embedded tumor tissue sections
inferred← citeshttps://doi.org/10.1101/2020.03.05.978635openalex-snapshot
Phenotype Prediction using a Tensor Representation and Deep Learning from Data Independent Acquisition Mass Spectrometry
inferred← citeshttps://doi.org/10.1111/his.12337openalex-snapshot
MALDI imaging mass spectrometry in glomerulonephritis: feasibility study
inferred← citeshttps://doi.org/10.1111/j.1600-0625.2011.01289.xopenalex-snapshot
Spatial mapping by imaging mass spectrometry offers advancements for rapid definition of human skin proteomic signatures
inferred← citeshttps://doi.org/10.1111/jnc.12019openalex-snapshot
MALDI imaging of post‐mortem human spinal cord in amyotrophic lateral sclerosis
inferred← citeshttps://doi.org/10.1111/jog.15834openalex-snapshot
Data‐independent acquisition for proteomic applications in early ‐ stage endometrial cancer progression
inferred← citeshttps://doi.org/10.1134/s1068162011020063openalex-snapshot
Proteomics and peptidomics in fundamental and applied medical studies
inferred← citeshttps://doi.org/10.1155/2011/373584openalex-snapshot
The Role of Proteomics in the Diagnosis and Treatment of Women's Cancers: Current Trends in Technology and Future Opportunities
inferred← citeshttps://doi.org/10.1155/2014/625095openalex-snapshot
Current Opportunities and Challenges of Magnetic Resonance Spectroscopy, Positron Emission Tomography, and Mass Spectrometry Imaging for Mapping Cancer MetabolismIn Vivo
inferred← citeshttps://doi.org/10.1186/1746-4811-7-21openalex-snapshot
Matrix-assisted laser desorption/ionisation mass spectrometry imaging and its development for plant protein imaging
inferred← citeshttps://doi.org/10.1186/gm457openalex-snapshot
The emergence of top-down proteomics in clinical research
inferred← citeshttps://doi.org/10.1186/s12014-020-09291-wopenalex-snapshot
Proteomic approaches for characterizing renal cell carcinoma
inferred← citeshttps://doi.org/10.1186/s12014-022-09347-zopenalex-snapshot
Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: a case study of an urothelial cancer cohort analyzed in the Galaxy framework
inferred← citeshttps://doi.org/10.1186/s12885-022-10340-wopenalex-snapshot
Speckle-type POZ protein could play a potential inhibitory role in human renal cell carcinoma
inferred← citeshttps://doi.org/10.1186/s12916-021-02071-9openalex-snapshot
Absolute quantitative proteomics using the total protein approach to identify novel clinical immunohistochemical markers in renal neoplasms
inferred← citeshttps://doi.org/10.1194/jlr.m049189openalex-snapshot
Diabetic nephropathy induces alterations in the glomerular and tubule lipid profiles
inferred← citeshttps://doi.org/10.1371/journal.pone.0024913openalex-snapshot
Multiple Statistical Analysis Techniques Corroborate Intratumor Heterogeneity in Imaging Mass Spectrometry Datasets of Myxofibrosarcoma
inferred← citeshttps://doi.org/10.1517/17425255.2011.547473openalex-snapshot
A decade of advances in metabonomics
inferred← citeshttps://doi.org/10.1586/epr.10.83openalex-snapshot
Approaching MALDI molecular imaging for clinical proteomic research: current state and fields of application
inferred← citeshttps://doi.org/10.1586/epr.11.53openalex-snapshot
Recent advances in single-cell MALDI mass spectrometry imaging and potential clinical impact
inferred← citeshttps://doi.org/10.18632/oncotarget.27787openalex-snapshot
Histo-molecular differentiation of renal cancer subtypes by mass spectrometry imaging and rapid proteome profiling of formalin-fixed paraffin-embedded tumor tissue sections
inferred← citeshttps://doi.org/10.26481/dis.20201028pvopenalex-snapshot
Real-Time Molecular Patterns to support Intraoperative Decision-Making
inferred← citeshttps://doi.org/10.31390/gradschool_dissertations.4876openalex-snapshot
Infrared Laser Ablation for Biomolecule Sampling
inferred← citeshttps://doi.org/10.3390/brainsci13121637openalex-snapshot
Advances in Intraoperative Glioma Tissue Sampling and Infiltration Assessment
inferred← citeshttps://doi.org/10.3390/cancers14153628openalex-snapshot
Techniques for Profiling the Cellular Immune Response and Their Implications for Interventional Oncology
inferred← citeshttps://doi.org/10.3390/cancers17213524openalex-snapshot
Detection of Protein and Metabolites in Cancer Analyses by MALDI 2000–2025
inferred← citeshttps://doi.org/10.3390/cancers18010169openalex-snapshot
Assessment of Tumor Margin and Heterogeneity of Colorectal Cancer Using Imaging Mass Spectrometry and Image Segmentation
inferred← citeshttps://doi.org/10.3390/cells11030472openalex-snapshot
Multi-Omics Profiling to Assess Signaling Changes upon VHL Restoration and Identify Putative VHL Substrates in Clear Cell Renal Cell Carcinoma Cell Lines
inferred← citeshttps://doi.org/10.3390/ijms12010773openalex-snapshot
MALDI Imaging Mass Spectrometry (MALDI-IMS)―Application of Spatial Proteomics for Ovarian Cancer Classification and Diagnosis
inferred← citeshttps://doi.org/10.3390/life12030366openalex-snapshot
Application of Mass Spectrometry Imaging in Uro-Oncology: Discovering Potential Biomarkers
inferred← citeshttps://doi.org/10.3390/pr10020388openalex-snapshot
Imaging Method by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry (MALDI-MS) for Tissue or Tumor: A Mini Review
inferred← citeshttps://doi.org/10.3791/50733openalex-snapshot
Dithranol as a Matrix for Matrix Assisted Laser Desorption/Ionization Imaging on a Fourier Transform Ion Cyclotron Resonance Mass Spectrometer
inferred← citeshttps://doi.org/10.3892/ijo.2014.2788openalex-snapshot
MALDI TOF imaging mass spectrometry in clinical pathology: A valuable tool for cancer diagnostics (Review)
inferred← citeshttps://doi.org/10.4018/978-1-5225-5876-7.ch002openalex-snapshot
Digital Image Analysis in Clinical and Experimental Pathology
inferred← citeshttps://doi.org/10.4155/bio-2017-0281openalex-snapshot
Machine Learning Techniques for Mass Spectrometry Imaging Data Analysis and Applications
inferred← citeshttps://doi.org/10.4155/bio.11.282openalex-snapshot
Tissue Analysis By Imaging Ms
inferred← citeshttps://doi.org/10.4155/bio.13.341openalex-snapshot
Challenges and Recent Advances in Mass Spectrometric Imaging of Neurotransmitters
inferred← citeshttps://doi.org/10.4172/jpb.s3-002openalex-snapshot
Proteomic Tools for Cancer Research: Updating the Oncoproteomics
inferred← citeshttps://doi.org/10.5301/jn.5000243openalex-snapshot
Proteomics imaging and the kidney
inferred← citeshttps://doi.org/10.6084/m9.figshare.22612970openalex-snapshot
Additional file 1 of Speckle-type POZ protein could play a potential inhibitory role in human renal cell carcinoma
inferred← citeshttps://doi.org/10.70675/7740bff7ze311z44aaz88c5z8d5ab5cb5583openalex-snapshot
Identification et caractérisation de biomarqueurs associés à la progression tumorale du mélanome malin cutané : implication de TRAP1 et PDIA4
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