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Histo-molecular differentiation of renal cancer subtypes by mass spectrometry imaging and rapid proteome profiling of formalin-fixed paraffin-embedded tumor tissue sections
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1522-2683(19991201)20:18<3551::aid-elps3551>3.0.co;2-2openalex-snapshot
Probability-based protein identification by searching sequence databases using mass spectrometry data
inferredcites →https://doi.org/10.1002/anie.200902546openalex-snapshot
In Vivo, In Situ Tissue Analysis Using Rapid Evaporative Ionization Mass Spectrometry
inferredcites →https://doi.org/10.1002/pmic.201500461openalex-snapshot
MALDI mass spectrometry imaging of N‐glycans on tibial cartilage and subchondral bone proteins in knee osteoarthritis
inferredcites →https://doi.org/10.1002/pmic.201500508openalex-snapshot
Spatially‐resolved protein surface microsampling from tissue sections using liquid extraction surface analysis
inferredcites →https://doi.org/10.1002/prca.201200070openalex-snapshot
Microproteomics by liquid extraction surface analysis: Application to FFPE tissue to study the fimbria region of tubo‐ovarian cancer
inferredcites →https://doi.org/10.1002/prca.201700181openalex-snapshot
MALDI‐Imaging for Classification of Epithelial Ovarian Cancer Histotypes from a Tissue Microarray Using Machine Learning Methods
inferredcites →https://doi.org/10.1002/prca.201800008openalex-snapshot
A Comparative Proteomics Analysis of Five Body Fluids: Plasma, Urine, Cerebrospinal Fluid, Amniotic Fluid, and Saliva
inferredcites →https://doi.org/10.1002/prca.201800046openalex-snapshot
Development of a Class Prediction Model to Discriminate Pancreatic Ductal Adenocarcinoma from Pancreatic Neuroendocrine Tumor by MALDI Mass Spectrometry Imaging
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Proteomics in Pathology: The Special Issue
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Protein identification in imaging mass spectrometry through spatially targeted liquid micro‐extractions
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Model Assessment and Selection
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Droplet-Based Liquid Extraction for Spatially-Resolved Microproteomics Analysis of Tissue Sections
inferredcites →https://doi.org/10.1007/978-1-60761-987-1_12openalex-snapshot
imzML: Imaging Mass Spectrometry Markup Language: A Common Data Format for Mass Spectrometry Imaging
inferredcites →https://doi.org/10.1007/bf02890129openalex-snapshot
Human chromophobe cell renal carcinoma
inferredcites →https://doi.org/10.1007/s00216-010-4259-6openalex-snapshot
Multivariate statistical differentiation of renal cell carcinomas based on lipidomic analysis by ambient ionization imaging mass spectrometry
inferredcites →https://doi.org/10.1007/s00216-019-01983-zopenalex-snapshot
Precise co-registration of mass spectrometry imaging, histology, and laser microdissection-based omics
inferredcites →https://doi.org/10.1016/1044-0305(94)80016-2openalex-snapshot
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
inferredcites →https://doi.org/10.1016/j.bbabio.2010.08.006openalex-snapshot
Learning from oncocytic tumors: Why choose inefficient mitochondria?
inferredcites →https://doi.org/10.1016/j.bbapap.2016.11.003openalex-snapshot
A new classification method for MALDI imaging mass spectrometry data acquired on formalin-fixed paraffin-embedded tissue samples
inferredcites →https://doi.org/10.1016/j.cmet.2018.07.020openalex-snapshot
Isotope Tracing of Human Clear Cell Renal Cell Carcinomas Demonstrates Suppressed Glucose Oxidation In Vivo
inferredcites →https://doi.org/10.1016/j.ijms.2007.06.017openalex-snapshot
Solid phase extraction-liquid chromatography (SPE-LC) interface for automated peptide separation and identification by tandem mass spectrometry
inferredcites →https://doi.org/10.1016/j.ymeth.2018.04.004openalex-snapshot
Tumor classification with MALDI-MSI data of tissue microarrays: A case study
inferredcites →https://doi.org/10.1016/s0169-7439(01)00155-1openalex-snapshot
PLS-regression: a basic tool of chemometrics
inferredcites →https://doi.org/10.1016/s1044-0305(98)00126-3openalex-snapshot
Automated mass spectrometry imaging with a matrix-assisted laser desorption ionization time-of-flight instrument
inferredcites →https://doi.org/10.1021/ac970888iopenalex-snapshot
Molecular Imaging of Biological Samples: Localization of Peptides and Proteins Using MALDI-TOF MS
inferredcites →https://doi.org/10.1021/acs.analchem.8b02682openalex-snapshot
Lipid Changes Associated with Traumatic Brain Injury Revealed by 3D MALDI-MSI
inferredcites →https://doi.org/10.1021/acs.analchem.9b05095openalex-snapshot
DirectMS1: MS/MS-Free Identification of 1000 Proteins of Cellular Proteomes in 5 Minutes
inferredcites →https://doi.org/10.1021/acs.jproteome.9b00082openalex-snapshot
Evosep One Enables Robust Deep Proteome Coverage Using Tandem Mass Tags while Significantly Reducing Instrument Time
inferredcites →https://doi.org/10.1021/pr200784popenalex-snapshot
Tumor Classification of Six Common Cancer Types Based on Proteomic Profiling by MALDI Imaging
inferredcites →https://doi.org/10.1021/pr5008575openalex-snapshot
Integrated Solid-Phase Extraction–Capillary Liquid Chromatography (speLC) Interfaced to ESI–MS/MS for Fast Characterization and Quantification of Protein and Proteomes
inferredcites →https://doi.org/10.1021/pr501067zopenalex-snapshot
The Use of Mass Spectrometry Imaging to Predict Treatment Response of Patient-Derived Xenograft Models of Triple-Negative Breast Cancer
inferredcites →https://doi.org/10.1021/pr700865copenalex-snapshot
Isocratic Solid Phase Extraction-Liquid Chromatography (SPE-LC) Interfaced to High-Performance Tandem Mass Spectrometry for Rapid Protein Identification
inferredcites →https://doi.org/10.1021/pr900936zopenalex-snapshot
Molecular Analysis of Tumor Margins by MALDI Mass Spectrometry in Renal Carcinoma
inferredcites →https://doi.org/10.1038/nbt.1511openalex-snapshot
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
inferredcites →https://doi.org/10.1038/ncomms11906openalex-snapshot
Targeted proteomics identifies liquid-biopsy signatures for extracapsular prostate cancer
inferredcites →https://doi.org/10.1038/nmeth.3901openalex-snapshot
The Perseus computational platform for comprehensive analysis of (prote)omics data
inferredcites →https://doi.org/10.1038/s41416-018-0048-3openalex-snapshot
The surgical intelligent knife distinguishes normal, borderline and malignant gynaecological tissues using rapid evaporative ionisation mass spectrometry (REIMS)
inferredcites →https://doi.org/10.1038/s41467-019-08831-9openalex-snapshot
An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics
inferredcites →https://doi.org/10.1038/s41592-018-0010-6openalex-snapshot
Automated, parallel mass spectrometry imaging and structural identification of lipids
inferredcites →https://doi.org/10.1038/s41592-019-0426-7openalex-snapshot
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
inferredcites →https://doi.org/10.1074/mcp.m115.057513openalex-snapshot
Reliable Entity Subtyping in Non-small Cell Lung Cancer by Matrix-assisted Laser Desorption/Ionization Imaging Mass Spectrometry on Formalin-fixed Paraffin-embedded Tissue Specimens
inferredcites →https://doi.org/10.1074/mcp.m116.062414openalex-snapshot
Unlocking Cancer Glycomes from Histopathological Formalin-fixed and Paraffin-embedded (FFPE) Tissue Microdissections
inferredcites →https://doi.org/10.1074/mcp.o115.053918openalex-snapshot
Probabilistic Segmentation of Mass Spectrometry (MS) Images Helps Select Important Ions and Characterize Confidence in the Resulting Segments
inferredcites →https://doi.org/10.1074/mcp.ra119.001604openalex-snapshot
Mapping Spatiotemporal Microproteomics Landscape in Experimental Model of Traumatic Brain Injury Unveils a link to Parkinson's Disease*
inferredcites →https://doi.org/10.1074/mcp.tir118.000953openalex-snapshot
FlashPack: Fast and Simple Preparation of Ultrahigh-performance Capillary Columns for LC-MS*
inferredcites →https://doi.org/10.1093/bioinformatics/btv146openalex-snapshot
Cardinal : an R package for statistical analysis of mass spectrometry-based imaging experiments
inferredcites →https://doi.org/10.1093/bioinformatics/btx724openalex-snapshot
Deep learning for tumor classification in imaging mass spectrometry
inferredcites →https://doi.org/10.1093/nar/gkv468openalex-snapshot
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap
inferredcites →https://doi.org/10.1093/nar/gky1131openalex-snapshot
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
inferredcites →https://doi.org/10.1097/00000478-200101000-00004openalex-snapshot
Immunohistochemical Panels For Differentiating Epithelial Malignant Mesothelioma From Lung Adenocarcinoma
inferredcites →https://doi.org/10.1101/gr.772403openalex-snapshot
PANTHER: A Library of Protein Families and Subfamilies Indexed by Function
inferredcites →https://doi.org/10.1126/science.aaa8415openalex-snapshot
Machine learning: Trends, perspectives, and prospects
inferredcites →https://doi.org/10.1128/cmr.00072-12openalex-snapshot
Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry: a Fundamental Shift in the Routine Practice of Clinical Microbiology
inferredcites →https://doi.org/10.1136/jclinpath-2013-201895openalex-snapshot
Differentiation of oncocytoma from chromophobe renal cell carcinoma (RCC): can novel molecular biomarkers help solve an old problem?
inferredcites →https://doi.org/10.1136/jclinpath-2016-204017openalex-snapshot
Detection of HPV subtypes by mass spectrometry in FFPE tissue specimens: a reliable tool for routine diagnostics
inferredcites →https://doi.org/10.1146/annurev-anchem-071114-040325openalex-snapshot
Evolution of Orbitrap Mass Spectrometry Instrumentation
inferredcites →https://doi.org/10.1186/gb-2006-7-11-242openalex-snapshot
High-accuracy proteome maps of human body fluids.
inferredcites →https://doi.org/10.1186/s12014-018-9200-6openalex-snapshot
Proteomic distinction of renal oncocytomas and chromophobe renal cell carcinomas
inferredcites →https://doi.org/10.1590/0100-3984.2013.1927openalex-snapshot
Renal cell carcinoma: histological classification and correlation with imaging findings
inferredcites →https://doi.org/10.2533/chimia.2014.146openalex-snapshot
iMatrixSpray: A Free and Open Source Sample Preparation Device for Mass Spectrometric Imaging
inferredcites →https://doi.org/10.3322/caac.21492openalex-snapshot
Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries
inferredcites →https://doi.org/10.3389/fonc.2018.00070openalex-snapshot
Alterations of the Human Skin N- and O-Glycome in Basal Cell Carcinoma and Squamous Cell Carcinoma
inferredcites →https://doi.org/10.4155/fsoa-2017-0053openalex-snapshot
Mass Spectrometry in Medicine: A Technology for the Future?
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41540-024-00385-xopenalex-snapshot
Enhancing mass spectrometry imaging accessibility using convolutional autoencoders for deriving hypoxia-associated peptides from tumors
inferred← citeshttps://doi.org/10.1097/cco.0000000000000829openalex-snapshot
Renal oncocytoma: a challenging diagnosis
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