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Major challenges confronting marine biogeochemical modeling

https://doi.org/10.1029/1999gb900039

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Seasonal cycles of pelagic production and consumption

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Deep-ocean metabolic CO2 production: calculations from ETS activity

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Measurement of sea surface partial pressure of C02 from a moored buoy

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Variations in the seasonal cycle of biological production in subarctic oceans: A model sensitivity analysis

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The lateral flux of biogenic particles from the eastern North American continental margin to the North Atlantic Ocean

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Molecular indicators of diagenetic status in marine organic matter

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Particle flux in deep seas: regional characteristics and temporal variability

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Eddy-induced nutrient supply and new production in the Sargasso Sea

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Interpolation of TC02 data on a 1° × 1° grid throughout the water column below 500 m depth in the Atlantic Ocean

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Initial results from the Bermuda Testbed Mooring program

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Transmissometer measurement of POC

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An improved method for detecting anthropogenic CO2 in the oceans

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The decoupling of production and particulate export in the surface ocean

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Meridional transport of dissolved inorganic carbon in the South Atlantic Ocean

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Net community production of dissolved organic carbon

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A global three‐dimensional atmosphere‐ocean model of methyl bromide distributions

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Low interannual variability in recent oceanic uptake of atmospheric carbon dioxide

inferredcites →https://doi.org/10.1038/28367openalex-snapshot

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inferredcites →https://doi.org/10.1038/28373openalex-snapshot

Eddy-induced enhancement of primary production in a model of the North Atlantic Ocean

inferredcites →https://doi.org/10.1038/331341a0openalex-snapshot

Iron deficiency limits phytoplankton growth in the north-east Pacific subarctic

inferredcites →https://doi.org/10.1038/34630openalex-snapshot

Silicate regulation of new production in the equatorial Pacific upwelling

inferredcites →https://doi.org/10.1038/350053a0openalex-snapshot

Importance of continental margins in the marine biogeochemical cycling of carbon and nitrogen

inferredcites →https://doi.org/10.1038/35290openalex-snapshot

Phytoplankton change in the North Atlantic

inferredcites →https://doi.org/10.1038/363248a0openalex-snapshot

Elevated consumption of carbon relative to nitrogen in the surface ocean

inferredcites →https://doi.org/10.1038/371405a0openalex-snapshot

Annual flux of dissolved organic carbon from the euphotic zone in the northwestern Sargasso Sea

inferredcites →https://doi.org/10.1038/371689a0openalex-snapshot

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inferredcites →https://doi.org/10.1038/373230a0openalex-snapshot

Ecosystem changes in the North Pacific subtropical gyre attributed to the 1991–92 El Niño

inferredcites →https://doi.org/10.1038/383495a0openalex-snapshot

A massive phytoplankton bloom induced by an ecosystem-scale iron fertilization experiment in the equatorial Pacific Ocean

inferredcites →https://doi.org/10.1038/41474openalex-snapshot

The role of nitrogen fixation in biogeochemical cycling in the subtropical North Pacific Ocean

inferredcites →https://doi.org/10.1073/pnas.94.16.8292openalex-snapshot

Global air-sea flux of CO 2 : An estimate based on measurements of sea–air pCO 2 difference

inferredcites →https://doi.org/10.1080/00785236.1995.10422044openalex-snapshot

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inferredcites →https://doi.org/10.1080/07055900.1997.9687363openalex-snapshot

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inferredcites →https://doi.org/10.1093/plankt/18.7.1103openalex-snapshot

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inferredcites →https://doi.org/10.1098/rstb.1995.0055openalex-snapshot

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inferredcites →https://doi.org/10.1111/j.1365-2419.1994.tb00105.xopenalex-snapshot

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inferredcites →https://doi.org/10.1126/science.238.4823.70openalex-snapshot

Climate and Chlorophyll a: Long-Term Trends in the Central North Pacific Ocean

inferredcites →https://doi.org/10.1126/science.276.5316.1221openalex-snapshot

Trichodesmium , a Globally Significant Marine Cyanobacterium

inferredcites →https://doi.org/10.1126/science.277.5327.796openalex-snapshot

Variability in Radiocarbon Ages of Individual Organic Compounds from Marine Sediments

inferredcites →https://doi.org/10.1126/science.280.5364.694openalex-snapshot

Microbial Control of Oceanic Carbon Flux: The Plot Thickens

inferredcites →https://doi.org/10.1126/science.281.5374.210openalex-snapshot

Climate-Ocean Variability and Ecosystem Response in the Northeast Pacific

inferredcites →https://doi.org/10.1145/293686.293695openalex-snapshot

Recipes for adjoint code construction

inferredcites →https://doi.org/10.1146/annurev.fl.28.010196.001243openalex-snapshot

Modeling the Oceanic General Circulation

inferredcites →https://doi.org/10.1175/1520-0485(1990)020<0150:imiocm>2.0.co;2openalex-snapshot

Isopycnal Mixing in Ocean Circulation Models

inferredcites →https://doi.org/10.1175/1520-0485(1991)021<0205:anpemf>2.0.co;2openalex-snapshot

A Nested Primitive Equation Model for Oceanic Applications

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A nitrogen-based model of plankton dynamics in the oceanic mixed layer

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Parameter optimization and analysis of ecosystem models using simulated annealing: A case study at Station P

inferredcites →https://doi.org/10.1890/1051-0761(1998)8[s6:ldatso]2.0.co;2openalex-snapshot

LARGE-SCALE DISTURBANCE AND THE STRUCTURE OF MARINE SYSTEMS: FISHERY IMPACTS ON GEORGES BANK

inferredcites →https://doi.org/10.4319/lo.1991.36.8.1715openalex-snapshot

Atmospheric transport of iron and its deposition in the ocean

inferredcites →https://doi.org/10.4319/lo.1994.39.3.0597openalex-snapshot

Grazing limitation and nutrient limitation in marine ecosystems: Steady state solutions of an ecosystem model with multiple food chains

inferredcites →https://doi.org/10.4319/lo.1997.42.1.0001openalex-snapshot

Photosynthetic rates derived from satellite‐based chlorophyll concentration

inferredcites →https://doi.org/10.4319/lo.1997.42.3.0405openalex-snapshot

Iron and grazing constraints on primary production in the central equatorial Pacific: An EqPac synthesis

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Coastal eutrophication and harmful algal blooms: Importance of atmospheric deposition and groundwater as “new” nitrogen and other nutrient sources

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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The Impact of Climate Change and Feedback Processes on the Ocean Carbon Cycle

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Upper ocean ecosystem dynamics and iron cycling in a global three‐dimensional model

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Spatial and temporal distribution of Trichodesmium blooms in the world's oceans

inferred← citeshttps://doi.org/10.1029/2006gb002857openalex-snapshot

Impact of circulation on export production, dissolved organic matter, and dissolved oxygen in the ocean: Results from Phase II of the Ocean Carbon‐cycle Model Intercomparison Project (OCMIP‐2)

inferred← citeshttps://doi.org/10.1029/2011jg001895openalex-snapshot

Can spatial heterogeneity explain the perceived imbalance in Lake Superior's carbon budget? A model study

inferred← citeshttps://doi.org/10.1029/2020gb006880openalex-snapshot

Impact of Lagrangian Sea Surface Temperature Variability on Southern Ocean Phytoplankton Community Growth Rates

inferred← citeshttps://doi.org/10.1029/2020jc016211openalex-snapshot

Hidden Production: On the Importance of Pelagic Phytoplankton Blooms Beneath Arctic Sea Ice

inferred← citeshttps://doi.org/10.1029/2020jc016649openalex-snapshot

Towards a Multi‐Platform Assimilative System for North Sea Biogeochemistry

inferred← citeshttps://doi.org/10.1029/2024jh000268openalex-snapshot

Long Term Predictability of Southern Ocean Surface Nutrients Using Explainable Neural Networks

inferred← citeshttps://doi.org/10.1029/2025jg009428openalex-snapshot

Modeling Upper Ocean Ecosystem Dynamics in Response to Interannual Sea‐Ice Variability in the Western Antarctic Peninsula

inferred← citeshttps://doi.org/10.1029/2026gl123123openalex-snapshot

Neural‐BGC: An Observation‐Driven Emulator for Hybrid Physical‐Biogeochemical Modeling

inferred← citeshttps://doi.org/10.1038/35054659openalex-snapshot

The Rossby rototiller

inferred← citeshttps://doi.org/10.1038/ismej.2011.127openalex-snapshot

Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation

inferred← citeshttps://doi.org/10.1038/npg.els.0003242openalex-snapshot

Global Change – The Future and the Greenhouse Effect

inferred← citeshttps://doi.org/10.1038/s43247-023-00871-wopenalex-snapshot

Zooplankton grazing is the largest source of uncertainty for marine carbon cycling in CMIP6 models

inferred← citeshttps://doi.org/10.1039/9781839169717-00042openalex-snapshot

Biogenic Silica in Ocean and Terrestrial Environments

inferred← citeshttps://doi.org/10.1073/pnas.0702218104openalex-snapshot

Impact of anthropogenic atmospheric nitrogen and sulfur deposition on ocean acidification and the inorganic carbon system

inferred← citeshttps://doi.org/10.1093/plankt/24.6.533openalex-snapshot

Intrinsic dynamics and stability properties of size-structured pelagic ecosystem models

inferred← citeshttps://doi.org/10.1093/plankt/fbi076openalex-snapshot

Plankton functional type modelling: running before we can walk?

inferred← citeshttps://doi.org/10.1093/plankt/fbq054openalex-snapshot

A size-spectrum zooplankton closure model for ecosystem modelling

inferred← citeshttps://doi.org/10.1093/plankt/fbq105openalex-snapshot

Oxyrrhis marina-based models as a tool to interpret protozoan population dynamics

inferred← citeshttps://doi.org/10.1098/rsta.2008.0139openalex-snapshot

Ocean fertilization: a potential means of geoengineering?

inferred← citeshttps://doi.org/10.1103/physreve.68.021904openalex-snapshot

Statistical mechanical approaches to models with many poorly known parameters

inferred← citeshttps://doi.org/10.1109/iceccs.2010.44openalex-snapshot

Performance Antipatterns as Logical Predicates

inferred← citeshttps://doi.org/10.1109/iceccs.2010.49openalex-snapshot

Representing Plankton Functional Types in Ocean General Circulation Models: Competition, Tradeoffs and Self-Organizing Architecture

inferred← citeshttps://doi.org/10.1111/gcb.17008openalex-snapshot

The importance of oxygen for explaining rapid shifts in a marine fish

inferred← citeshttps://doi.org/10.1111/j.1365-2486.2005.1004.xopenalex-snapshot

Ecosystem dynamics based on plankton functional types for global ocean biogeochemistry models

inferred← citeshttps://doi.org/10.1126/science.1069174openalex-snapshot

The North Atlantic Spring Phytoplankton Bloom and Sverdrup's Critical Depth Hypothesis

inferred← citeshttps://doi.org/10.1139/f04-025openalex-snapshot

Ecosystem modelling of the cycling of marine dimethylsulfide: a review of current approaches and of the potential for extrapolation to global scales

inferred← citeshttps://doi.org/10.1146/annurev-marine-121422-015330openalex-snapshot

Active Carbon Transport by Diel Vertical Migrating Zooplankton: Calculated and Modeled, but Never Measured

inferred← citeshttps://doi.org/10.1146/annurev.marine.010908.163801openalex-snapshot

Contributions of Long-Term Research and Time-Series Observations to Marine Ecology and Biogeochemistry

inferred← citeshttps://doi.org/10.1175/1087-3562(2004)008<0001:eaedss>2.0.co;2openalex-snapshot

Ecodynamic and Eddy-Admitting Dimethyl Sulfide Simulations in a Global Ocean Biogeochemistry/Circulation Model

inferred← citeshttps://doi.org/10.1175/1520-0477(2001)082<2357:tccsm>2.3.co;2openalex-snapshot

The Community Climate System Model

inferred← citeshttps://doi.org/10.1357/002224007780882541openalex-snapshot

Simulations of phytoplankton species and carbon production in the equatorial Pacific Ocean 2. Effects of physical and biogeochemical processes

inferred← citeshttps://doi.org/10.1357/002224007781567621openalex-snapshot

An assessment of the use of sediment traps for estimating upper ocean particle fluxes

inferred← citeshttps://doi.org/10.1560/qvpd-ywj1-ja22-xmdeopenalex-snapshot

Two‐way interactions between ocean biota and climate mediated by biogeochemical cycles

inferred← citeshttps://doi.org/10.1575/1912/6073openalex-snapshot

Physical influences on phytoplankton ecology : models and observations

inferred← citeshttps://doi.org/10.1890/0012-9658(2002)083[2069:efbaeo]2.0.co;2openalex-snapshot

ECOLOGICAL FUTURES: BUILDING AN ECOLOGY OF THE LONG NOW1

inferred← citeshttps://doi.org/10.1890/1051-0761(2001)011[1027:wiacw]2.0.co;2openalex-snapshot

WATER IN A CHANGING WORLD

inferred← citeshttps://doi.org/10.1890/1540-9295(2004)002[0457:fgteto]2.0.co;2openalex-snapshot

From Genes to Ecosystems: The Ocean's New Frontier

inferred← citeshttps://doi.org/10.2112/si65-021a.1openalex-snapshot

Numerical modelling of the phytoplankton patterns in an upwelling event off the NW Iberian Margin

inferred← citeshttps://doi.org/10.2139/ssrn.7451146openalex-snapshot

Assessing direct and indirect assimilation of remote sensing reflectance in a 1D-biogeochemical model of the Northwestern Mediterranean Sea

inferred← citeshttps://doi.org/10.25904/1912/1064openalex-snapshot

A Biogeochemical Modelling Analysis of the Potential For Marine Ecosystems to Regulate Climate By the Production of Dimethylsulphide

inferred← citeshttps://doi.org/10.3354/meps14236openalex-snapshot

Variability of plankton production during the spring bloom in NW Iberia

inferred← citeshttps://doi.org/10.3354/meps219065openalex-snapshot

Phytoplankton size-structure, particulate and dissolved organic carbon production and oxygen fluxes through microbial communities in the NW Iberian coastal transition zone

inferred← citeshttps://doi.org/10.3354/meps271013openalex-snapshot

Evaluation of the current state of mechanistic aquatic biogeochemical modeling

inferred← citeshttps://doi.org/10.3389/fmars.2020.00497openalex-snapshot

Assessment of the Skill of Coupled Physical–Biogeochemical Models in the NW Mediterranean

inferred← citeshttps://doi.org/10.3389/fmars.2020.00549openalex-snapshot

Perturbed Biology and Physics Signatures in a 1-D Ocean Biogeochemical Model Ensemble

inferred← citeshttps://doi.org/10.3389/fmars.2021.612764openalex-snapshot

Assessing the Skill of a High-Resolution Marine Biophysical Model Using Geostatistical Analysis of Mesoscale Ocean Chlorophyll Variability From Field Observations and Remote Sensing

inferred← citeshttps://doi.org/10.3390/w10050572openalex-snapshot

Numerical Modeling of Long-Term Biogeochemical Processes and Its Application to Sedimentary Bed Formation in Tokyo Bay

inferred← citeshttps://doi.org/10.4319/lo.2000.45.8.1731openalex-snapshot

Functional separation of colloids and gravitoids in surface waters based on differential settling velocity: Coupled cross‐flow filtration—split flow thin‐cell fractionation (CFF‐SPLITT)

inferred← citeshttps://doi.org/10.4319/lo.2005.50.2.0658openalex-snapshot

Linking ecosystem dynamics and biogeochemistry: Sinking fractionation of organic carbon in a Swedish fjord

inferred← citeshttps://doi.org/10.4319/lom.2005.3.462openalex-snapshot

New applications of a biogenic silica deposition fluorophore in the study of oceanic diatoms

inferred← citeshttps://doi.org/10.5194/bg-1-101-2004openalex-snapshot

Coastal upwelling fluxes of O 2 , N 2 O, and CO 2 assessed from continuous atmospheric observations at Trinidad, California

inferred← citeshttps://doi.org/10.5194/bg-10-7373-2013openalex-snapshot

Long-term trends in ocean plankton production and particle export between 1960–2006

inferred← citeshttps://doi.org/10.5194/bg-14-2877-2017openalex-snapshot

Biogeochemical versus ecological consequences of modeled ocean physics

inferred← citeshttps://doi.org/10.5194/bg-15-6685-2018openalex-snapshot

A perturbed biogeochemistry model ensemble evaluated against in situ and satellite observations

inferred← citeshttps://doi.org/10.5194/bg-19-5079-2022openalex-snapshot

Influence of GEOTRACES data distribution and misfit function choice on objective parameter retrieval in a marine zinc cycle model

inferred← citeshttps://doi.org/10.5194/bg-2022-105-ac1openalex-snapshot

Reply on RC1

inferred← citeshttps://doi.org/10.5194/bg-2022-105-rc1openalex-snapshot

Comment on bg-2022-105

inferred← citeshttps://doi.org/10.5194/bg-2022-105-rc2openalex-snapshot

Comment on bg-2022-105

inferred← citeshttps://doi.org/10.5194/bg-21-4149-2024openalex-snapshot

Assessing the tropical Atlantic biogeochemical processes in the Norwegian Earth System Model

inferred← citeshttps://doi.org/10.5194/bg-5-385-2008openalex-snapshot

The impact on atmospheric CO 2 of iron fertilization induced changes in the ocean's biological pump

inferred← citeshttps://doi.org/10.5194/bg-6-375-2009openalex-snapshot

The role of ocean transport in the uptake of anthropogenic CO 2

inferred← citeshttps://doi.org/10.5194/egusphere-2023-2947-ac1openalex-snapshot

Reply on RC1

inferred← citeshttps://doi.org/10.5194/egusphere-2023-2947-ac2openalex-snapshot

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Comment on egusphere-2023-2947

inferred← citeshttps://doi.org/10.5194/egusphere-2023-2947-rc2openalex-snapshot

Comment on egusphere-2023-2947

inferred← citeshttps://doi.org/10.5194/egusphere-2024-453-ac1openalex-snapshot

Reply on RC1

inferred← citeshttps://doi.org/10.5194/egusphere-2024-453-ac2openalex-snapshot

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inferred← citeshttps://doi.org/10.5194/egusphere-2024-453-ac3openalex-snapshot

Reply on RC2

inferred← citeshttps://doi.org/10.5194/egusphere-2024-453-cc1openalex-snapshot

Comment on egusphere-2024-453 (Bjorn Stevens)

inferred← citeshttps://doi.org/10.5194/egusphere-2024-453-cc2openalex-snapshot

Comment on egusphere-2024-453

inferred← citeshttps://doi.org/10.5194/egusphere-2024-453-cc3openalex-snapshot

Comment on egusphere-2024-453 (Dreyfus, Miller & Hull)

inferred← citeshttps://doi.org/10.5194/egusphere-2024-453-cc4openalex-snapshot

Comment on egusphere-2024-453 -- Oliver Morton

inferred← citeshttps://doi.org/10.5194/egusphere-2024-453-rc1openalex-snapshot

Comment on egusphere-2024-453

inferred← citeshttps://doi.org/10.5194/egusphere-2024-453-rc2openalex-snapshot

Comment on egusphere-2024-453

inferred← citeshttps://doi.org/10.5194/esd-15-1319-2024openalex-snapshot

Bringing it all together: science priorities for improved understanding of Earth system change and to support international climate policy

inferred← citeshttps://doi.org/10.5194/gmd-13-3529-2020openalex-snapshot

Simulating stable carbon isotopes in the ocean component of the FAMOUS general circulation model with MOSES1 (XOAVI)

inferred← citeshttps://doi.org/10.5194/gmd-14-2419-2021openalex-snapshot

BFM17 v1.0: a reduced biogeochemical flux model for upper-ocean biophysical simulations

inferred← citeshttps://doi.org/10.5194/gmd-8-2465-2015openalex-snapshot

PISCES-v2: an ocean biogeochemical model for carbon and ecosystem studies

inferred← citeshttps://doi.org/10.5194/os-11-251-2015openalex-snapshot

A geographical and seasonal comparison of nitrogen uptake by phytoplankton in the Southern Ocean

inferred← citeshttps://doi.org/10.5194/os-17-1141-2021openalex-snapshot

Can assimilation of satellite observations improve subsurface biological properties in a numerical model? A case study for the Gulf of Mexico

inferred← citeshttps://doi.org/10.5194/os-2-249-2006openalex-snapshot

Mechanisms controlling primary and new production in a global ecosystem model – Part I: Validation of the biological simulation

inferred← citeshttps://doi.org/10.5194/os-2021-35-ac1openalex-snapshot

Reply on RC1

inferred← citeshttps://doi.org/10.5194/os-2021-35-ac2openalex-snapshot

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inferred← citeshttps://doi.org/10.5194/os-2021-35-ac3openalex-snapshot

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inferred← citeshttps://doi.org/10.5194/os-2021-35-ac4openalex-snapshot

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inferred← citeshttps://doi.org/10.5194/os-2021-35-rc1openalex-snapshot

Comment on os-2021-35

inferred← citeshttps://doi.org/10.5194/os-2021-35-rc2openalex-snapshot

Comment on os-2021-35

inferred← citeshttps://doi.org/10.5194/os-2021-35-rc3openalex-snapshot

Comment on os-2021-35

inferred← citeshttps://doi.org/10.5194/os-2021-35-rc4openalex-snapshot

Comment on os-2021-35

inferred← citeshttps://doi.org/10.5194/os-9-37-2013openalex-snapshot

Toward a multivariate reanalysis of the North Atlantic Ocean biogeochemistry during 1998–2006 based on the assimilation of SeaWiFS chlorophyll data

inferred← citeshttps://doi.org/10.5670/oceanog.2001.10openalex-snapshot

Marine Biogeochemical Modeling: Recent Advances and Future Challenges

inferred← citeshttps://doi.org/10.5670/oceanog.2006.89openalex-snapshot

Modeling Ocean Ecosystems: The PARADIGM Program

inferred← citeshttps://doi.org/10.5670/oceanog.2008.70openalex-snapshot

Eastern US Continental Shelf Carbon Budget: Integrating Models, Data Assimilation, and Analysis

inferred← citeshttps://doi.org/10.5670/oceanog.2010.09openalex-snapshot

Study of Marine Ecosystems and Biogeochemistry Now and in the Future: Examples of the Unique Contributions from Space

inferred← citeshttps://doi.org/10.5670/oceanog.2010.27openalex-snapshot

Oceanic Ecosystem Time-Series Programs: Ten Lessons Learned

inferred← citeshttps://doi.org/10.5821/dissertation-2117-131431openalex-snapshot

Ecosystem modelling in the Eastern Mediterranean Sea : the cumulative impact of alien species, fishing and climate change on the Israeli marine ecosystem

inferred← citeshttps://doi.org/10.5821/dissertation-2117-93693openalex-snapshot

Dynamics of oligotrophic pelagic environments:North western Mediterranean sea and subtropical north Atlantic

inferred← citeshttps://doi.org/10.6084/m9.figshare.1056285openalex-snapshot

An Ecosystem Model with Evolutionary Adaptive Trophic Structure

inferred← citeshttps://doi.org/10.70675/0d428302z0e6fz4ec2z951fz02d0de580f36openalex-snapshot

Rôle du forçage physique sur l'écosystème à l'est du Golfe du Lion : modulation de l'impact des apports anthropiques en sels nutritifs et matière organique étudiée par modélisation 3D couplée physique et biogéochimique.

inferred← citeshttps://doi.org/10.70675/2f2ea19dz5902z4630za446z33378cb7bd1bopenalex-snapshot

Diversité taxinomique et fonctionnelle des habitats benthiques dans l'espace et dans le temps : une perspective régionale et décennale

inferred← citeshttps://doi.org/10.70675/303124b6zcbadz461fzb4d3za3ff75b99d90openalex-snapshot

Etude des interactions entre diazotrophie, disponibilité nutritive et production planctonique dans l'océan de surface du pacifique tropical sud-ouest par une approche combinant observation et modélisation

inferred← citeshttps://doi.org/10.70675/4f42dddbzd254z46a7zabb1zd3b435a637bbopenalex-snapshot

Modélisation de l'impact du Fer particulaire d'origine sédimentaire sur les cycles biogéochimiques marins

inferred← citeshttps://doi.org/10.70675/eb077e93z8cedz4735z8c4fz3afbd5162570openalex-snapshot

Cycles biogéochimiques (Si, C, N, P) en lien avec la dynamique nutritionnelle du phytoplancton dans la région naturellement fertilisée des Kerguelen

inferred← citeshttps://doi.org/10.7773/cm.v35i2.1438openalex-snapshot

Chemical tracer transport in the eastern boundary current system of the North Atlantic

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