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Coastal Generalized Ecosystem Model (Cgem) 1.0: A Complex Biogeochemical Model for Simulating Lower Trophic Levels and Ecosystem Dynamics

https://doi.org/10.2139/ssrn.4776851
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Nutrients, light and primary production by phytoplankton and microphytobenthos in the eutrophic, turbid Westerschelde estuary (The Netherlands)
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Element ratios and aquatic food webs
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Sediment-water fluxes of dissolved inorganic carbon, O2, nutrients, and N2 from the hypoxic region of the Louisiana continental shelf
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Sediment and Lower Water Column Oxygen Consumption in the Seasonally Hypoxic Region of the Louisiana Continental Shelf
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Seasonal and Inter-annual Patterns in Primary Production, Respiration, and Net Ecosystem Metabolism in Three Estuaries in the Northeast Gulf of Mexico
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A method-of-lines code for carbon and nutrient diagenesis in aquatic sediments
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A simulation model for phytoplankton growth and nutrient cycling in eutrophic, shallow lakes
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Confirmation of water quality models
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Interactions between freshwater input, light, and phytoplankton dynamics on the Louisiana continental shelf
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Rapid organic matter cycling in North Sea sediments
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Origins and scales of hypoxia on the Louisiana shelf: Importance of seasonal plankton dynamics and river nutrients and discharge
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Integration of a benthic sediment diagenesis module into the two dimensional hydrodynamic and water quality model – CE-QUAL-W2
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Parameter sensitivity and identifiability for a biogeochemical model of hypoxia in the northern Gulf of Mexico
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The Chesapeake Bay program modeling system: Overview and recommendations for future development
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Understanding plankton ecosystem dynamics under realistic micro-scale variability requires modeling at least three trophic levels
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Oxygen consumption in the water column and sediments of the northern Gulf of Mexico hypoxic zone
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Uncertainty in the environmental modelling process – A framework and guidance
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Model integration and the role of data
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The impact of alternative nutrient kinetics and computational grid size on model predicted primary production and hypoxic area in the northern Gulf of Mexico
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Inter-model comparison of simulated Gulf of Mexico hypoxia in response to reduced nutrient loads: Effects of phytoplankton and organic matter parameterization
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Harmful algal blooms and climate change: Learning from the past and present to forecast the future
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Modeling harmful algal blooms in a changing climate
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Intercomparison of three spatially-resolved, process-based Lake Erie hypoxia models
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A non-steady state diagenetic model for changes in sediment biogeochemistry in response to seasonally hypoxic/anoxic conditions in the “dead zone” of the Louisiana shelf
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Origins and temporal scales of hypoxia on the Louisiana shelf: Importance of benthic and sub-pycnocline water metabolism
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Regulation of eutrophication susceptibility in oligohaline regions of a northern Gulf of Mexico estuary, Mobile Bay, Alabama
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Over-parameterised, uncertain ‘mathematical marionettes’ — How can we best use catchment water quality models? An example of an 80-year catchment-scale nutrient balance
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Measuring and modeling diel oxygen dynamics in a shallow hypereutrophic estuary: Implications of low oxygen exposure on aquatic life
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Modelling multi-nutrient interactions in phytoplankton; balancing simplicity and realism
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Copepod food-quality threshold as a mechanism influencing phytoplankton succession and accumulation of biomass, and secondary productivity: a modeling study with management implications
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Modeling the impacts of decadal changes in riverine nutrient fluxes on coastal eutrophication near the Mississippi River Delta
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Contiguous Low Oxygen Waters between the Continental Shelf Hypoxia Zone and Nearshore Coastal Waters of Louisiana, USA: Interpreting 30 Years of Profiling Data and Three-Dimensional Ecosystem Modeling
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Modeling the Relative Importance of Nutrient and Carbon Loads, Boundary Fluxes, and Sediment Fluxes on Gulf of Mexico Hypoxia
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Optical oceanography: Recent advances and future directions using global remote sensing and in situ observations
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Penetration of solar radiation in the upper ocean: A numerical model for oceanic and coastal waters
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Assessment of skill and portability in regional marine biogeochemical models: Role of multiple planktonic groups
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Benthic primary productivity on the Georgia midcontinental shelf: Benthic flux measurements and high‐resolution, continuous in situ PAR records
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Analysis of Hypoxia and Sensitivity to Nutrient Pollution in Salish Sea
inferredcites →https://doi.org/10.1029/2018jc013950openalex-extracted
Impact of Seabed Resuspension on Oxygen and Nitrogen Dynamics in the Northern Gulf of Mexico: A Numerical Modeling Study
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Controls on Carbonate System Dynamics in a Coastal Plain Estuary: A Modeling Study
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Modeling Spatiotemporal Patterns of Ecosystem Metabolism and Organic Carbon Dynamics Affecting Hypoxia on the Louisiana Continental Shelf
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Optical modeling of the upper ocean in relation to its biogenous matter content (case I waters)
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Future phytoplankton diversity in a changing climate
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Sediment Oxygen Demand Model: Methane and Ammonia Oxidation
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Seagrass habitat metabolism increases short-term extremes and long-term offset of CO 2 under future ocean acidification
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Coastal marine eutrophication: A definition, social causes, and future concerns
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The relative contribution of benthic microalgae to total microalgal production in a shallow sub-tidal estuarine environment
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Overview of water quality modeling
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Plankton functional type modelling: running before we can walk?
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Castles built on sand: dysfunctionality in plankton models and the inadequacy of dialogue between biologists and modellers
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Hypoxia and acidification in ocean ecosystems: coupled dynamics and effects on marine life
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Modeling Impacts of Nutrient Loading, Warming, and Boundary Exchanges on Hypoxia and Metabolism in a Shallow Estuarine Ecosystem
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LIGHT AND TEMPERATURE DEPENDENCE OF THE CARBON TO CHLOROPHYLL a RATIO IN MICROALGAE AND CYANOBACTERIA: IMPLICATIONS FOR PHYSIOLOGY AND GROWTH OF PHYTOPLANKTON
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SOME THOUGHTS ON NUTRIENT LIMITATION IN ALGAE1
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Blooms Like It Hot
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Improving the accuracy and utility of harmful algal bloom forecasting systems
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Gulf of Mexico Hypoxia, A.K.A. “The Dead Zone”
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An Unstructured Grid, Finite-Volume, Three-Dimensional, Primitive Equations Ocean Model: Application to Coastal Ocean and Estuaries
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An underwater light attenuation scheme for marine ecosystem models
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A review of hydrological/water-quality models
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Study of the seasonality and hydrology as drivers of phytoplankton abundance and composition in a shallow estuary, Weeks Bay, Alabama (USA)
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Linking Landscape and Water Quality in the Mississippi River Basin for 200 Years
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Multiple regression models for hindcasting and forecasting midsummer hypoxia in the Gulf of Mexico
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Model Uncertainty, Data Mining and Statistical Inference
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Using coupled models to study the effects of river discharge on biogeochemical cycling and hypoxia in the northern Gulf Of Mexico
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Significance of biomass and light availability to phytoplankton productivity in San Francisco Bay
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Modeling estuarine response to load reductions in a warmer climate: York River Estuary, Virginia, USA
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Dynamic model of phytoplankton growth and acclimation:responses of the balanced growth rate and the chlorophyll a:carbon ratio to light, nutrient-limitation and temperature
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Application of an Unstructured Grid-Based Water Quality Model to Chesapeake Bay and Its Adjacent Coastal Ocean
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Modelling Dissolved Oxygen/Sediment Oxygen Demand under Ice in a Shallow Eutrophic Prairie Reservoir
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UPTAKE OF NEW AND REGENERATED FORMS OF NITROGEN IN PRIMARY PRODUCTIVITY1
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The assumptions and rationales of a computer model of phytoplankton population dynamics1
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An empirical model of the phytoplankton chlorophyll : carbon ratio‐the conversion factor between productivity and growth rate
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A dynamic regulatory model of phytoplanktonic acclimation to light, nutrients, and temperature
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Spatiotemporal variability and long-term trends of ocean acidification in the California Current System
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Physical and biogeochemical controls on light attenuation in a eutrophic, back-barrier estuary
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Numerical analysis of the primary processes controlling oxygen dynamics on the Louisiana shelf
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Parameterization of biogeochemical sediment–water fluxes using in situ measurements and a diagenetic model
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N and P as ultimate and proximate limiting nutrients in the northern Gulf of Mexico: implications for hypoxia reduction strategies
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Light availability in the coastal ocean: impact on the distribution of benthic photosynthetic organisms and their contribution to primary production
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Microphytobenthos production potential and contribution to bottom layer oxygen dynamics on the inner Louisiana continental shelf
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