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Group II intron splicing in vivo by first-step hydrolysis

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/j.1460-2075.1993.tb06212.xopenalex-snapshot

Interaction of intronic boundaries is required for the second splicing step efficiency of a group II intron.

inferredcites →https://doi.org/10.1006/jmbi.1996.0066openalex-snapshot

Two Competing Pathways for Self-splicing by Group II Introns: A Quantitative Analysis of Reaction Rates and Products

inferredcites →https://doi.org/10.1006/jmbi.1996.0845openalex-snapshot

Branch-site selection in a group II intron mediated by active recognition of the adenine amino group and steric exclusion of non-adenine functionalities

inferredcites →https://doi.org/10.1016/0022-2836(83)90086-4openalex-snapshot

Variation, transcription and circular RNAs of the mitochondrial gene for subunit I of cytochrome c oxidase

inferredcites →https://doi.org/10.1016/0022-2836(91)90183-7openalex-snapshot

Splice site selection and role of the lariat in a group II intron

inferredcites →https://doi.org/10.1016/0092-8674(80)90505-xopenalex-snapshot

Some yeast mitochondrial RNAs are circular

inferredcites →https://doi.org/10.1016/0092-8674(86)90755-5openalex-snapshot

A self-splicing RNA excises an intron lariat

inferredcites →https://doi.org/10.1016/0092-8674(91)90466-copenalex-snapshot

Isolation and characterization of the gene encoding yeast debranching enzyme

inferredcites →https://doi.org/10.1016/0092-8674(95)90092-6openalex-snapshot

A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility

inferredcites →https://doi.org/10.1016/0378-1119(89)90026-7openalex-snapshot

Comparative and functional anatomy of group II catalytic introns — a review

inferredcites →https://doi.org/10.1016/0968-0004(96)10049-9openalex-snapshot

RNA turnover and the control of mitochondrial gene expression

inferredcites →https://doi.org/10.1016/s0021-9258(18)62289-6openalex-snapshot

Assembly of the Mitochondrial Membrane System

inferredcites →https://doi.org/10.1016/s0021-9258(18)69089-1openalex-snapshot

Group II intron self-splicing. Alternative reaction conditions yield novel products.

inferredcites →https://doi.org/10.1016/s0021-9258(19)50289-7openalex-snapshot

Mutation of the conserved first nucleotide of a group II intron from yeast mitochondrial DNA reduces the rate but allows accurate splicing

inferredcites →https://doi.org/10.1016/s0021-9258(19)70224-5openalex-snapshot

Assembly of the mitochondrial membrane system. Structure and nucleotide sequence of the gene coding for subunit 1 of yeast cytochrme oxidase.

inferredcites →https://doi.org/10.1016/s0076-6879(96)64010-5openalex-snapshot

[8] Reactions catalyzed by group II introns in Vitro

inferredcites →https://doi.org/10.1016/s0076-6879(96)64026-9openalex-snapshot

[24] Transformation of Saccharomyces cerevisiae mitochondria using the biolistic gun

inferredcites →https://doi.org/10.1016/s0092-8674(00)80975-7openalex-snapshot

The DExH Box Protein Suv3p Is a Component of a Yeast Mitochondrial 3′-to-5′ Exoribonuclease That Suppresses Group I Intron Toxicity

inferredcites →https://doi.org/10.1016/s0092-8674(00)81932-7openalex-snapshot

Mobility of Yeast Mitochondrial Group II Introns: Engineering a New Site Specificity and Retrohoming via Full Reverse Splicing

inferredcites →https://doi.org/10.1016/s0968-0004(96)10049-9openalex-snapshot

RNA turnover and the control of mitochondrial gene expression

inferredcites →https://doi.org/10.1093/nar/18.6.1369openalex-snapshot

The nuclearSUV3-1mutation affects a variety of post-transcriptional processes in yeast mitochondria

inferredcites →https://doi.org/10.1093/nar/22.11.2057openalex-snapshot

Splicing defective mutants of theCOXIgene of yeast mitochondrial DNA: initial definition of the maturase domain of the group II intron AI2

inferredcites →https://doi.org/10.1093/nar/23.16.3357openalex-snapshot

A simple procedure for gel electrophoresis and Northern blotting of RNA

inferredcites →https://doi.org/10.1128/mcb.15.8.4479openalex-snapshot

Studies of Point Mutants Define Three Essential Paired Nucleotides in the Domain 5 Substructure of a Group II Intron

inferredcites →https://doi.org/10.1128/mcb.16.10.5896openalex-snapshot

Length Changes in the Joining Segment between Domains 5 and 6 of a Group II Intron Inhibit Self-Splicing and Alter 3′ Splice Site Selection

inferredcites →https://doi.org/10.1146/annurev.bi.64.070195.002251openalex-snapshot

STRUCTURE AND ACTIVITIES OF GROUP II INTRONS

inferredcites →https://doi.org/10.1146/annurev.ge.24.120190.000515openalex-snapshot

CONTROL OF MITOCHONDRIAL GENE EXPRESSION IN SACCHAROMYCES CEREVISIAE

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/imafungus.16.159349zenodo-depositor-declared

Characterization of the mitochondrial genomes for Ophiostoma ips and related taxa from various geographic origins and related species: large intron-rich genomes and complex intron arrangements

inferred← citeshttps://doi.org/10.1002/9781118906583.ch6openalex-snapshot

RNA METABOLISM AND TRANSCRIPT REGULATION

inferred← citeshttps://doi.org/10.1002/9781119312994.apr0548openalex-snapshot

RNA Metabolism and Transcript Regulation

inferred← citeshttps://doi.org/10.1002/9783527814527.ch6openalex-snapshot

Self‐Splicing Group II Introns

inferred← citeshttps://doi.org/10.1002/ejic.200401007openalex-snapshot

Group II Intron Ribozymes and Metal Ions – A Delicate Relationship

inferred← citeshttps://doi.org/10.1002/wrna.1339openalex-snapshot

Group II introns: versatile ribozymes and retroelements

inferred← citeshttps://doi.org/10.1002/yea.3893openalex-snapshot

Long‐read direct RNA sequencing of the mitochondrial transcriptome of Saccharomyces cerevisiae reveals condition‐dependent intron abundance

inferred← citeshttps://doi.org/10.1006/jmbi.1998.2021openalex-snapshot

Mutant alleles of the MRS2 gene of yeast nuclear DNA suppress mutations in the catalytic core of a mitochondrial group II intron 1 1Edited by J. Karn

inferred← citeshttps://doi.org/10.1007/978-1-4939-3070-8_8openalex-snapshot

Intron Biology, Focusing on Group II Introns, the Ancestors of Spliceosomal Introns

inferred← citeshttps://doi.org/10.1007/978-3-642-27426-8_19openalex-snapshot

The Diverse Active Sites in Splicing, Debranching, and MicroRNA Processing Around RNA Phosphodiester Bonds

inferred← citeshttps://doi.org/10.1007/978-3-642-56849-7_2openalex-snapshot

Introns, Splicing and Mobility

inferred← citeshttps://doi.org/10.1007/978-94-017-2027-4_3openalex-snapshot

Group II introns and expression of conjugative transfer functions in lactic acid bacteria

inferred← citeshttps://doi.org/10.1007/s004380000345openalex-snapshot

Variation in sequence and RNA editing within core domains of mitochondrial group II introns among plants

inferred← citeshttps://doi.org/10.1016/b978-0-12-370873-1.00034-4openalex-snapshot

Chloroplast RNA Splicing

inferred← citeshttps://doi.org/10.1016/b978-0-12-381286-5.00006-8openalex-snapshot

The Role of snRNAs in Spliceosomal Catalysis

inferred← citeshttps://doi.org/10.1016/bs.mie.2025.01.033openalex-snapshot

Hydrolytic endonucleolytic ribozyme (HYER): Systematic identification, characterization and potential application in nucleic acid manipulation

inferred← citeshttps://doi.org/10.1016/j.bbagrm.2019.06.001openalex-snapshot

The mechanism of splicing as told by group II introns: Ancestors of the spliceosome

inferred← citeshttps://doi.org/10.1016/j.bcmd.2006.11.001openalex-snapshot

A new RNA branching activity: The GIR1 ribozyme

inferred← citeshttps://doi.org/10.1016/j.cbpa.2008.10.005openalex-snapshot

Experimental analyses of the chemical dynamics of ribozyme catalysis

inferred← citeshttps://doi.org/10.1016/j.cell.2018.03.062openalex-snapshot

Transcriptome-wide Interrogation of the Functional Intronome by Spliceosome Profiling

inferred← citeshttps://doi.org/10.1016/j.gene.2005.03.023openalex-snapshot

Systematic screening of nuclear encoded proteins involved in the splicing metabolism of group II introns in yeast mitochondria

inferred← citeshttps://doi.org/10.1016/j.jmb.2003.09.071openalex-snapshot

An Alternative Route for the Folding of Large RNAs: Apparent Two-state Folding by a Group II Intron Ribozyme

inferred← citeshttps://doi.org/10.1016/j.molcel.2006.07.017openalex-snapshot

The Receptor for Branch-Site Docking within a Group II Intron Active Site

inferred← citeshttps://doi.org/10.1016/j.molcel.2007.05.020openalex-snapshot

trans-Splicing to Spliceosomal U2 snRNA Suggests Disruption of Branch Site-U2 Pairing during Pre-mRNA Splicing

inferred← citeshttps://doi.org/10.1016/j.sbi.2009.04.002openalex-snapshot

Structural insights into RNA splicing

inferred← citeshttps://doi.org/10.1016/j.tibs.2017.03.007openalex-snapshot

Structural Insights into the Mechanism of Group II Intron Splicing

inferred← citeshttps://doi.org/10.1016/s0168-6445(03)00020-2openalex-snapshot

Ribozymes: recent advances in the development of RNA tools

inferred← citeshttps://doi.org/10.1016/s0168-6445(99)00007-8openalex-snapshot

Ribozymes: the characteristics and properties of catalytic RNAs

inferred← citeshttps://doi.org/10.1016/s0168-9525(01)02324-1openalex-snapshot

The ins and outs of group II introns

inferred← citeshttps://doi.org/10.1016/s0959-440x(98)80062-6openalex-snapshot

The architectural organization and mechanistic function of group II intron structural elements

inferred← citeshttps://doi.org/10.1016/s1046-2023(02)00239-6openalex-snapshot

Group II introns: highly specific endonucleases with modular structures and diverse catalytic functions

inferred← citeshttps://doi.org/10.1016/s1097-2765(00)80043-xopenalex-snapshot

Ribozyme Catalysis from the Major Groove of Group II Intron Domain 5

inferred← citeshttps://doi.org/10.1016/s1097-2765(01)00300-8openalex-snapshot

Excision of Group II Introns as Circles

inferred← citeshttps://doi.org/10.1017/s1355838200991726openalex-snapshot

Pentamidine inhibits mitochondrial intron splicing and translation in Saccharomyces cerevisiae

inferred← citeshttps://doi.org/10.1017/s1355838298980165openalex-snapshot

Influence of substrate structure on in vitro ribozyme activity of a group II intron

inferred← citeshttps://doi.org/10.1017/s1355838298980724openalex-snapshot

More than one way to splice an RNA: Branching without a bulge and splicing without branching in group II introns

inferred← citeshttps://doi.org/10.1023/a:1002085605743openalex-snapshot

Group II introns and expression of conjugative transfer functions in lactic acid bacteria

inferred← citeshttps://doi.org/10.1038/nature13754openalex-snapshot

Lariat lessons

inferred← citeshttps://doi.org/10.1038/srep16829openalex-snapshot

Sequential splicing of a group II twintron in the marine cyanobacterium Trichodesmium

inferred← citeshttps://doi.org/10.1039/9781847557988-00201openalex-snapshot

Group II Introns: Catalysts for Splicing, Genomic Change and Evolution

inferred← citeshttps://doi.org/10.1039/9781849732512-00235openalex-snapshot

The Spliceosome and Its Metal Ions

inferred← citeshttps://doi.org/10.1046/j.1365-313x.2000.00679.xopenalex-snapshot

Defective splicing of the first nad4 intron is associated with lack of several complex I subunits in the Nicotiana sylvestris NMS1 nuclear mutant

inferred← citeshttps://doi.org/10.1046/j.1365-313x.2002.01207.xopenalex-snapshot

RNA splicing in higher plant mitochondria: determination of functional elements in group II intron from a chimeric cox II gene in electroporated wheat mitochondria

inferred← citeshttps://doi.org/10.1073/pnas.0603956103openalex-snapshot

Visualization of a group II intron in the 23S rRNA of a stable ribosome

inferred← citeshttps://doi.org/10.1073/pnas.0902020106openalex-snapshot

Protein-free small nuclear RNAs catalyze a two-step splicing reaction

inferred← citeshttps://doi.org/10.1073/pnas.0906762106openalex-snapshot

The spliceosome as ribozyme hypothesis takes a second step

inferred← citeshttps://doi.org/10.1073/pnas.0910277106openalex-snapshot

Linear group II intron RNAs can retrohome in eukaryotes and may use nonhomologous end-joining for cDNA ligation

inferred← citeshttps://doi.org/10.1073/pnas.162203299openalex-snapshot

The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum : Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants

inferred← citeshttps://doi.org/10.1073/pnas.231494498openalex-snapshot

Retrotransposition of a yeast group II intron occurs by reverse splicing directly into ectopic DNA sites

inferred← citeshttps://doi.org/10.1074/jbc.m110.210013openalex-snapshot

Relevance of the Branch Point Adenosine, Coordination Loop, and 3′ Exon Binding Site for in Vivo Excision of the Sinorhizobium meliloti Group II Intron RmInt1

inferred← citeshttps://doi.org/10.1074/jbc.m602695200openalex-snapshot

Excision of the Sinorhizobium meliloti Group II Intron RmInt1 as Circles in Vivo

inferred← citeshttps://doi.org/10.1080/713609236openalex-snapshot

Group II Introns: Structure and Catalytic Versatility of Large Natural Ribozymes

inferred← citeshttps://doi.org/10.1093/emboj/17.23.7091openalex-snapshot

Defining functional groups, core structural features and inter‐domain tertiary contacts essential for group II intron self‐splicing: a NAIM analysis

inferred← citeshttps://doi.org/10.1093/emboj/20.23.6866openalex-snapshot

Control of branch‐site choice by a group II intron

inferred← citeshttps://doi.org/10.1093/emboj/cdf359openalex-snapshot

Lariat formation and a hydrolytic pathway in plant chloroplast group II intron splicing

inferred← citeshttps://doi.org/10.1093/nar/27.11.2345openalex-snapshot

Group II intron splicing in chloroplasts: identification of mutations determining intron stability and fate of exon RNA

inferred← citeshttps://doi.org/10.1093/nar/27.19.3866openalex-snapshot

Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants

inferred← citeshttps://doi.org/10.1093/nar/gkl328openalex-snapshot

Multiple physical forms of excised group II intron RNAs in wheat mitochondria

inferred← citeshttps://doi.org/10.1093/nar/gkm031openalex-snapshot

Group II intron in Bacillus cereus has an unusual 3′ extension and splices 56 nucleotides downstream of the predicted site

inferred← citeshttps://doi.org/10.1093/nar/gkp994openalex-snapshot

Extensive mis-splicing of a bi-partite plant mitochondrial group II intron

inferred← citeshttps://doi.org/10.1093/nar/gkq709openalex-snapshot

Diversity and strength of internal outward-oriented promoters in group IIC-attC introns

inferred← citeshttps://doi.org/10.1093/nar/gkq847openalex-snapshot

Splicing of the Sinorhizobium meliloti RmInt1 group II intron provides evidence of retroelement behavior

inferred← citeshttps://doi.org/10.1093/nar/gkv1381openalex-snapshot

Circularization pathway of a bacterial group II intron

inferred← citeshttps://doi.org/10.1093/nar/gkv540openalex-snapshot

The RAD52-like protein ODB1 is required for the efficient excision of two mitochondrial introns spliced via first-step hydrolysis

inferred← citeshttps://doi.org/10.1101/226894openalex-snapshot

Transcriptome-wide interrogation of the functional intronome by spliceosome profiling

inferred← citeshttps://doi.org/10.1101/cshperspect.a003616openalex-snapshot

Group II Introns: Mobile Ribozymes that Invade DNA

inferred← citeshttps://doi.org/10.1101/gad.13.13.1729openalex-snapshot

Metal ion catalysis during group II intron self-splicing: parallels with the spliceosome

inferred← citeshttps://doi.org/10.1111/tpj.14862openalex-snapshot

DEK46 performs C‐to‐U editing of a specific site in mitochondrial nad7 introns that is critical for intron splicing and seed development in maize

inferred← citeshttps://doi.org/10.1126/science.1153803openalex-snapshot

Crystal Structure of a Self-Spliced Group II Intron

inferred← citeshttps://doi.org/10.1128/9781555819217.ch52openalex-snapshot

Mobile Bacterial Group II Introns at the Crux of Eukaryotic Evolution

inferred← citeshttps://doi.org/10.1128/jb.186.7.1991-1998.2004openalex-snapshot

A Conjugation-Based System for Genetic Analysis of Group II Intron Splicing inLactococcus lactis

inferred← citeshttps://doi.org/10.1128/microbiolspec.mdna3-0050-2014openalex-snapshot

Mobile Bacterial Group II Introns at the Crux of Eukaryotic Evolution

inferred← citeshttps://doi.org/10.1146/annurev-biophys-062215-011149openalex-snapshot

Group II Intron Self-Splicing

inferred← citeshttps://doi.org/10.1186/1759-8753-5-2openalex-snapshot

Biotechnological applications of mobile group II introns and their reverse transcriptases: gene targeting, RNA-seq, and non-coding RNA analysis

inferred← citeshttps://doi.org/10.1261/rna.039123.113openalex-snapshot

Predicted group II intron lineages E and F comprise catalytically active ribozymes

inferred← citeshttps://doi.org/10.1261/rna.1392009openalex-snapshot

The linear form of a group II intron catalyzes efficient autocatalytic reverse splicing, establishing a potential for mobility

inferred← citeshttps://doi.org/10.1261/rna.1649309openalex-snapshot

Group IIC intron mobility into attC sites involves a bulged DNA stem–loop motif

inferred← citeshttps://doi.org/10.1261/rna.2170910openalex-snapshot

Metal binding and substrate positioning by evolutionarily invariant U6 sequences in catalytically active protein-free snRNAs

inferred← citeshttps://doi.org/10.1261/rna.2655911openalex-snapshot

Recurrent insertion of 5′-terminal nucleotides and loss of the branchpoint motif in lineages of group II introns inserted in mitochondrial preribosomal RNAs

inferred← citeshttps://doi.org/10.1261/rna.5237804openalex-snapshot

A multiprotein complex involved in chloroplast group II intron splicing

inferred← citeshttps://doi.org/10.1261/rna.7140604openalex-snapshot

A horizontally acquired group II intron in the chloroplastpsbAgene of a psychrophilicChlamydomonas: In vitro self-splicing and genetic evidence for maturase activity

inferred← citeshttps://doi.org/10.1360/csb-2025-0378openalex-snapshot

Structural-functional dynamics of group II introns in plant mitochondria: splicing diversity-driven genome plasticity and regulatory adaptation

inferred← citeshttps://doi.org/10.1371/journal.pgen.1002534openalex-snapshot

The Retrohoming of Linear Group II Intron RNAs in Drosophila melanogaster Occurs by Both DNA Ligase 4–Dependent and –Independent Mechanisms

inferred← citeshttps://doi.org/10.1371/journal.pgen.1011416openalex-snapshot

Human cells contain myriad excised linear intron RNAs with links to gene regulation and potential utility as biomarkers

inferred← citeshttps://doi.org/10.1371/journal.pone.0003121openalex-snapshot

Group II Intron-Based Gene Targeting Reactions in Eukaryotes

inferred← citeshttps://doi.org/10.1515/bc.2007.090openalex-snapshot

Group II introns: structure, folding and splicing mechanism

inferred← citeshttps://doi.org/10.3109/10409231003796523openalex-snapshot

The tertiary structure of group II introns: implications for biological function and evolution

inferred← citeshttps://doi.org/10.3390/cells10082001openalex-snapshot

Organellar Introns in Fungi, Algae, and Plants

inferred← citeshttps://doi.org/10.3390/cells10082054openalex-snapshot

Transcriptional Landscape and Splicing Efficiency in Arabidopsis Mitochondria

inferred← citeshttps://doi.org/10.4161/rna.7.3.12089openalex-snapshot

Role of the snRNAs in spliceosomal active site

inferred← citeshttps://doi.org/10.4161/rna.7.6.13484openalex-snapshot

DEAD-box protein facilitated RNA folding in vivo

inferred← citeshttps://doi.org/10.4161/rna.8.3.15386openalex-snapshot

Splicing of an intervening sequence by protein-free human snRNAs

inferred← citeshttps://doi.org/10.64898/2025.12.30.696962openalex-snapshot

Structural basis for hydrolytic splicing of a circularly permuted group II intron

inferred← citeshttps://doi.org/10.70675/29eb14fdzf43cz4134z93bazdb1fc926cca9openalex-snapshot

Functional diversity within a ribosomal-like protein family in Arabidopsis thaliana

inferred← citeshttps://doi.org/10.70675/3cdb0bfbz7546z40a2za127z65fe428fe9d8openalex-snapshot

Les introns de groupe II bactériens associés au gène de stress groEL : mécanismes de mobilité génomique et impact physiologique

inferred← citeshttps://doi.org/10.70675/4d88af3bz18f5z4aabz85d7z64de43db6fefopenalex-snapshot

Structure and conformational rearrangements during splicing of the ribozyme component of group II introns

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