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Organellar Introns in Fungi, Algae, and Plants

https://doi.org/10.3390/cells10082001

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.200900036openalex-snapshot

Trans‐splicing of organelle introns – a detour to continuous RNAs

inferredcites →https://doi.org/10.1002/ece3.5056openalex-snapshot

Genome streamlining via complete loss of introns has occurred multiple times in lichenized fungal mitochondria

inferredcites →https://doi.org/10.1002/iub.489openalex-snapshot

How a neutral evolutionary ratchet can build cellular complexity

inferredcites →https://doi.org/10.1002/j.1460-2075.1987.tb02719.xopenalex-snapshot

Mutations at the lariat acceptor site allow self‐splicing of a group II intron without lariat formation.

inferredcites →https://doi.org/10.1002/j.1460-2075.1991.tb07965.xopenalex-snapshot

Group II twintron: an intron within an intron in a chloroplast cytochrome b‐559 gene.

inferredcites →https://doi.org/10.1002/pld3.208openalex-snapshot

Unraveling the role of the enigmatic MatK maturase in chloroplast group IIA intron excision

inferredcites →https://doi.org/10.1002/ps.1236openalex-snapshot

Cytochrome b gene structure and consequences for resistance to Qo inhibitor fungicides in plant pathogens

inferredcites →https://doi.org/10.1002/wrna.1583openalex-snapshot

tRNA introns: Presence, processing, and purpose

inferredcites →https://doi.org/10.1002/wrna.1589openalex-snapshot

Retroelement origins of pre‐mRNA splicing

inferredcites →https://doi.org/10.1006/jmbi.1993.1072openalex-snapshot

Requirements of a Group I Intron for Reactions at the 3′ Splice Site

inferredcites →https://doi.org/10.1006/jmbi.1996.0066openalex-snapshot

Two Competing Pathways for Self-splicing by Group II Introns: A Quantitative Analysis of Reaction Rates and Products

inferredcites →https://doi.org/10.1006/jmbi.2000.4460openalex-snapshot

Function of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase in RNA splicing. Role of the idiosyncratic N-terminal extension and different modes of interaction with different group I introns

inferredcites →https://doi.org/10.1007/3-540-29474-0openalex-snapshot

Homing Endonucleases and Inteins

inferredcites →https://doi.org/10.1007/3-540-29474-0_2openalex-snapshot

Homing Endonucleases and the Yeast Mitochondrial ω Locus — A Historical Perspective

inferredcites →https://doi.org/10.1007/3-540-29474-0_3openalex-snapshot

The LAGLIDADG Homing Endonuclease Family

inferredcites →https://doi.org/10.1007/3-540-29474-0_7openalex-snapshot

Group I Introns and Their Maturases: Uninvited, but Welcome Guests

inferredcites →https://doi.org/10.1007/978-1-4684-5251-8_2openalex-snapshot

Mitochondrial Introns as Mobile Genetic Elements: the Role of Intron-Encoded Proteins

inferredcites →https://doi.org/10.1007/978-3-642-22380-8openalex-snapshot

Organelle genetics : evolution of organelle genomes and gene expression

inferredcites →https://doi.org/10.1007/978-3-642-22380-8_13openalex-snapshot

Introns, Mobile Elements, and Plasmids

inferredcites →https://doi.org/10.1007/978-3-642-46244-3_1openalex-snapshot

Random Drift and the Shifting Balance Theory of Evolution

inferredcites →https://doi.org/10.1007/bf00175814openalex-snapshot

Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric coxI gene of Peperomia

inferredcites →https://doi.org/10.1007/bf00266918openalex-snapshot

Mitochondrial genetics

inferredcites →https://doi.org/10.1007/bf00271554openalex-snapshot

The yeast mitochondrial leucyl-tRNA synthetase is a splicing factor for the excision of several group I introns

inferredcites →https://doi.org/10.1007/bf00271736openalex-snapshot

Long range control circuits within mitochondria and between nucleus and mitochondria

inferredcites →https://doi.org/10.1007/bf00290141openalex-snapshot

Twintrons are not unique to the Euglena chloroplast genome: structure and evolution of a plastome cpn60 gene from a cryptomonad

inferredcites →https://doi.org/10.1007/bf00315775openalex-snapshot

The novel nuclear gene DSS-1 of Saccharomyces cerevisiae is necessary for mitochondrial biogenesis

inferredcites →https://doi.org/10.1007/pl00006493openalex-snapshot

A Group I Intron in the Nuclear Small Subunit rRNA Gene of Cryptendoxyla hypophloia, an Ascomycetous Fungus: Evidence for a New Major Class of Group I Introns

inferredcites →https://doi.org/10.1007/pl00006540openalex-snapshot

On the Possibility of Constructive Neutral Evolution

inferredcites →https://doi.org/10.1007/s00239-011-9442-7openalex-snapshot

Evolutionary Dynamics of the mS952 Intron: A Novel Mitochondrial Group II Intron Encoding a LAGLIDADG Homing Endonuclease Gene

inferredcites →https://doi.org/10.1007/s00253-021-11153-wopenalex-snapshot

Panorama of intron dynamics and gene rearrangements in the phylum Basidiomycota as revealed by the complete mitochondrial genome of Turbinellus floccosus

inferredcites →https://doi.org/10.1007/s00294-016-0652-9openalex-snapshot

Hoarding and horizontal transfer led to an expanded gene and intron repertoire in the plastid genome of the diatom, Toxarium undulatum (Bacillariophyta)

inferredcites →https://doi.org/10.1007/s00294-019-01027-0openalex-snapshot

Putative group I introns in the eukaryote nuclear internal transcribed spacers

inferredcites →https://doi.org/10.1007/s10267-012-0183-2openalex-snapshot

The mtDNA rps3 locus has been invaded by a group I intron in some species of Grosmannia

inferredcites →https://doi.org/10.1007/s11033-006-9002-1openalex-snapshot

Group I intron renders differential susceptibility of Candida albicans to Bleomycin

inferredcites →https://doi.org/10.1007/s13258-020-00923-xopenalex-snapshot

Comprehensive genomic analyses with 115 plastomes from algae to seed plants: structure, gene contents, GC contents, and introns

inferredcites →https://doi.org/10.1016/0022-2836(90)90386-zopenalex-snapshot

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

inferredcites →https://doi.org/10.1016/0022-2836(92)90819-6openalex-snapshot

Numerous group I introns with variable distributions in the ribosomal DNA of a lichen fungus

inferredcites →https://doi.org/10.1016/0092-8674(80)90344-xopenalex-snapshot

Sequence of introns and flanking exons in wild-type and box3 mutants of cytochrome b reveals an interlaced splicing protein coded by an intron

inferredcites →https://doi.org/10.1016/0092-8674(82)90168-4openalex-snapshot

RNA splicing in neurospora mitochondria. Characterization of new nuclear mutants with defects in splicing the mitochondrial large rrna

inferredcites →https://doi.org/10.1016/0092-8674(82)90297-5openalex-snapshot

Functional domains in introns: Trans-acting and cis-acting regions of intron 4 of the cob gene

inferredcites →https://doi.org/10.1016/0092-8674(84)90342-8openalex-snapshot

RNA splicing in neurospora mitochondria: Nuclear mutants defective in both splicing and 3′ end synthesis of the large rRNA

inferredcites →https://doi.org/10.1016/0092-8674(86)90755-5openalex-snapshot

A self-splicing RNA excises an intron lariat

inferredcites →https://doi.org/10.1016/0092-8674(87)90658-1openalex-snapshot

Multiple exon-binding sites in class II self-splicing introns

inferredcites →https://doi.org/10.1016/0092-8674(89)90245-6openalex-snapshot

A latent intron-encoded maturase is also an endonuclease needed for intron mobility

inferredcites →https://doi.org/10.1016/0092-8674(95)90027-6openalex-snapshot

Group II intron mobility occurs by target DNA-primed reverse transcription

inferredcites →https://doi.org/10.1016/0092-8674(95)90092-6openalex-snapshot

A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility

inferredcites →https://doi.org/10.1016/0378-1119(89)90034-6openalex-snapshot

Group I introns as mobile genetic elements: Facts and mechanistic speculations — a review

inferredcites →https://doi.org/10.1016/0968-0004(93)90008-bopenalex-snapshot

Group II and group III introns of twintrons: potential relationships with nuclear pre-mRNA introns

inferredcites →https://doi.org/10.1016/bs.pmbts.2018.07.001openalex-snapshot

Group I Intron-Based Therapeutics Through Trans-Splicing Reaction

inferredcites →https://doi.org/10.1016/j.bbagrm.2019.06.001openalex-snapshot

The mechanism of splicing as told by group II introns: Ancestors of the spliceosome

inferredcites →https://doi.org/10.1016/j.csbj.2016.12.006openalex-snapshot

Programmable Genome Editing Tools and their Regulation for Efficient Genome Engineering

inferredcites →https://doi.org/10.1016/j.cub.2008.11.067openalex-snapshot

The Puzzle of Plastid Evolution

inferredcites →https://doi.org/10.1016/j.cub.2009.01.033openalex-snapshot

A Likely Pathway for Formation of Mobile Group I Introns

inferredcites →https://doi.org/10.1016/j.ejop.2019.01.007openalex-snapshot

Recovery of an Acanthamoeba strain with two group I introns in the nuclear 18S rRNA gene

inferredcites →https://doi.org/10.1016/j.febslet.2013.01.057openalex-snapshot

Nested introns in an intron: Evidence of multi‐step splicing in a large intron of the human dystrophin pre‐mRNA

inferredcites →https://doi.org/10.1016/j.fgb.2011.05.006openalex-snapshot

A 971-bp insertion in the rns gene is associated with mitochondrial hypovirulence in a strain of Cryphonectria parasitica isolated from nature

inferredcites →https://doi.org/10.1016/j.fgb.2013.01.005openalex-snapshot

The mtDNA rns gene landscape in the Ophiostomatales and other fungal taxa: Twintrons, introns, and intron-encoded proteins

inferredcites →https://doi.org/10.1016/j.fgb.2014.01.004openalex-snapshot

A homing endonuclease with a switch: Characterization of a twintron encoded homing endonuclease

inferredcites →https://doi.org/10.1016/j.ijbiomac.2021.01.087openalex-snapshot

The first eleven mitochondrial genomes from the ectomycorrhizal fungal genus (Boletus) reveal intron loss and gene rearrangement

inferredcites →https://doi.org/10.1016/j.jmb.2006.09.083openalex-snapshot

Involvement of DEAD-box Proteins in Group I and Group II Intron Splicing. Biochemical Characterization of Mss116p, ATP Hydrolysis-dependent and -independent Mechanisms, and General RNA Chaperone Activity

inferredcites →https://doi.org/10.1016/j.jmb.2007.07.052openalex-snapshot

Coevolution of a Homing Endonuclease and Its Host Target Sequence

inferredcites →https://doi.org/10.1016/j.margen.2013.12.002openalex-snapshot

The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer

inferredcites →https://doi.org/10.1016/j.mib.2017.04.003openalex-snapshot

Mobile self-splicing introns and inteins as environmental sensors

inferredcites →https://doi.org/10.1016/j.mito.2007.09.005openalex-snapshot

Cis- and trans-splicing of group II introns in plant mitochondria

inferredcites →https://doi.org/10.1016/j.mito.2020.06.002openalex-snapshot

Variation in protein gene and intron content among land plant mitogenomes

inferredcites →https://doi.org/10.1016/j.molcel.2009.03.014openalex-snapshot

Global Regulators Orchestrate Group II Intron Retromobility

inferredcites →https://doi.org/10.1016/j.molcel.2019.03.008openalex-snapshot

Craving for Introns

inferredcites →https://doi.org/10.1016/j.protis.2009.02.003openalex-snapshot

Mitochondrial Group II Introns in the Raphidophycean Flagellate Chattonella spp. Suggest a Diatom-to-Chattonella Lateral Group II Intron Transfer

inferredcites →https://doi.org/10.1016/j.sbi.2017.05.002openalex-snapshot

The group II intron maturase: a reverse transcriptase and splicing factor go hand in hand

inferredcites →https://doi.org/10.1016/j.str.2016.03.024openalex-snapshot

Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity

inferredcites →https://doi.org/10.1016/j.tibs.2005.11.008openalex-snapshot

Atomic level architecture of group I introns revealed

inferredcites →https://doi.org/10.1016/j.tibs.2008.12.007openalex-snapshot

The ribozyme core of group II introns: a structure in want of partners

inferredcites →https://doi.org/10.1016/j.tig.2004.12.007openalex-snapshot

The natural history of group I introns

inferredcites →https://doi.org/10.1016/j.tig.2007.01.006openalex-snapshot

Mitochondrial introns: a critical view

inferredcites →https://doi.org/10.1016/j.tig.2009.07.003openalex-snapshot

Group I-intron trans-splicing and mRNA editing in the mitochondria of placozoan animals

inferredcites →https://doi.org/10.1016/j.tig.2017.07.009openalex-snapshot

Mobile Group II Introns as Ancestral Eukaryotic Elements

inferredcites →https://doi.org/10.1016/j.tig.2019.09.010openalex-snapshot

Introns: Good Day Junk Is Bad Day Treasure

inferredcites →https://doi.org/10.1016/s0021-9258(18)33086-2openalex-snapshot

Functional domains in introns. RNA processing intermediates in cis- and trans-acting mutants in the penultimate intron of the mitochondrial gene for cytochrome b.

inferredcites →https://doi.org/10.1016/s0092-8674(00)81586-xopenalex-snapshot

Retrohoming of a Bacterial Group II Intron

inferredcites →https://doi.org/10.1016/s0092-8674(02)00771-7openalex-snapshot

A DEAD-Box Protein Functions as an ATP-Dependent RNA Chaperone in Group I Intron Splicing

inferredcites →https://doi.org/10.1016/s0092-8674(85)80011-8openalex-snapshot

An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene

inferredcites →https://doi.org/10.1016/s0168-9525(01)02324-1openalex-snapshot

The ins and outs of group II introns

inferredcites →https://doi.org/10.1016/s0378-1119(02)00690-xopenalex-snapshot

Conservation of the positions of metazoan introns from sponges to humans

inferredcites →https://doi.org/10.1016/s0959-437x(05)80194-7openalex-snapshot

The recent origins of introns

inferredcites →https://doi.org/10.1016/s0960-9822(02)01187-9openalex-snapshot

The Closest Unicellular Relatives of Animals

inferredcites →https://doi.org/10.1017/s0033583505004063openalex-snapshot

Homing endonuclease structure and function

inferredcites →https://doi.org/10.1017/s1355838201010251openalex-snapshot

Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases

inferredcites →https://doi.org/10.1021/jacs.9b05721openalex-snapshot

Proximity Induced Splicing Utilizing Caged Split Inteins

inferredcites →https://doi.org/10.1038/332654a0openalex-snapshot

Independent evolution of structural and coding regions in a Neurospora mitochondrial intron

inferredcites →https://doi.org/10.1038/36142openalex-snapshot

Group II intron splicing in vivo by first-step hydrolysis

inferredcites →https://doi.org/10.1038/381332a0openalex-snapshot

Efficient integration of an intron RNA into double-stranded DNA by reverse splicing

inferredcites →https://doi.org/10.1038/nature04531openalex-snapshot

Introns and the origin of nucleus–cytosol compartmentalization

inferredcites →https://doi.org/10.1038/nature07410openalex-snapshot

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

inferredcites →https://doi.org/10.1038/nature11843openalex-snapshot

Crystal structure of Prp8 reveals active site cavity of the spliceosome

inferredcites →https://doi.org/10.1038/nature13790openalex-snapshot

Crystal structure of a eukaryotic group II intron lariat

inferredcites →https://doi.org/10.1038/nature19316openalex-snapshot

Cryo-EM structure of the spliceosome immediately after branching

inferredcites →https://doi.org/10.1038/nrg.2016.104openalex-snapshot

Genetic drift, selection and the evolution of the mutation rate

inferredcites →https://doi.org/10.1038/nrg2386openalex-snapshot

Horizontal gene transfer in eukaryotic evolution

inferredcites →https://doi.org/10.1038/nsmb.3220openalex-snapshot

Structure of a group II intron in complex with its reverse transcriptase

inferredcites →https://doi.org/10.1038/nsmb823openalex-snapshot

Intron-encoded homing endonuclease I-TevI also functions as a transcriptional autorepressor

inferredcites →https://doi.org/10.1038/nsmb957openalex-snapshot

A single active-site region for a group II intron

inferredcites →https://doi.org/10.1038/s41467-018-06678-0openalex-snapshot

Structural basis for the second step of group II intron splicing

inferredcites →https://doi.org/10.1038/s41580-019-0178-3openalex-snapshot

Intron definition, exon definition and back-splicing revisited

inferredcites →https://doi.org/10.1038/s41589-018-0142-0openalex-snapshot

Small molecules that target group II introns are potent antifungal agents

inferredcites →https://doi.org/10.1038/s41598-017-04094-wopenalex-snapshot

Multiple introns in a deep-sea Annelid (Decemunciger: Ampharetidae) mitochondrial genome

inferredcites →https://doi.org/10.1038/s41598-018-35926-yopenalex-snapshot

The mitochondrial genome of Endoconidiophora resinifera is intron rich

inferredcites →https://doi.org/10.1038/s41598-018-36684-7openalex-snapshot

Efficient system for upstream mRNA trans-splicing to generate covalent, head-to-tail, protein multimers

inferredcites →https://doi.org/10.1038/s41598-019-41238-6openalex-snapshot

Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127

inferredcites →https://doi.org/10.1038/s41598-019-44700-7openalex-snapshot

Dynamic evolution of mitochondrial genomes in Trebouxiophyceae, including the first completely assembled mtDNA from a lichen-symbiont microalga (Trebouxia sp. TR9)

inferredcites →https://doi.org/10.1038/s41598-019-48224-yopenalex-snapshot

A universal approach to investigate circRNA protein coding function

inferredcites →https://doi.org/10.1038/s41598-021-82040-7openalex-snapshot

Comparative mitochondrial genome analysis reveals intron dynamics and gene rearrangements in two Trametes species

inferredcites →https://doi.org/10.1038/srep16829openalex-snapshot

Sequential splicing of a group II twintron in the marine cyanobacterium Trichodesmium

inferredcites →https://doi.org/10.1042/bst0390169openalex-snapshot

Homing endonucleases residing within inteins: evolutionary puzzles awaiting genetic solutions

inferredcites →https://doi.org/10.1073/pnas.0407896101openalex-snapshot

The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function

inferredcites →https://doi.org/10.1073/pnas.0602076103openalex-snapshot

Mitochondrial genome of Trichoplax adhaerens supports Placozoa as the basal lower metazoan phylum

inferredcites →https://doi.org/10.1073/pnas.0702207104openalex-snapshot

The frailty of adaptive hypotheses for the origins of organismal complexity

inferredcites →https://doi.org/10.1073/pnas.0812503106openalex-snapshot

A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing

inferredcites →https://doi.org/10.1073/pnas.0909400107openalex-snapshot

An organellar maturase associates with multiple group II introns

inferredcites →https://doi.org/10.1073/pnas.0910277106openalex-snapshot

Linear group II intron RNAs can retrohome in eukaryotes and may use nonhomologous end-joining for cDNA ligation

inferredcites →https://doi.org/10.1073/pnas.1016295107openalex-snapshot

Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion

inferredcites →https://doi.org/10.1073/pnas.1107719108openalex-snapshot

Tapping natural reservoirs of homing endonucleases for targeted gene modification

inferredcites →https://doi.org/10.1073/pnas.1216223109openalex-snapshot

Drift-barrier hypothesis and mutation-rate evolution

inferredcites →https://doi.org/10.1073/pnas.1315742110openalex-snapshot

Enhanced group II intron retrohoming in magnesium-deficient Escherichia coli via selection of mutations in the ribozyme core

inferredcites →https://doi.org/10.1073/pnas.1404307111openalex-snapshot

DEAD-box protein CYT-19 is activated by exposed helices in a group I intron RNA

inferredcites →https://doi.org/10.1073/pnas.1422049112openalex-snapshot

Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes

inferredcites →https://doi.org/10.1073/pnas.85.16.6022openalex-snapshot

Recognition and cleavage site of the intron-encoded omega transposase.

inferredcites →https://doi.org/10.1073/pnas.89.5.1676openalex-snapshot

A protein required for RNA processing and splicing in Neurospora mitochondria is related to gene products involved in cell cycle protein phosphatase functions.

inferredcites →https://doi.org/10.1073/pnas.93.11.5619openalex-snapshot

Two mitochondrial group I introns in a metazoan, the sea anemone Metridium senile: one intron contains genes for subunits 1 and 3 of NADH dehydrogenase.

inferredcites →https://doi.org/10.1073/pnas.94.17.8994openalex-snapshot

A protein encoded by a group I intron in Aspergillus nidulans directly assists RNA splicing and is a DNA endonuclease

inferredcites →https://doi.org/10.1073/pnas.96.24.13880openalex-snapshot

Recurrent invasion and extinction of a selfish gene

inferredcites →https://doi.org/10.1080/02681219880000311openalex-snapshot

Characterization of a single group I intron in the 18S rRNA gene of the pathogenic fungusHistoplasma capsulatum

inferredcites →https://doi.org/10.1080/15476286.2015.1103427openalex-snapshot

Convergent evolution of twintron-like configurations: One is never enough

inferredcites →https://doi.org/10.1080/15476286.2020.1763024openalex-snapshot

Discovery of new group I-D introns leads to creation of subtypes and link to an adaptive response of the mitochondrial genome in fungi

inferredcites →https://doi.org/10.1080/24701394.2017.1404042openalex-snapshot

The intron landscape of the mtDNA cytb gene among the Ascomycota: introns and intron-encoded open reading frames

inferredcites →https://doi.org/10.1080/24701394.2019.1580272openalex-snapshot

Intron-encoded ribosomal proteins and N-acetyltransferases within the mitochondrial genomes of fungi: here today, gone tomorrow?

inferredcites →https://doi.org/10.1080/24701394.2019.1687691openalex-snapshot

The fungal mitochondrial Nad5 pan-genic intron landscape

inferredcites →https://doi.org/10.1086/342099openalex-snapshot

Order of Intron Removal Influences Multiple Splice Outcomes, Including a Two-Exon Skip, in a COL5A1 Acceptor-Site Mutation That Results in Abnormal Pro-α1(V) N-Propeptides and Ehlers-Danlos Syndrome Type I

inferredcites →https://doi.org/10.1093/emboj/19.18.5007openalex-snapshot

A three‐dimensional perspective on exon binding by a group II self‐splicing intron

inferredcites →https://doi.org/10.1093/gbe/evaa126openalex-snapshot

The Coevolution of Fungal Mitochondrial Introns and Their Homing Endonucleases (GIY-YIG and LAGLIDADG)

inferredcites →https://doi.org/10.1093/gbe/evr100openalex-snapshot

Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia

inferredcites →https://doi.org/10.1093/gbe/evs053openalex-snapshot

Reevaluating the Green Contribution to Diatom Genomes

inferredcites →https://doi.org/10.1093/gbe/evu039openalex-snapshot

Serial Gene Losses and Foreign DNA Underlie Size and Sequence Variation in the Plastid Genomes of Diatoms

inferredcites →https://doi.org/10.1093/gbe/evw011openalex-snapshot

Group II Intron-MediatedTrans-Splicing in the Gene-Rich Mitochondrial Genome of an Enigmatic Eukaryote,Diphylleia rotans

inferredcites →https://doi.org/10.1093/gbe/evw148openalex-snapshot

Localized Retroprocessing as a Model of Intron Loss in the Plant Mitochondrial Genome

inferredcites →https://doi.org/10.1093/gbe/evy103openalex-snapshot

Recurrent Loss, Horizontal Transfer, and the Obscure Origins of Mitochondrial Introns in Diatoms (Bacillariophyta)

inferredcites →https://doi.org/10.1093/genetics/123.1.97openalex-snapshot

Mutations in nuclear gene cyt-4 of Neurospora crassa result in pleiotropic defects in processing and splicing of mitochondrial RNAs.

inferredcites →https://doi.org/10.1093/jxb/erw296openalex-snapshot

Albino Leaf 2is involved in the splicing of chloroplast group I and II introns in rice

inferredcites →https://doi.org/10.1093/jxb/erx212openalex-snapshot

EMPTY PERICARP11 serves as a factor for splicing of mitochondrial nad1 intron and is required to ensure proper seed development in maize

inferredcites →https://doi.org/10.1093/molbev/msaa029openalex-snapshot

Extensive Shifts from Cis- to Trans-splicing of Gymnosperm Mitochondrial Introns

inferredcites →https://doi.org/10.1093/molbev/msh099openalex-snapshot

The Complete Mitochondrial DNA Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Highlights Distinctive Evolutionary Trends in the Chlorophyta and Suggests a Sister-Group Relationship Between the Ulvophyceae and Chlorophyceae

inferredcites →https://doi.org/10.1093/molbev/msj047openalex-snapshot

Origin and Evolution of the Chloroplast trnK (matK) Intron: A Model for Evolution of Group II Intron RNA Structures

inferredcites →https://doi.org/10.1093/molbev/mss088openalex-snapshot

Group I Intron–Mediated Trans-splicing in Mitochondria of Gigaspora rosea and a Robust Phylogenetic Affiliation of Arbuscular Mycorrhizal Fungi with Mortierellales

inferredcites →https://doi.org/10.1093/molbev/mss130openalex-snapshot

Loss of Two Introns from the Magnolia tripetala Mitochondrial cox2 Gene Implicates Horizontal Gene Transfer and Gene Conversion as a Novel Mechanism of Intron Loss

inferredcites →https://doi.org/10.1093/molbev/msx268openalex-snapshot

Signal, Uncertainty, and Conflict in Phylogenomic Data for a Diverse Lineage of Microbial Eukaryotes (Diatoms, Bacillariophyta)

inferredcites →https://doi.org/10.1093/molbev/msz198openalex-snapshot

Ancient Mitochondrial Gene Transfer between Fungi and the Orchids

inferredcites →https://doi.org/10.1093/nar/21.10.2389openalex-snapshot

A complex twintron is excised as four individual introns

inferredcites →https://doi.org/10.1093/nar/22.11.2057openalex-snapshot

Splicing defective mutants of theCOXIgene of yeast mitochondrial DNA: initial definition of the maturase domain of the group II intron AI2

inferredcites →https://doi.org/10.1093/nar/27.10.2115openalex-snapshot

Configuration of the catalytic GIY-YIG domain of intron endonuclease I-TevI: coincidence of computational and molecular findings

inferredcites →https://doi.org/10.1093/nar/29.18.3757openalex-snapshot

Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility

inferredcites →https://doi.org/10.1093/nar/29.5.1238openalex-snapshot

Phylogenetic relationships among group II intron ORFs

inferredcites →https://doi.org/10.1093/nar/30.7.1427openalex-snapshot

Comparative genomics and evolution of proteins involved in RNA metabolism

inferredcites →https://doi.org/10.1093/nar/gkaa313openalex-snapshot

Group II intron as cold sensor for self-preservation and bacterial conjugation

inferredcites →https://doi.org/10.1093/nar/gkaa773openalex-snapshot

Exon and protein positioning in a pre-catalytic group II intron RNP primed for splicing

inferredcites →https://doi.org/10.1093/nar/gkg153openalex-snapshot

Putative proteins related to group II intron reverse transcriptase/maturases are encoded by nuclear genes in higher plants

inferredcites →https://doi.org/10.1093/nar/gkh225openalex-snapshot

Recent horizontal intron transfer to a chloroplast genome

inferredcites →https://doi.org/10.1093/nar/gki341openalex-snapshot

Site-specific reverse splicing of a HEG-containing group I intron in ribosomal RNA

inferredcites →https://doi.org/10.1093/nar/gkn095openalex-snapshot

Lateral transfer of introns in the cryptophyte plastid genome

inferredcites →https://doi.org/10.1093/nar/gku140openalex-snapshot

Quaternary arrangement of an active, native group II intron ribonucleoprotein complex revealed by small-angle X-ray scattering

inferredcites →https://doi.org/10.1093/nar/gkx426openalex-snapshot

The DEAD-box helicase Mss116 plays distinct roles in mitochondrial ribogenesis and mRNA-specific translation

inferredcites →https://doi.org/10.1093/nar/gky414openalex-snapshot

Group I introns are widespread in archaea

inferredcites →https://doi.org/10.1093/nar/gkz1194openalex-snapshot

A functional twintron, ‘zombie’ twintrons and a hypermobile group II intron invading itself in plant mitochondria

inferredcites →https://doi.org/10.1093/nar/gkz468openalex-snapshot

A group II intron-encoded protein interacts with the cellular replicative machinery through the β-sliding clamp

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025788openalex-snapshot

Intron open reading frames as mobile elements and evolution of a group I intron

inferredcites →https://doi.org/10.1093/pcp/pcz083openalex-snapshot

MaizeEmpty Pericarp602Encodes a P-Type PPR Protein That Is Essential for Seed Development

inferredcites →https://doi.org/10.1094/phyto-07-20-0281-ropenalex-snapshot

Intraspecific Mitochondrial DNA Comparison of Mycopathogen Mycogone perniciosa Provides Insight Into Mitochondrial Transfer RNA Introns

inferredcites →https://doi.org/10.1101/087969589.37.451openalex-snapshot

18 Group I and Group II Ribozymes as RNPs: Clues to the Past and Guides to the Future

inferredcites →https://doi.org/10.1101/cshperspect.a003616openalex-snapshot

Group II Introns: Mobile Ribozymes that Invade DNA

inferredcites →https://doi.org/10.1101/cshperspect.a032375openalex-snapshot

Group II Intron RNPs and Reverse Transcriptases: From Retroelements to Research Tools

inferredcites →https://doi.org/10.1101/gad.11.21.2910openalex-snapshot

A bacterial group II intron encoding reverse transcriptase, maturase, and DNA endonuclease activities: biochemical demonstration of maturase activity and insertion of new genetic information within the intron

inferredcites →https://doi.org/10.1101/gad.1109003openalex-snapshot

Structural and biochemical analyses of DNA and RNA binding by a bifunctional homing endonuclease and group I intron splicing factor

inferredcites →https://doi.org/10.1101/gad.1162503openalex-snapshot

Two for the price of one: a bifunctional intron-encoded DNA endonuclease-RNA maturase

inferredcites →https://doi.org/10.1101/gad.1345105openalex-snapshot

Recruitment of host functions suggests a repair pathway for late steps in group II intron retrohoming

inferredcites →https://doi.org/10.1101/gad.8.13.1589openalex-snapshot

A group III intron is formed from domains of two individual group II introns.

inferredcites →https://doi.org/10.1101/gr.202895.115openalex-snapshot

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs

inferredcites →https://doi.org/10.1101/sqb.1987.052.01.027openalex-snapshot

Group II Intron Self-splicing: Development of Alternative Reaction Conditions and Identification of a Predicted Intermediate

inferredcites →https://doi.org/10.1104/pp.010908openalex-snapshot

The Treasure Trove of Algal Chloroplast Genomes. Surprises in Architecture and Gene Content, and Their Functional Implications

inferredcites →https://doi.org/10.1105/tpc.013169openalex-snapshot

The Mitochondrial Genome of Chara vulgaris: Insights into the Mitochondrial DNA Architecture of the Last Common Ancestor of Green Algae and Land Plants[W]

inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03581.xopenalex-snapshot

The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis ‐splicing of plastid ycf3 intron 2 in Arabidopsis thaliana

inferredcites →https://doi.org/10.1111/j.1574-6968.2000.tb09046.xopenalex-snapshot

Invasion of a multitude of genetic niches by mobile endonuclease genes

inferredcites →https://doi.org/10.1111/jeu.12334openalex-snapshot

The Chloroplast Genome of Euglena mutabilis—Cluster Arrangement, Intron Analysis, and Intrageneric Trends

inferredcites →https://doi.org/10.1111/jpy.12600openalex-snapshot

Origin and evolution of chloroplast group I introns in lichen algae

inferredcites →https://doi.org/10.1111/tpj.13550openalex-snapshot

The chloroplast RNA helicase ISE 2 is required for multiple chloroplast RNA processing steps in Arabidopsis thaliana

inferredcites →https://doi.org/10.1111/tpj.13551openalex-snapshot

Emp10 encodes a mitochondrial PPR protein that affects the cis‐splicing of nad2 intron 1 and seed development in maize

inferredcites →https://doi.org/10.1111/tpj.14030openalex-snapshot

The pentatricopeptide repeat protein EMPTY PERICARP 8 is required for the splicing of three mitochondrial introns and seed development in maize

inferredcites →https://doi.org/10.1111/tpj.15225openalex-snapshot

nMAT3 is an essential maturase splicing factor required for holo‐complex I biogenesis and embryo development in Arabidopsis thaliana plants

inferredcites →https://doi.org/10.1126/science.1172983openalex-snapshot

Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms

inferredcites →https://doi.org/10.1126/science.1190713openalex-snapshot

An Allosteric Self-Splicing Ribozyme Triggered by a Bacterial Second Messenger

inferredcites →https://doi.org/10.1126/science.2430332openalex-snapshot

Efficient Trans-Splicing of a Yeast Mitochondrial RNA Group II Intron Implicates a Strong 5′ Exon-Intron Interaction

inferredcites →https://doi.org/10.1128/jb.00675-09openalex-snapshot

Group I Introns and Inteins: Disparate Origins but Convergent Parasitic Strategies

inferredcites →https://doi.org/10.1128/mmbr.64.2.281-315.2000openalex-snapshot

Maintenance and Integrity of the Mitochondrial Genome: a Plethora of Nuclear Genes in the Budding Yeast

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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Characterization of the mitochondrial genomes for Ophiostoma ips and related taxa from various geographic origins and related species: large intron-rich genomes and complex intron arrangements

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Advances in Fungal Promoter Engineering for Enhancing Secondary Metabolite Biosynthesis

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The Evolution of Mitochondrial Genomes in Fungi

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Intron Homing

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Comparative analysis of mitochondrial genomes in Ceratocystis fimbriata complex across diverse hosts

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The enigma of introns: Intronic miRNA-directed mechanisms and alternative splicing diversify alternative oxidase potential in Vitis vinifera

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Natural variation in Miniature5 determines mitochondrial nad1 splicing and seed development in maize

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Highly Reactive Group I Introns Ubiquitous in Pathogenic Fungi

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Development and validation of a PCR-based detection assay for xerophilic Wallemia species informed by comparative mitogenomics

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The first mitochondrial genome of Calophyllum soulattri Burm.f.

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Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix (Xylariaceae: Xylariales)

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Evolution and codon usage bias of mitochondrial and nuclear genomes in Aspergillus section Flavi

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Mitogenomics and mitochondrial gene phylogeny decipher the evolution of Saccharomycotina yeasts

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Recurrent Modular Assembly Drives Independent Origins of Group II Introns Encoding LAGLIDADG Homing Endonucleases

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Nuclease genes occupy boundaries of genetic exchange between bacteriophages

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Plant organellar RNA maturation

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A cryptic plastid and a novel mitochondrial plasmid in Leucomyxa plasmidifera gen. and sp. nov. (Ochrophyta) push the frontiers of organellar biology

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Organellar genomic characterization of Anunuuluaehu liula representing a new genus and species of Phyllophoraceae (Gigartinales, Rhodophyta) from the mesophotic zone of Hawai‘i

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RNA elements and their biotechnological applications in plants

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Long‐read RNA ‐Seq for the discovery of long noncoding and antisense RNAs in plant organelles

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A New EBS2b-IBS2b Base Paring (A −8 /T −8 ) Improved the Gene-Targeting Efficiency of Thermotargetron in Escherichia coli

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Interconnected roles of fungal nuclear- and intron-encoded maturases: at the crossroads of mitochondrial intron splicing

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The mitogenome of Urnula craterium

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The compact mitogenome of Ceratocystiopsis pallidobrunnea

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Categorizing 161 plant (streptophyte) mitochondrial group II introns into 29 families of related paralogues finds only limited links between intron mobility and intron-borne maturases

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The first two mitochondrial genomes for the genus Ramaria reveal mitochondrial genome evolution of Ramaria and phylogeny of Basidiomycota

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Mitochondrial genome of Cordyceps blackwelliae: organization, transcription, and evolutionary insights into Cordyceps

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The Pet127 protein is a mitochondrial 5′-to-3′ exoribonuclease from the PD-(D/E)XK superfamily involved in RNA maturation and intron degradation in yeasts

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Group I introns: Structure, splicing and their applications in medical mycology

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Poaceae Chloroplast Genome Sequencing: Great Leap Forward in Recent Ten Years

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Occurrence frequency, molecular evolution and phylogenetic utility of Ulva-specific chloroplast group II intron infA-62 family

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Mitochondrial Genomics of Six Cacao Pathogens From the Basidiomycete Family Marasmiaceae

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From Genome Variation to Molecular Mechanisms: What we Have Learned From Yeast Mitochondrial Genomes?

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Mitochondrial Transcription of Entomopathogenic Fungi Reveals Evolutionary Aspects of Mitogenomes

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Refining Mitochondrial Intron Classification With ERPIN: Identification Based on Conservation of Sequence Plus Secondary Structure Motifs

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Editorial: Mitochondrial Genomes and Mitochondrion Related Gene Insights to Fungal Evolution

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The mitogenomes of Leptographium aureum, Leptographium sp., and Grosmannia fruticeta: expansion by introns

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Mitochondrial genome diversity across the subphylum Saccharomycotina

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Editorial: The significance of mitogenomics in mycology, volume II

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Codepoietic Generation of Meaningful Information in the Evolving Biosphere

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P-Type Pentatricopeptide Repeat Proteins YS1 and YS2 Function in Splicing of petB Intron to Maintain Chloroplast Homeostasis During Rice Seedling Development

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Structural Remodeling and Enzymatic Replacement Shape the Evolution of Organellar Group II Introns in Ulva

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DNA Barcoding and Intronic-ORF Structure Analyses of Cultivated Pyropia yezoensis in China: The Genetic Impact under Climate Change

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Characterization and Phylogenetic Analysis of the Complete Mitogenomes of Valsa mali and Valsa pyri

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Comparative Mitogenomics Reveals Intron Dynamics and Mitochondrial Gene Expression Shifts in Domesticated and Wild Pleurotus ostreatus

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The Complete Mitogenome of Alternaria brassicae Causing Black Spot Disease on Rapeseed-Mustard

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The Viruses of Botrytis cinerea and Beyond: Molecular Characterization of RNA Viruses and Retroplasmids

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