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Evaluating evolutionary history in the face of high gene tree discordance in Australian Gehyra (Reptilia: Gekkonidae)

https://doi.org/10.1038/hdy.2014.6

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-59745-251-9_17openalex-snapshot

DNA Sequence Polymorphism Analysis Using DnaSP

inferredcites →https://doi.org/10.1007/bf00120260openalex-snapshot

Karyotypic evolution in Gehyra (Gekkonidae: Reptilia) IV. Chromosome change and speciation

inferredcites →https://doi.org/10.1007/bf00292447openalex-snapshot

The evolution of a highly variable sex chromosome in Gehyra purpurascens (Gekkonidae)

inferredcites →https://doi.org/10.1007/s12686-009-9126-4openalex-snapshot

New primers for the amplification and sequencing of nuclear loci in a taxonomically wide set of reptiles and amphibians

inferredcites →https://doi.org/10.1016/j.jaridenv.2006.01.009openalex-snapshot

Cenozoic climatic change and the development of the arid vegetation in Australia

inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot

Gene tree discordance, phylogenetic inference and the multispecies coalescent

inferredcites →https://doi.org/10.1016/j.ympev.2011.08.012openalex-snapshot

Ancient drainages divide cryptic species in Australia’s arid zone: Morphological and multi-gene evidence for four new species of Beaked Geckos (Rhynchoedura)

inferredcites →https://doi.org/10.1016/j.ympev.2013.03.007openalex-snapshot

Delimiting species in recent radiations with low levels of morphological divergence: A case study in Australian Gehyra geckos

inferredcites →https://doi.org/10.1016/s0378-1119(02)01039-9openalex-snapshot

An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences

inferredcites →https://doi.org/10.1017/s0968047002000134openalex-snapshot

Underwood's classification of the geckos: a 21st century appreciation

inferredcites →https://doi.org/10.1038/nature07138openalex-snapshot

Rapid change in drift of the Australian plate records collision with Ontong Java plateau

inferredcites →https://doi.org/10.1038/nature12130openalex-snapshot

Inferring ancient divergences requires genes with strong phylogenetic signals

inferredcites →https://doi.org/10.1046/j.1420-9101.1992.5040661.xopenalex-snapshot

The population biology of Gehyra (Gekkonidae). III. Patterns of microgeographic variation

inferredcites →https://doi.org/10.1071/zo9790373openalex-snapshot

Karyotypic Evolution in Gehyra (Gekkonidae: Reptilia) I. The Gehyra Variegata-Punctata Complex.

inferredcites →https://doi.org/10.1071/zo9820093openalex-snapshot

Karyotypic Evolution in Gehyra (Gekkonidae: Reptilia) II.* A New Species from the Alligator Rivers Region in Northern Australia

inferredcites →https://doi.org/10.1071/zo9830723openalex-snapshot

Karyotypic Evolution in Gehyra (Gekkonidae: Reptilia) III.* The Gehyra australis Complex

inferredcites →https://doi.org/10.1073/pnas.0607004104openalex-snapshot

High-resolution species trees without concatenation

inferredcites →https://doi.org/10.1080/01621459.1952.10483441openalex-snapshot

Use of Ranks in One-Criterion Variance Analysis

inferredcites →https://doi.org/10.1080/10635150500354928openalex-snapshot

Inferring Phylogeny Despite Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1080/10635150601146041openalex-snapshot

Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence

inferredcites →https://doi.org/10.1080/10635150701311362openalex-snapshot

Profiling Phylogenetic Informativeness

inferredcites →https://doi.org/10.1080/10635150701429982openalex-snapshot

Species Trees from Gene Trees: Reconstructing Bayesian Posterior Distributions of a Species Phylogeny Using Estimated Gene Tree Distributions

inferredcites →https://doi.org/10.1080/10635150701701091openalex-snapshot

Delimiting Species without Monophyletic Gene Trees

inferredcites →https://doi.org/10.1086/319501openalex-snapshot

A New Statistical Method for Haplotype Reconstruction from Population Data

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btg225openalex-snapshot

CRANN: detecting adaptive evolution in protein-coding DNA sequences

inferredcites →https://doi.org/10.1093/bioinformatics/btp079openalex-snapshot

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

inferredcites →https://doi.org/10.1093/bioinformatics/btq539openalex-snapshot

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

inferredcites →https://doi.org/10.1093/bioinformatics/bts284openalex-snapshot

Anonymous nuclear loci in non-model organisms: making the most of high-throughput genome surveys

inferredcites →https://doi.org/10.1093/molbev/msn083openalex-snapshot

jModelTest: Phylogenetic Model Averaging

inferredcites →https://doi.org/10.1093/molbev/msp274openalex-snapshot

Bayesian Inference of Species Trees from Multilocus Data

inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot

MUSCLE: multiple sequence alignment with high accuracy and high throughput

inferredcites →https://doi.org/10.1093/sysbio/35.1.46openalex-snapshot

The Population Biology of Gehyra (Gekkonidae): Chromosome Change and Speciation

inferredcites →https://doi.org/10.1093/sysbio/46.3.523openalex-snapshot

Gene Trees in Species Trees

inferredcites →https://doi.org/10.1093/sysbio/syp057openalex-snapshot

Species Tree Discordance Traces to Phylogeographic Clade Boundaries in North American Fence Lizards (Sceloporus)

inferredcites →https://doi.org/10.1093/sysbio/syq047openalex-snapshot

Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods

inferredcites →https://doi.org/10.1093/sysbio/syq092openalex-snapshot

Recent and Rapid Speciation with Limited Morphological Disparity in the Genus Rattus

inferredcites →https://doi.org/10.1093/sysbio/syr003openalex-snapshot

Comparing Two Bayesian Methods for Gene Tree/Species Tree Reconstruction: Simulations with Incomplete Lineage Sorting and Horizontal Gene Transfer

inferredcites →https://doi.org/10.1093/sysbio/syr016openalex-snapshot

Estimating Species Trees: Practical and Theoretical Aspects

inferredcites →https://doi.org/10.1093/sysbio/syr025openalex-snapshot

Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data

inferredcites →https://doi.org/10.1093/sysbio/syr027openalex-snapshot

Estimating Species Trees from Unrooted Gene Trees

inferredcites →https://doi.org/10.1093/sysbio/syr094openalex-snapshot

Phylogeny Estimation of the Radiation of Western North American Chipmunks (Tamias) in the Face of Introgression Using Reproductive Protein Genes

inferredcites →https://doi.org/10.1093/sysbio/syr128openalex-snapshot

Is Recombination a Problem for Species-Tree Analyses?

inferredcites →https://doi.org/10.1098/rsbl.2007.0063openalex-snapshot

Evaluating molecular clock calibrations using Bayesian analyses with soft and hard bounds

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Phylogenetic relationships among gekkotan lizards inferred from C-mos nuclear DNA sequences and a new classification of the Gekkota

inferredcites →https://doi.org/10.1111/j.1365-2699.2007.01770.xopenalex-snapshot

Evidence for Gondwanan vicariance in an ancient clade of gecko lizards

inferredcites →https://doi.org/10.1111/j.1365-2699.2009.02149.xopenalex-snapshot

Molecular evidence for Gondwanan origins of multiple lineages within a diverse Australasian gecko radiation

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03899.xopenalex-snapshot

Birth of a biome: insights into the assembly and maintenance of the Australian arid zone biota

inferredcites →https://doi.org/10.1111/j.1420-9101.2008.01525.xopenalex-snapshot

Molecular phylogeny and divergence dates for Australasian elapids and sea snakes (hydrophiinae): evidence from seven genes for rapid evolutionary radiations

inferredcites →https://doi.org/10.1111/j.1420-9101.2010.02184.xopenalex-snapshot

Coming to America: multiple origins of New World geckos

inferredcites →https://doi.org/10.1111/j.1420-9101.2012.02460.xopenalex-snapshot

Morphological differentiation correlates with ecological but not with genetic divergence in aGehyragecko

inferredcites →https://doi.org/10.1111/j.1463-6409.2008.00330.xopenalex-snapshot

Out of the blue: a novel, trans‐Atlantic clade of geckos (Gekkota, Squamata)

inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00549.xopenalex-snapshot

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

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DIVERSIFICATION AND PERSISTENCE AT THE ARID-MONSOONAL INTERFACE: AUSTRALIA-WIDE BIOGEOGRAPHY OF THE BYNOE'S GECKO (HETERONOTIA BINOEI; GEKKONIDAE)

inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01097.xopenalex-snapshot

CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS

inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01260.xopenalex-snapshot

THE IMPACT OF GENE-TREE/SPECIES-TREE DISCORDANCE ON DIVERSIFICATION-RATE ESTIMATION

inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot

phytools: an R package for phylogenetic comparative biology (and other things)

inferredcites →https://doi.org/10.11646/zootaxa.2277.1.2openalex-snapshot

Molecular phylogeny of Australian Gehyra (Squamata: Gekkonidae) and taxonomic revision of Gehyra variegata in south-eastern Australia

inferredcites →https://doi.org/10.11646/zootaxa.2354.1.4openalex-snapshot

On the status and relationships of the gecko species Gehyra barea Kopstein 1926, with description of new specimens and a range extension

inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot

BEAST: Bayesian evolutionary analysis by sampling trees

inferredcites →https://doi.org/10.1371/journal.pbio.0040088openalex-snapshot

Relaxed Phylogenetics and Dating with Confidence

inferredcites →https://doi.org/10.1554/05-328.1openalex-snapshot

WHY DOES A TRAIT EVOLVE MULTIPLE TIMES WITHIN A CLADE? REPEATED EVOLUTION OF SNAKELIKE BODY FORM IN SQUAMATE REPTILES

inferredcites →https://doi.org/10.2307/2413266openalex-snapshot

Chromosomal Evolution and Speciation Revisited

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The Long and Honorable History of Monitors and Their Kin

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R: A Language and Environment for Statistical Computing

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Gehyra koira sp. nov. (Reptilia: Gekkonidae), A New Species of Lizard with Two Allopatric Subspecies from the Ord-Victoria Region of North-western Australia and a Key to the Gehyra australis Species Complex

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/zootaxa.4231.1.5zenodo-depositor-declared

Systematics of a small Gehyra (Squamata: Gekkonidae) from the Einasleigh Uplands, Queensland: description of a new range restricted species

inferred← citeshttps://doi.org/10.1007/978-3-319-93943-8_3openalex-snapshot

Evolutionary History

inferred← citeshttps://doi.org/10.1016/j.ympev.2016.12.009openalex-snapshot

In the shadows: Phylogenomics and coalescent species delimitation unveil cryptic diversity in a Cerrado endemic lizard (Squamata: Tropidurus)

inferred← citeshttps://doi.org/10.1016/j.ympev.2017.11.015openalex-snapshot

Cryptic diversity in Rhampholeon boulengeri (Sauria: Chamaeleonidae), a pygmy chameleon from the Albertine Rift biodiversity hotspot

inferred← citeshttps://doi.org/10.1093/evolut/qpaf103openalex-snapshot

Phylogenomics and biogeography of North American trechine cave beetles (Coleoptera:Carabidae) inferred from ultraconserved elements

inferred← citeshttps://doi.org/10.1093/molbev/msx268openalex-snapshot

Signal, Uncertainty, and Conflict in Phylogenomic Data for a Diverse Lineage of Microbial Eukaryotes (Diatoms, Bacillariophyta)

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Do Macrophylogenies Yield Stable Macroevolutionary Inferences? An Example from Squamate Reptiles

inferred← citeshttps://doi.org/10.1111/evo.13541openalex-snapshot

Diversification across biomes in a continental lizard radiation

inferred← citeshttps://doi.org/10.18195/issn.0312-3162.33(1).2018.001-050openalex-snapshot

Spots before the eyes: revision of the saxicoline geckos of the Gehyra punctata (Squamata: Gekkonidae) species complex in the Pilbara region of Western Australia

inferred← citeshttps://doi.org/10.7717/peerj.7971openalex-snapshot

Crypsis and convergence: integrative taxonomic revision of the Gehyra australis group (Squamata: Gekkonidae) from northern Australia

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