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The cap-snatching endonuclease of influenza virus polymerase resides in the PA subunit

https://doi.org/10.1038/nature07745
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Structural basis for the 3′‐5′ exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism.
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Structure of influenza virus RNP. I. Influenza virus nucleoprotein melts secondary structure in panhandle RNA and exposes the bases to the solvent.
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Influenza A Virus RNA Polymerase Subunit PB2 Is the Endonuclease Which Cleaves Host Cell mRNA and Functions Only as the Trimeric Enzyme
inferredcites →https://doi.org/10.1016/0092-8674(81)90449-9openalex-snapshot
A unique cap(m7GpppXm)-dependent influenza virion endonuclease cleaves capped RNAs to generate the primers that initiate viral RNA transcription
inferredcites →https://doi.org/10.1016/j.ab.2006.07.027openalex-snapshot
Thermofluor-based high-throughput stability optimization of proteins for structural studies
inferredcites →https://doi.org/10.1016/s0969-2126(01)00576-7openalex-snapshot
Crystal Structure of the Archaeal Holliday Junction Resolvase Hjc and Implications for DNA Recognition
inferredcites →https://doi.org/10.1021/bi0499056openalex-snapshot
DNA Cleavage by EcoRV Endonuclease: Two Metal Ions in Three Metal Ion Binding Sites
inferredcites →https://doi.org/10.1021/bi9828932openalex-snapshot
Metal Ion Catalysis of RNA Cleavage by the Influenza Virus Endonuclease
inferredcites →https://doi.org/10.1021/jm020334uopenalex-snapshot
Use of a Pharmacophore Model To Discover a New Class of Influenza Endonuclease Inhibitors
inferredcites →https://doi.org/10.1038/2352openalex-snapshot
The role of metals in catalysis by the restriction endonuclease BamHI
inferredcites →https://doi.org/10.1038/nature07106openalex-snapshot
Innate immunity induced by composition-dependent RIG-I recognition of hepatitis C virus RNA
inferredcites →https://doi.org/10.1038/nature07120openalex-snapshot
Crystal structure of the polymerase PAC–PB1N complex from an avian influenza H5N1 virus
inferredcites →https://doi.org/10.1038/nature07225openalex-snapshot
The structural basis for an essential subunit interaction in influenza virus RNA polymerase
inferredcites →https://doi.org/10.1038/nsmb.1421openalex-snapshot
The structural basis for cap binding by influenza virus polymerase subunit PB2
inferredcites →https://doi.org/10.1073/pnas.0507415102openalex-snapshot
The viral polymerase mediates adaptation of an avian influenza virus to a mammalian host
inferredcites →https://doi.org/10.1073/pnas.152456799openalex-snapshot
Minimum molecular architectures for transcription and replication of the influenza virus
inferredcites →https://doi.org/10.1074/jbc.275.9.6181openalex-snapshot
RNA and DNA Hydrolysis Are Catalyzed by the Influenza Virus Endonuclease
inferredcites →https://doi.org/10.1074/jbc.m300130200openalex-snapshot
Two Aromatic Residues in the PB2 Subunit of Influenza A RNA Polymerase Are Crucial for Cap Binding
inferredcites →https://doi.org/10.1084/jem.20051938openalex-snapshot
The polymerase complex genes contribute to the high virulence of the human H5N1 influenza virus isolate A/Vietnam/1203/04
inferredcites →https://doi.org/10.1093/emboj/20.8.2078openalex-snapshot
The active sites of the influenza cap‐dependent endonuclease are on different polymerase subunits
inferredcites →https://doi.org/10.1093/emboj/cdg109openalex-snapshot
Crucial role of CA cleavage sites in the cap‐snatching mechanism for initiating viral mRNA synthesis
inferredcites →https://doi.org/10.1093/nar/30.2.429openalex-snapshot
Definition of the minimal viral components required for the initiation of unprimed RNA synthesis by influenza virus RNA polymerase
inferredcites →https://doi.org/10.1128/aac.38.12.2827openalex-snapshot
Inhibition of cap (m7GpppXm)-dependent endonuclease of influenza virus by 4-substituted 2,4-dioxobutanoic acid compounds
inferredcites →https://doi.org/10.1128/aac.40.5.1189openalex-snapshot
A novel antiviral agent which inhibits the endonuclease of influenza viruses
inferredcites →https://doi.org/10.1128/aac.40.5.1304openalex-snapshot
Anti-influenza virus activities of 4-substituted 2,4-dioxobutanoic acid inhibitors
inferredcites →https://doi.org/10.1128/jvi.00600-06openalex-snapshot
Amino Acid Residues in the N-Terminal Region of the PA Subunit of Influenza A Virus RNA Polymerase Play a Critical Role in Protein Stability, Endonuclease Activity, Cap Binding, and Virion RNA Promoter Binding
inferredcites →https://doi.org/10.1128/jvi.68.3.1509-1515.1994openalex-snapshot
Recombinant influenza virus polymerase: requirement of both 5' and 3' viral ends for endonuclease activity
inferredcites →https://doi.org/10.1128/jvi.76.18.8989-9001.2002openalex-snapshot
A Single Amino Acid Mutation in the PA Subunit of the Influenza Virus RNA Polymerase Inhibits Endonucleolytic Cleavage of Capped RNAs
inferredcites →https://doi.org/10.1186/1472-6807-7-40openalex-snapshot
Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches
inferredcites →https://doi.org/10.1371/journal.ppat.1000136openalex-snapshot
Host Determinant Residue Lysine 627 Lies on the Surface of a Discrete, Folded Domain of Influenza Virus Polymerase PB2 Subunit

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Preventive and therapeutic effects of a super-multivalent sialylated filamentous bacteriophage against the influenza virus
inferred← citeshttps://doi.org/10.1016/j.bioorg.2021.105388openalex-snapshot
Exploration of the 2,3-dihydroisoindole pharmacophore for inhibition of the influenza virus PA endonuclease
inferred← citeshttps://doi.org/10.1016/j.bioorg.2024.107139openalex-snapshot
Optimization and biological evaluation of l-DOPA derivatives as potent influenza PAN endonuclease inhibitors with multi-site binding characteristics
inferred← citeshttps://doi.org/10.1016/j.bioorg.2026.110119openalex-snapshot
1,4-Dihydroxy-1,8-napthyridinone (DHN) analogs as HIV-1 reverse transcriptase-associated RNase H inhibitors
inferred← citeshttps://doi.org/10.1016/j.bmc.2010.05.035openalex-snapshot
Anti-influenza activity of phenethylphenylphthalimide analogs derived from thalidomide
inferred← citeshttps://doi.org/10.1016/j.bmc.2013.08.053openalex-snapshot
Phenyl substituted 3-hydroxypyridin-2(1H)-ones: Inhibitors of influenza A endonuclease
inferred← citeshttps://doi.org/10.1016/j.bmc.2015.07.046openalex-snapshot
Structural and computational study on inhibitory compounds for endonuclease activity of influenza virus polymerase
inferred← citeshttps://doi.org/10.1016/j.bmc.2018.07.046openalex-snapshot
Identification of influenza PA-Nter endonuclease inhibitors using pharmacophore- and docking-based virtual screening
inferred← citeshttps://doi.org/10.1016/j.bmcl.2013.12.026openalex-snapshot
Design of the influenza virus inhibitors targeting the PA endonuclease using 3D-QSAR modeling, side-chain hopping, and docking
inferred← citeshttps://doi.org/10.1016/j.bmcl.2016.08.038openalex-snapshot
Discovery of novel 5-hydroxy-4-pyridone-3-carboxy acids as potent inhibitors of influenza Cap-dependent endonuclease
inferred← citeshttps://doi.org/10.1016/j.bmcl.2020.127547openalex-snapshot
Dihydrodibenzothiepine: Promising hydrophobic pharmacophore in the influenza cap-dependent endonuclease inhibitor
inferred← citeshttps://doi.org/10.1016/j.cclet.2011.09.006openalex-snapshot
NMR identification of anti-influenza lead compound targeting at PAC subunit of H5N1 polymerase
inferred← citeshttps://doi.org/10.1016/j.ccr.2012.07.006openalex-snapshot
Viral enzymes containing magnesium: Metal binding as a successful strategy in drug design
inferred← citeshttps://doi.org/10.1016/j.cell.2017.04.021openalex-snapshot
The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity
inferred← citeshttps://doi.org/10.1016/j.cell.2019.05.033openalex-snapshot
Snatch-and-Grab Inhibitors to Fight the Flu
inferred← citeshttps://doi.org/10.1016/j.cell.2020.05.035openalex-snapshot
Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection
inferred← citeshttps://doi.org/10.1016/j.celrep.2019.03.063openalex-snapshot
The Influenza A Virus Endoribonuclease PA-X Usurps Host mRNA Processing Machinery to Limit Host Gene Expression
inferred← citeshttps://doi.org/10.1016/j.celrep.2019.12.020openalex-snapshot
The Cap-Snatching SFTSV Endonuclease Domain Is an Antiviral Target
inferred← citeshttps://doi.org/10.1016/j.celrep.2026.117921openalex-snapshot
An endonuclease inhibitor unlocks the PA-X shutoff mechanism in influenza A virus
inferred← citeshttps://doi.org/10.1016/j.chembiol.2023.11.011openalex-snapshot
Targeting cap1 RNA methyltransferases as an antiviral strategy
inferred← citeshttps://doi.org/10.1016/j.chemphys.2017.11.005openalex-snapshot
Binding affinity of the L-742,001 inhibitor to the endonuclease domain of A/H1N1/PA influenza virus variants: Molecular simulation approaches
inferred← citeshttps://doi.org/10.1016/j.chom.2017.10.003openalex-snapshot
Nuclear TRIM25 Specifically Targets Influenza Virus Ribonucleoproteins to Block the Onset of RNA Chain Elongation
inferred← citeshttps://doi.org/10.1016/j.cimid.2015.10.001openalex-snapshot
Identification of Hsp90 as a species independent H5N1 avian influenza A virus PB2 interacting protein
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2018.08.005openalex-snapshot
Identification of novel inhibitor against endonuclease subunit of Influenza pH1N1 polymerase: A combined molecular docking, molecular dynamics, MMPBSA, QMMM and ADME studies to combat influenza A viruses
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2018.12.009openalex-snapshot
In silico structure-based design of enhanced peptide inhibitors targeting RNA polymerase PAN-PB1C interaction
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2020.107241openalex-snapshot
Structure-based virtual screening of influenza virus RNA polymerase inhibitors from natural compounds: Molecular dynamics simulation and MM-GBSA calculation
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2026.109019openalex-snapshot
Bioinformatics and immunoinformatic approaches for structural modeling and vaccine design of the CCHFV whole genome to develop a novel broad-spectrum multiepitope vaccine candidate
inferred← citeshttps://doi.org/10.1016/j.coph.2016.08.003openalex-snapshot
Antiviral therapies on the horizon for influenza
inferred← citeshttps://doi.org/10.1016/j.coviro.2013.03.008openalex-snapshot
The polymerase of negative-stranded RNA viruses
inferred← citeshttps://doi.org/10.1016/j.coviro.2017.04.003openalex-snapshot
Biochemical principles and inhibitors to interfere with viral capping pathways
inferred← citeshttps://doi.org/10.1016/j.coviro.2019.01.006openalex-snapshot
Baloxavir marboxil: the new influenza drug on the market
inferred← citeshttps://doi.org/10.1016/j.coviro.2023.101363openalex-snapshot
Role of the viral polymerase during adaptation of influenza A viruses to new hosts
inferred← citeshttps://doi.org/10.1016/j.cytogfr.2014.05.002openalex-snapshot
IFIT1: A dual sensor and effector molecule that detects non-2′-O methylated viral RNA and inhibits its translation
inferred← citeshttps://doi.org/10.1016/j.drudis.2018.01.028openalex-snapshot
Influenza A virus polymerase: an attractive target for next-generation anti-influenza therapeutics
inferred← citeshttps://doi.org/10.1016/j.drudis.2020.11.014openalex-snapshot
Integrating molecular modelling methods to advance influenza A virus drug discovery
inferred← citeshttps://doi.org/10.1016/j.drudis.2022.02.024openalex-snapshot
Approaches for discovery of small-molecular antivirals targeting to influenza A virus PB2 subunit
inferred← citeshttps://doi.org/10.1016/j.ejmech.2018.10.063openalex-snapshot
Non-chelating p-phenylidene-linked bis-imidazoline analogs of known influenza virus endonuclease inhibitors: Synthesis and anti-influenza activity
inferred← citeshttps://doi.org/10.1016/j.ejmech.2020.112048openalex-snapshot
Synthesis and SARs of dopamine derivatives as potential inhibitors of influenza virus PAN endonuclease
inferred← citeshttps://doi.org/10.1016/j.ejmech.2021.113929openalex-snapshot
Discovery and optimization of new 6, 7-dihydroxy-1, 2, 3, 4-tetrahydroisoquinoline derivatives as potent influenza virus PAN inhibitors
inferred← citeshttps://doi.org/10.1016/j.ejmech.2024.116639openalex-snapshot
Design and synthesis of 7-membered lactam fused hydroxypyridinones as potent metal binding pharmacophores (MBPs) for inhibiting influenza virus PAN endonuclease
inferred← citeshttps://doi.org/10.1016/j.ejmech.2025.118105openalex-snapshot
A medicinal chemistry overview of direct-acting antivirals approved in 2013–2024 by US FDA
inferred← citeshttps://doi.org/10.1016/j.febslet.2013.02.048openalex-snapshot
Structure and assembly of the influenza A virus ribonucleoprotein complex
inferred← citeshttps://doi.org/10.1016/j.fsi.2026.111683openalex-snapshot
GCRV S5 and host EGR1 RNAs form chimeric RNA S5-AGUGA-EGR1: A novel mechanism regulating viral gene expression and host antiviral response
inferred← citeshttps://doi.org/10.1016/j.ijmm.2014.08.016openalex-snapshot
Influenza, a One Health paradigm—Novel therapeutic strategies to fight a zoonotic pathogen with pandemic potential
inferred← citeshttps://doi.org/10.1016/j.jbc.2021.100486openalex-snapshot
The active form of the influenza cap-snatching endonuclease inhibitor baloxavir marboxil is a tight binding inhibitor
inferred← citeshttps://doi.org/10.1016/j.jbc.2023.105415openalex-snapshot
Chikungunya virus nonstructural protein 1 is a versatile RNA capping and decapping enzyme
inferred← citeshttps://doi.org/10.1016/j.jcis.2020.09.012openalex-snapshot
Filamentous anti-influenza agents wrapping around viruses
inferred← citeshttps://doi.org/10.1016/j.jcoa.2025.100278openalex-snapshot
Rapid screening and identification of influenza virus polymerase inhibitors from Rubus idaeus L. by at-line nanofractionation
inferred← citeshttps://doi.org/10.1016/j.jconrel.2022.01.046openalex-snapshot
Strategies for fighting pandemic virus infections: Integration of virology and drug delivery
inferred← citeshttps://doi.org/10.1016/j.jcv.2011.05.013openalex-snapshot
Effect of reassortment on the nucleotide and amino acid changes of human A/H3N2 RNP subunits during 1998–2009
inferred← citeshttps://doi.org/10.1016/j.jep.2020.112945openalex-snapshot
Antiviral activity of furanocoumarins isolated from Angelica dahurica against influenza a viruses H1N1 and H9N2
inferred← citeshttps://doi.org/10.1016/j.jia.2023.12.040openalex-snapshot
H5N1 avian influenza virus PB2 antagonizes duck IFN-β signaling pathway by targeting mitochondrial antiviral signaling protein
inferred← citeshttps://doi.org/10.1016/j.jiac.2014.12.007openalex-snapshot
The N-terminal fragment of PA subunit of the influenza A virus effectively inhibits ribonucleoprotein (RNP) activity via suppression of its RNP expression
inferred← citeshttps://doi.org/10.1016/j.jinorgbio.2025.113210openalex-snapshot
Substituent size versus metal binding of inhibitors with variants of influenza endonuclease
inferred← citeshttps://doi.org/10.1016/j.jmb.2009.06.034openalex-snapshot
A Bridge Crosses the Active-Site Canyon of the Epstein–Barr Virus Nuclease with DNase and RNase Activities
inferred← citeshttps://doi.org/10.1016/j.jmb.2016.07.017openalex-snapshot
Molecular Mechanisms of Innate Immune Inhibition by Non-Segmented Negative-Sense RNA Viruses
inferred← citeshttps://doi.org/10.1016/j.jmb.2017.04.007openalex-snapshot
The NS1 Protein from Influenza Virus Stimulates Translation Initiation by Enhancing Ribosome Recruitment to mRNAs
inferred← citeshttps://doi.org/10.1016/j.jmb.2022.167460openalex-snapshot
PABP1 Drives the Selective Translation of Influenza A Virus mRNA
inferred← citeshttps://doi.org/10.1016/j.jpha.2025.101402openalex-snapshot
Establishment of an at-line nanofractionation-based screening platform for rapid identification of influenza PAN/PAN I38T inhibitors from Artemisiae Argyi Folium
inferred← citeshttps://doi.org/10.1016/j.jviromet.2013.09.005openalex-snapshot
Rapid sequencing of influenza A virus vRNA, cRNA and mRNA non-coding regions
inferred← citeshttps://doi.org/10.1016/j.meegid.2011.07.025openalex-snapshot
Multiple amino acid substitutions involved in enhanced pathogenicity of LPAI H9N2 in mice
inferred← citeshttps://doi.org/10.1016/j.meegid.2020.104181openalex-snapshot
The fit of codon usage of human-isolated avian influenza A viruses to human
inferred← citeshttps://doi.org/10.1016/j.micinf.2018.04.003openalex-snapshot
Biochemical characterization of avian influenza viral polymerase containing PA or PB2 subunit from human influenza A virus
inferred← citeshttps://doi.org/10.1016/j.molcel.2014.12.031openalex-snapshot
Cryo-EM Structure of Influenza Virus RNA Polymerase Complex at 4.3 Å Resolution
inferred← citeshttps://doi.org/10.1016/j.molcel.2015.11.016openalex-snapshot
Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains
inferred← citeshttps://doi.org/10.1016/j.molstruc.2018.03.090openalex-snapshot
Spectroscopic investigation, hirshfeld surface analysis and molecular docking studies on anti-viral drug entecavir
inferred← citeshttps://doi.org/10.1016/j.nexres.2025.100394openalex-snapshot
New approach to identification of viral receptor targets for a Transferrin peptide: Potential therapeutic insights against H1N1 and SARS-CoV-2
inferred← citeshttps://doi.org/10.1016/j.pbiomolbio.2014.08.004openalex-snapshot
Advantages of crystallographic fragment screening: Functional and mechanistic insights from a powerful platform for efficient drug discovery
inferred← citeshttps://doi.org/10.1016/j.pep.2013.08.002openalex-snapshot
Optimization of protein purification and characterization using Thermofluor screens
inferred← citeshttps://doi.org/10.1016/j.poly.2017.03.032openalex-snapshot
Metal-chelating properties and antiviral activity of some 2-hydroxyphenyl amides
inferred← citeshttps://doi.org/10.1016/j.psj.2026.106913openalex-snapshot
Distinct infectivity, pathogenicity, and adaptive evolution of clade 2.3.4.4 H5N2 avian influenza viruses in chickens in Taiwan
inferred← citeshttps://doi.org/10.1016/j.sbi.2009.12.007openalex-snapshot
Towards an atomic resolution understanding of the influenza virus replication machinery
inferred← citeshttps://doi.org/10.1016/j.sbi.2016.01.002openalex-snapshot
Towards a structural understanding of RNA synthesis by negative strand RNA viral polymerases
inferred← citeshttps://doi.org/10.1016/j.str.2009.03.019openalex-snapshot
Structural Basis for DNase Activity of a Conserved Protein Implicated in CRISPR-Mediated Genome Defense
inferred← citeshttps://doi.org/10.1016/j.str.2017.11.008openalex-snapshot
Second-Shell Basic Residues Expand the Two-Metal-Ion Architecture of DNA and RNA Processing Enzymes
inferred← citeshttps://doi.org/10.1016/j.tet.2019.04.021openalex-snapshot
Diels-Alder adducts of 3-N-substituted derivatives of (−)-Cytisine as influenza A/H1N1 virus inhibitors; stereodifferentiation of antiviral properties and preliminary assessment of action mechanism
inferred← citeshttps://doi.org/10.1016/j.tibs.2009.05.003openalex-snapshot
Re-capping the message
inferred← citeshttps://doi.org/10.1016/j.tim.2014.01.010openalex-snapshot
Bat-derived influenza-like viruses H17N10 and H18N11
inferred← citeshttps://doi.org/10.1016/j.tim.2018.12.013openalex-snapshot
Interplay between Influenza Virus and the Host RNA Polymerase II Transcriptional Machinery
inferred← citeshttps://doi.org/10.1016/j.tim.2019.12.006openalex-snapshot
The Cap-Snatching Mechanism of Bunyaviruses
inferred← citeshttps://doi.org/10.1016/j.tips.2009.03.002openalex-snapshot
Emerging antiviral targets for influenza A virus
inferred← citeshttps://doi.org/10.1016/j.tips.2011.10.004openalex-snapshot
Emerging cellular targets for influenza antiviral agents
inferred← citeshttps://doi.org/10.1016/j.vetmic.2026.111044openalex-snapshot
PA-X I94V mutation modulates the pathogenicity of the highly pathogenic H7N9 influenza A virus in mice and chickens
inferred← citeshttps://doi.org/10.1016/j.vetmic.2026.111120openalex-snapshot
The N-terminal region of pdm09/H1N1 PA synergizes with its cognate NP to enhance mammalian adaptation of avian-origin H9N2 canine influenza virus
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