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Intron retention is regulated by altered MeCP2-mediated splicing factor recruitment

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Gadd45a and Gadd45b modulate innate immune functions of granulocytes and macrophages by differential regulation of p38 and JNK signaling

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Nuclear Envelope and Chromatin Compositional Differences Comparing Undifferentiated and Retinoic Acid- and Phorbol Ester-Treated HL-60 Cells

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Gene Body Methylation Can Alter Gene Expression and Is a Therapeutic Target in Cancer

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Methylation-Dependent and -Independent Genomic Targeting Principles of the MBD Protein Family

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Orchestrated Intron Retention Regulates Normal Granulocyte Differentiation

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Endogenous Purification Reveals GREB1 as a Key Estrogen Receptor Regulatory Factor

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The Alternative Splicing Regulator Tra2b Is Required for Somitogenesis and Regulates Splicing of an Inhibitory Wnt11b Isoform

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HP1 Is Involved in Regulating the Global Impact of DNA Methylation on Alternative Splicing

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Peroxisomal Lipid Synthesis Regulates Inflammation by Sustaining Neutrophil Membrane Phospholipid Composition and Viability

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5-Azacytidine in myelodysplastic syndromes: A clinical practice guideline

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A Slow RNA Polymerase II Affects Alternative Splicing In Vivo

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BS69/ZMYND11 Reads and Connects Histone H3.3 Lysine 36 Trimethylation-Decorated Chromatin to Regulated Pre-mRNA Processing

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Dnmt3a and Dnmt3b Have Overlapping and Distinct Functions in Hematopoietic Stem Cells

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New connections between splicing and human disease

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The alternative role of DNA methylation in splicing regulation

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Stimulatory effect of splicing factors on transcriptional elongation

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Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition

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CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

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ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression

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Genome-wide characterization of the routes to pluripotency

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Human Tra2 proteins jointly control a CHEK1 splicing switch among alternative and constitutive target exons

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Epigenetic and transcriptional determinants of the human breast

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Large conserved domains of low DNA methylation maintained by Dnmt3a

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Intron retention is a widespread mechanism of tumor-suppressor inactivation

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

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The splicing factor SC35 has an active role in transcriptional elongation

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A brain-derived MeCP2 complex supports a role for MeCP2 in RNA processing

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Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2

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RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee

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Differential splicing across immune system lineages

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STAR: ultrafast universal RNA-seq aligner

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Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention

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inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot

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Adiponectin is produced by lymphocytes and is a negative regulator of granulopoiesis

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TET‐catalyzed oxidation of intragenic 5‐methylcytosine regulates CTCF‐dependent alternative splicing

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Chromatin context and ncRNA highlight targets of MeCP2 in brain

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Acanthamoeba castellanii exhibits intron retention during encystment

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Differential fates of introns in gene expression due to global alternative splicing

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Computational Methods for Intron Retention Identification and Quantification

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Secondhand smoke affects reproductive functions by altering the mouse testis transcriptome, and leads to select intron retention in Pde1a

inferred← citeshttps://doi.org/10.1016/j.immuni.2021.03.001openalex-snapshot

Atypical acute myeloid leukemia-specific transcripts generate shared and immunogenic MHC class-I-associated epitopes

inferred← citeshttps://doi.org/10.1016/j.jaut.2024.103306openalex-snapshot

Alternative splicing and intron retention: Their profiles and roles in cutaneous fibrosis of systemic sclerosis

inferred← citeshttps://doi.org/10.1016/j.jplph.2026.154868openalex-snapshot

Intron retention as a hub for splicing regulation in plant environmental adaptation and developmental programming

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Chronic corticosterone exposure in rats induces sex-specific alterations in hypothalamic reelin fragments, MeCP2, and DNMT3a protein levels

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Antisense Oligonucleotide-Mediated Terminal Intron Retention of the SMN2 Transcript

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Aberrant spliceosome activity via elevated intron retention and upregulation and phosphorylation of SF3B1 in chronic lymphocytic leukemia

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Hierarchical regulation and molecular functions of co-transcriptional splicing

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Anything but Ordinary – Emerging Splicing Mechanisms in Eukaryotic Gene Regulation

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Targeting the splicing factor SNRPB inhibits endometrial cancer progression by retaining the POLD1 intron

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We skip to work: alternative splicing in normal and malignant myelopoiesis

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Novel thrombospondin-1 transcript exhibits distinctive expression and activity in thyroid tumorigenesis

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Aberrant DNA methylation as a diagnostic biomarker of diabetic embryopathy

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Intron retention and nuclear loss of SFPQ are molecular hallmarks of ALS

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Dissecting splicing decisions and cell-to-cell variability with designed sequence libraries

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Rett syndrome linked to defects in forming the MeCP2/Rbfox/LASR complex in mouse models

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Splicing regulation through biomolecular condensates and membraneless organelles

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RNA-binding proteins control gene expression and cell fate in the immune system

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DNA methylation analysis for screening and diagnostic testing in neurodevelopmental disorders

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Activity-dependent aberrations in gene expression and alternative splicing in a mouse model of Rett syndrome

inferred← citeshttps://doi.org/10.1073/pnas.2204179119openalex-snapshot

Truncated Tau caused by intron retention is enriched in Alzheimer’s disease cortex and exhibits altered biochemical properties

inferred← citeshttps://doi.org/10.1073/pnas.2309678120openalex-snapshot

Size matters: Fighting repeat expansion size in fragile X syndrome using antisense oligonucleotides

inferred← citeshttps://doi.org/10.1080/10985549.2025.2539755openalex-snapshot

Causes, Consequences and Challenges of Intron Retention in lncRNAs

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Modulating the expression of Chtop, a versatile regulator of gene-specific transcription and mRNA export

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Ctcf haploinsufficiency mediates intron retention in a tissue-specific manner

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EIciRNAs in focus: current understanding and future perspectives

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Age-dependent methylation in epigenetic clock CpGs is associated with G-quadruplex, co-transcriptionally formed RNA structures and tentative splice sites

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Staying true to yourself: mechanisms of DNA methylation maintenance in mammals

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Structural disruption of exonic stem–loops immediately upstream of the intron regulates mammalian splicing

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Macrophage development and activation involve coordinated intron retention in key inflammatory regulators

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CD44 alternative splicing senses intragenic DNA methylation in tumors via direct and indirect mechanisms

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CTCF as a regulator of alternative splicing: new tricks for an old player

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Increased chromatin accessibility facilitates intron retention in specific cell differentiation states

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The changing paradigm of intron retention: regulation, ramifications and recipes

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Dynamic changes in intron retention are tightly associated with regulation of splicing factors and proliferative activity during B-cell development

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Diminished miRNA activity is associated with aberrant cytoplasmic intron retention in ALS pathogenesis

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CD44 alternative splicing is a sensor of intragenic DNA methylation in tumors

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Physiological intron retaining transcripts in the cytoplasm abound during human motor neurogenesis

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Increased intron retention is a post‐transcriptional signature associated with progressive aging and Alzheimer’s disease

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Prevalent intron retention fine‐tunes gene expression and contributes to cellular senescence

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Dynamic intron retention modulates gene expression in the monocytic differentiation pathway

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MECP2 and the biology of MECP2 duplication syndrome

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SUMOylation regulates pre‐mRNA splicing to overcome DNA damage in fungi

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Transcription elongation regulated by H2B deubiquitination and H2A .Z eviction enables fungal virulence

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Synergistic intragenic epigenetic deregulation by IDH2 and SRSF2 mutations causes mis-splicing of key transcriptional regulators

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Multi-omics data analysis reveals the biological implications of alternative splicing events in lung adenocarcinoma

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Data from Holding on to Junk Bonds: Intron Retention in Cancer and Therapy

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Holding on to Junk Bonds: Intron Retention in Cancer and Therapy

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Population-dependent Intron Retention and DNA Methylation in Breast Cancer

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ZBTB33 Is Mutated in Clonal Hematopoiesis and Myelodysplastic Syndromes and Impacts RNA Splicing

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Alternative splicing plays key roles in response to stress across different stages of fighting in the fish Betta splendens

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Associations between DNA methylation and gene regulation depend on chromatin accessibility during transgenerational plasticity

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Switched alternative splicing events as attractive features in lung squamous cell carcinoma

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MeCP2 gates spatial learning-induced alternative splicing events in the mouse hippocampus

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A central role for MeCP2 in the epigenetic repression of miR-200c during epithelial-to-mesenchymal transition of glioma

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Intron retention enhances gene regulatory complexity in vertebrates

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Regulatory roles and mechanisms of alternative RNA splicing in adipogenesis and human metabolic health

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Regulation of oncogenic C-terminal truncated p53β protein isoform expression by SRSF3–UPF1 splicing and surveillance axis

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DNA methylation profiles in red blood cells of adult hens correlate with their rearing conditions

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An important class of intron retention events in human erythroblasts is regulated by cryptic exons proposed to function as splicing decoys

inferred← citeshttps://doi.org/10.1261/rna.075028.120openalex-snapshot

Antisense targeting of decoy exons can reduce intron retention and increase protein expression in human erythroblasts

inferred← citeshttps://doi.org/10.1371/journal.pgen.1009087openalex-snapshot

Quantitative analysis questions the role of MeCP2 as a global regulator of alternative splicing

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Alternative splicing of helicase-like transcription factor (Hltf): Intron retention-dependent activation of immune tolerance at the feto-maternal interface

inferred← citeshttps://doi.org/10.15698/mic2024.02.816openalex-snapshot

Replicative aging in yeast involves dynamic intron retention patterns associated with mRNA processing/export and protein ubiquitination

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Role of MeCP2 in oligodendrocyte lineage cells in Rett syndrome: review and inference

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Dysregulated Spliceosome Activity Involves Increased Intron Retention Plus Upregulation and Phosphorylation of SF3B1 in Chronic Lymphocytic Leukemia

inferred← citeshttps://doi.org/10.2217/epi-2018-0050openalex-snapshot

DNA methylation/hydroxymethylation regulate gene expression and alternative splicing during terminal granulopoiesis

inferred← citeshttps://doi.org/10.26508/lsa.202201593openalex-snapshot

IARA: a complete and curated atlas of the biogenesis of spliceosome machinery during RNA splicing

inferred← citeshttps://doi.org/10.3389/fgene.2020.00998openalex-snapshot

The Crosstalk Between Epigenetic Mechanisms and Alternative RNA Processing Regulation

inferred← citeshttps://doi.org/10.3389/fgene.2021.620859openalex-snapshot

MeCP2: The Genetic Driver of Rett Syndrome Epigenetics

inferred← citeshttps://doi.org/10.3389/fgene.2021.624290openalex-snapshot

The Molecular Functions of MeCP2 in Rett Syndrome Pathology

inferred← citeshttps://doi.org/10.3389/fncel.2019.00370openalex-snapshot

Interplay of LIS1 and MeCP2: Interactions and Implications With the Neurodevelopmental Disorders Lissencephaly and Rett Syndrome

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MeCP2 functions as a DNA methylation reader in immune homeostasis and cancer

inferred← citeshttps://doi.org/10.3390/biomedicines9091268openalex-snapshot

Splice and Dice: Intronic microRNAs, Splicing and Cancer

inferred← citeshttps://doi.org/10.3390/cancers12123738openalex-snapshot

Widespread Aberrant Alternative Splicing despite Molecular Remission in Chronic Myeloid Leukaemia Patients

inferred← citeshttps://doi.org/10.3390/cancers14030560openalex-snapshot

Alternative Splicing, Epigenetic Modifications and Cancer: A Dangerous Triangle, or a Hopeful One?

inferred← citeshttps://doi.org/10.3390/cancers15235689openalex-snapshot

Pan-Cancer Profiling of Intron Retention and Its Clinical Significance in Diagnosis and Prognosis

inferred← citeshttps://doi.org/10.3390/genes16080986openalex-snapshot

Intron Retention: A Reemerging Paradigm in RNA Biology and Post-Transcriptional Gene Regulation

inferred← citeshttps://doi.org/10.3390/ijms20040937openalex-snapshot

Gene-Specific Intron Retention Serves as Molecular Signature that Distinguishes Melanoma from Non-Melanoma Cancer Cells in Greek Patients

inferred← citeshttps://doi.org/10.3390/ijms221910213openalex-snapshot

The Expanding Role of Alternative Splicing in Vascular Smooth Muscle Cell Plasticity

inferred← citeshttps://doi.org/10.3390/plants9070911openalex-snapshot

First Come, First Served: Sui Generis Features of the First Intron

inferred← citeshttps://doi.org/10.4103/1673-5374.265549openalex-snapshot

Increased intron retention is linked to Alzheimer’s disease

inferred← citeshttps://doi.org/10.4103/1673-5374.371359openalex-snapshot

Enrichment of novel Tau isoform with altered biochemical properties in Alzheimer’s disease

inferred← citeshttps://doi.org/10.64898/2026.02.19.706780openalex-snapshot

Intron Retention Controls Localization of lncRNAs PURPL and MALAT1 to Promote Cell Proliferation and Migration

inferred← citeshttps://doi.org/10.64898/2026.09.10.26362533openalex-snapshot

Mapping intronic mutational hotspots by in silico mutagenesis enables single antisense oligonucleotide correction of multiple variants

inferred← citeshttps://doi.org/10.70675/b9d2d0e4z8d00z4bcfza57bz31ca5ed1866copenalex-snapshot

Stratégies de stimulation du transport axonal endogène du Bdnf comme piste thérapeutique dans le syndrome de Rett

inferred← citeshttps://doi.org/10.70675/d05116ccz5de4z4d60z98ebz918144463fdbopenalex-snapshot

The Role of Convergent Transcription in Regulating Alternative Splicing : Targeted Epigenetic Modification via Repurposed CRISPR/Cas9 System and Its Impact on Alternative Splicing Modulation

inferred← citeshttps://doi.org/10.70675/f23d8d55z764cz4603za028zf9f54d767039openalex-snapshot

Biais de composition nucléotidique des gènes et épissage alternatif

inferred← citeshttps://doi.org/10.70675/f69d2875zfa9fz4465z917eza8e7b93935c6openalex-snapshot

Etude de la contribution de l'hormone adipocytaire leptine dans la pathogenèse du syndrome de Rett

inferred← citeshttps://doi.org/10.7554/elife.111394openalex-snapshot

Intron Retention Controls Localization of lncRNAs PURPL and MALAT1 to Promote Cell Proliferation and Migration

inferred← citeshttps://doi.org/10.7554/elife.111394.1openalex-snapshot

Intron Retention Controls Localization of lncRNAs PURPL and MALAT1 to Promote Cell Proliferation and Migration

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