On the public citation graph
CD44 alternative splicing is a sensor of intragenic DNA methylation in tumors
0 signed · 108 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/mc.22919openalex-snapshot
The long non‐coding RNA MALAT1 promotes ovarian cancer progression by regulating RBFOX2‐mediated alternative splicing
inferredcites →https://doi.org/10.1002/path.4129openalex-snapshot
The splicing factor SRSF6 is amplified and is an oncoprotein in lung and colon cancers
inferredcites →https://doi.org/10.1002/wrna.1476openalex-snapshot
Alternative‐splicing defects in cancer: Splicing regulators and their downstream targets, guiding the way to novel cancer therapeutics
inferredcites →https://doi.org/10.1016/0092-8674(89)90639-9openalex-snapshot
A human lymphocyte homing receptor, the Hermes antigen, is related to cartilage proteoglycan core and link proteins
inferredcites →https://doi.org/10.1016/j.bbagrm.2015.01.004openalex-snapshot
hnRNP L inhibits CD44 V10 exon splicing through interacting with its upstream intron
inferredcites →https://doi.org/10.1016/j.bbcan.2010.03.003openalex-snapshot
Genome-wide hypomethylation in cancer may be a passive consequence of transformation
inferredcites →https://doi.org/10.1016/j.bbcan.2017.06.006openalex-snapshot
EMT transcription factors in cancer development re-evaluated: Beyond EMT and MET
inferredcites →https://doi.org/10.1016/j.canlet.2017.08.022openalex-snapshot
Osteopontin and their roles in hematological malignancies: Splice variants on the new avenues
inferredcites →https://doi.org/10.1016/j.cell.2013.02.034openalex-snapshot
Dynamic Integration of Splicing within Gene Regulatory Pathways
inferredcites →https://doi.org/10.1016/j.cell.2013.03.011openalex-snapshot
Methylation-Dependent and -Independent Genomic Targeting Principles of the MBD Protein Family
inferredcites →https://doi.org/10.1016/j.celrep.2015.01.038openalex-snapshot
HP1 Is Involved in Regulating the Global Impact of DNA Methylation on Alternative Splicing
inferredcites →https://doi.org/10.1016/j.celrep.2015.07.024openalex-snapshot
Role of DNA Methylation in Modulating Transcription Factor Occupancy
inferredcites →https://doi.org/10.1016/j.celrep.2016.02.063openalex-snapshot
Alternative Splicing of G9a Regulates Neuronal Differentiation
inferredcites →https://doi.org/10.1016/j.molcel.2014.03.044openalex-snapshot
How Slow RNA Polymerase II Elongation Favors Alternative Exon Skipping
inferredcites →https://doi.org/10.1016/j.molcel.2015.09.005openalex-snapshot
SRSF1-Regulated Alternative Splicing in Breast Cancer
inferredcites →https://doi.org/10.1016/j.neo.2016.07.007openalex-snapshot
DNMT1 Regulates Epithelial-Mesenchymal Transition and Cancer Stem Cells, Which Promotes Prostate Cancer Metastasis
inferredcites →https://doi.org/10.1016/s0960-9822(03)00432-9openalex-snapshot
Suv39h-Mediated Histone H3 Lysine 9 Methylation Directs DNA Methylation to Major Satellite Repeats at Pericentric Heterochromatin
inferredcites →https://doi.org/10.1038/416552aopenalex-snapshot
DNMT1 and DNMT3b cooperate to silence genes in human cancer cells
inferredcites →https://doi.org/10.1038/cr.2013.110openalex-snapshot
Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition
inferredcites →https://doi.org/10.1038/emboj.2011.91openalex-snapshot
KDM5B regulates embryonic stem cell self‐renewal and represses cryptic intragenic transcription
inferredcites →https://doi.org/10.1038/nature01153openalex-snapshot
Signal-dependent regulation of splicing via phosphorylation of Sam68
inferredcites →https://doi.org/10.1038/nature05918openalex-snapshot
Stability and flexibility of epigenetic gene regulation in mammalian development
inferredcites →https://doi.org/10.1038/nature07509openalex-snapshot
Alternative isoform regulation in human tissue transcriptomes
inferredcites →https://doi.org/10.1038/nature08514openalex-snapshot
Human DNA methylomes at base resolution show widespread epigenomic differences
inferredcites →https://doi.org/10.1038/nature10442openalex-snapshot
CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
inferredcites →https://doi.org/10.1038/nature14176openalex-snapshot
Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation
inferredcites →https://doi.org/10.1038/nature21373openalex-snapshot
Intragenic DNA methylation prevents spurious transcription initiation
inferredcites →https://doi.org/10.1038/ncomms15134openalex-snapshot
Intron retention is regulated by altered MeCP2-mediated splicing factor recruitment
inferredcites →https://doi.org/10.1038/ncomms1892openalex-snapshot
Alternative splicing of CD44 mRNA by ESRP1 enhances lung colonization of metastatic cancer cell
inferredcites →https://doi.org/10.1038/ncomms5581openalex-snapshot
BCLAF1 and its splicing regulator SRSF10 regulate the tumorigenic potential of colon cancer cells
inferredcites →https://doi.org/10.1038/ng.259openalex-snapshot
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
inferredcites →https://doi.org/10.1038/ng.322openalex-snapshot
Differential chromatin marking of introns and expressed exons by H3K36me3
inferredcites →https://doi.org/10.1038/ng1158openalex-snapshot
The role of DNA methylation in setting up chromatin structure during development
inferredcites →https://doi.org/10.1038/nsmb.1995openalex-snapshot
Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons
inferredcites →https://doi.org/10.1038/nsmb.2123openalex-snapshot
Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36
inferredcites →https://doi.org/10.1038/nsmb.2373openalex-snapshot
Argonaute proteins couple chromatin silencing to alternative splicing
inferredcites →https://doi.org/10.1038/nsmb.2518openalex-snapshot
DNA methylation dynamics in health and disease
inferredcites →https://doi.org/10.1038/nsmb1030openalex-snapshot
The human SWI/SNF subunit Brm is a regulator of alternative splicing
inferredcites →https://doi.org/10.1038/onc.2013.50openalex-snapshot
The RNA-binding protein Rbfox2: an essential regulator of EMT-driven alternative splicing and a mediator of cellular invasion
inferredcites →https://doi.org/10.1038/onc.2017.159openalex-snapshot
DNA methylation variations are required for epithelial-to-mesenchymal transition induced by cancer-associated fibroblasts in prostate cancer cells
inferredcites →https://doi.org/10.1038/s41375-018-0021-4openalex-snapshot
We skip to work: alternative splicing in normal and malignant myelopoiesis
inferredcites →https://doi.org/10.1042/bst20170574openalex-snapshot
Mammalian DNA methyltransferases: new discoveries and open questions
inferredcites →https://doi.org/10.1073/pnas.0507856102openalex-snapshot
Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2
inferredcites →https://doi.org/10.1073/pnas.1109475108openalex-snapshot
Pre-mRNA splicing is a determinant of histone H3K36 methylation
inferredcites →https://doi.org/10.1073/pnas.1708447114openalex-snapshot
Intragenic DNA methylation and BORIS-mediated cancer-specific splicing contribute to the Warburg effect
inferredcites →https://doi.org/10.1074/jbc.m203455200openalex-snapshot
The mCpG-binding Domain of Human MBD3 Does Not Bind to mCpG but Interacts with NuRD/Mi2 Components HDAC1 and MTA2
inferredcites →https://doi.org/10.1074/jbc.m301090200openalex-snapshot
The CD44 Alternative v9 Exon Contains a Splicing Enhancer Responsive to the SR Proteins 9G8, ASF/SF2, and SRp20
inferredcites →https://doi.org/10.1074/jbc.m302283200openalex-snapshot
Methyl-CpG Binding Domain 1 (MBD1) Interacts with the Suv39h1-HP1 Heterochromatic Complex for DNA Methylation-based Transcriptional Repression
inferredcites →https://doi.org/10.1074/jbc.m413654200openalex-snapshot
Transcriptional Repression and Heterochromatin Formation by MBD1 and MCAF/AM Family Proteins
inferredcites →https://doi.org/10.1080/15592294.2015.1078050openalex-snapshot
Integrated methylome and transcriptome analysis reveals novel regulatory elements in pediatric acute lymphoblastic leukemia
inferredcites →https://doi.org/10.1083/jcb.201001073openalex-snapshot
Sam68 regulates EMT through alternative splicing–activated nonsense-mediated mRNA decay of the SF2/ASF proto-oncogene
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/bts356openalex-snapshot
RSeQC: quality control of RNA-seq experiments
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btt650openalex-snapshot
MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btw354openalex-snapshot
MultiQC: summarize analysis results for multiple tools and samples in a single report
inferredcites →https://doi.org/10.1093/nar/27.11.2291openalex-snapshot
The human DNA methyltransferases (DNMTs) 1, 3a and 3b: coordinate mRNA expression in normal tissues and overexpression in tumors
inferredcites →https://doi.org/10.1093/nar/gkg332openalex-snapshot
The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase
inferredcites →https://doi.org/10.1093/nar/gkq1267openalex-snapshot
NSrp70 is a novel nuclear speckle-related protein that modulates alternative pre-mRNA splicing in vivo
inferredcites →https://doi.org/10.1093/nar/gkt035openalex-snapshot
Differential roles for MBD2 and MBD3 at methylated CpG islands, active promoters and binding to exon sequences
inferredcites →https://doi.org/10.1093/nar/gkv013openalex-snapshot
Alternative splicing regulates the expression of G9A and SUV39H2 methyltransferases, and dramatically changes SUV39H2 functions
inferredcites →https://doi.org/10.1093/nar/gkw257openalex-snapshot
deepTools2: a next generation web server for deep-sequencing data analysis
inferredcites →https://doi.org/10.1093/nar/gkw377openalex-snapshot
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
inferredcites →https://doi.org/10.1093/nar/gkx900openalex-snapshot
Independence between pre-mRNA splicing and DNA methylation in an isogenic minigene resource
inferredcites →https://doi.org/10.1101/gad.1536807openalex-snapshot
Functional cooperation between HP1 and DNMT1 mediates gene silencing
inferredcites →https://doi.org/10.1101/gad.237206.113openalex-snapshot
An integrative analysis of colon cancer identifies an essential function for PRPF6 in tumor growth
inferredcites →https://doi.org/10.1101/gad.241968.114openalex-snapshot
Cell type-restricted activity of hnRNPM promotes breast cancer metastasis via regulating alternative splicing
inferredcites →https://doi.org/10.1101/gr.125872.111openalex-snapshot
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
inferredcites →https://doi.org/10.1101/gr.143503.112openalex-snapshot
DNA-methylation effect on cotranscriptional splicing is dependent on GC architecture of the exon–intron structure
inferredcites →https://doi.org/10.1101/gr.162933.113openalex-snapshot
Endothelial, epithelial, and fibroblast cells exhibit specific splicing programs independently of their tissue of origin
inferredcites →https://doi.org/10.1101/gr.183368.114openalex-snapshot
The role of DNA methylation in directing the functional organization of the cancer epigenome
inferredcites →https://doi.org/10.1126/science.1184208openalex-snapshot
Regulation of Alternative Splicing by Histone Modifications
inferredcites →https://doi.org/10.1128/mcb.01174-12openalex-snapshot
RBFOX2 Is an Important Regulator of Mesenchymal Tissue-Specific Splicing in both Normal and Cancer Tissues
inferredcites →https://doi.org/10.1128/mcb.18.7.3647openalex-snapshot
RB and c-Myc Activate Expression of the E-Cadherin Gene in Epithelial Cells through Interaction with Transcription Factor AP-2
inferredcites →https://doi.org/10.1146/annurev-biochem-052610-091920openalex-snapshot
Programming of DNA Methylation Patterns
inferredcites →https://doi.org/10.1146/annurev-biochem-060614-034242openalex-snapshot
Regulation of Alternative Splicing Through Coupling with Transcription and Chromatin Structure
inferredcites →https://doi.org/10.1152/ajpcell.00009.2009openalex-snapshot
Oxidative stress-induced alternative splicing of transformer 2β (SFRS10) and CD44 pre-mRNAs in gastric epithelial cells
inferredcites →https://doi.org/10.1158/0008-5472.can-04-3294openalex-snapshot
Splicing Factor Tra2-β1 Is Specifically Induced in Breast Cancer and Regulates Alternative Splicing of theCD44Gene
inferredcites →https://doi.org/10.1158/0008-5472.can-06-1888openalex-snapshot
MIRA-Assisted Microarray Analysis, a New Technology for the Determination of DNA Methylation Patterns, Identifies Frequent Methylation of Homeodomain-Containing Genes in Lung Cancer Cells
inferredcites →https://doi.org/10.1172/jci57349openalex-snapshot
G9a interacts with Snail and is critical for Snail-mediated E-cadherin repression in human breast cancer
inferredcites →https://doi.org/10.1177/1010428318811525openalex-snapshot
Cell-adhesion molecules and their soluble forms: Promising predictors of “tumor progression” and relapse in leukemia
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1186/gb-2010-11-7-r70openalex-snapshot
Contrasting chromatin organization of CpG islands and exons in the human genome
inferredcites →https://doi.org/10.1186/gb-2012-13-9-r51openalex-snapshot
The GENCODE pseudogene resource
inferredcites →https://doi.org/10.1186/preaccept-3878619451311053openalex-snapshot
Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes
inferredcites →https://doi.org/10.1186/s12943-016-0579-2openalex-snapshot
EMT and stemness: flexible processes tuned by alternative splicing in development and cancer progression
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s13059-019-1644-0openalex-snapshot
Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity
inferredcites →https://doi.org/10.1186/s13148-016-0175-8openalex-snapshot
Genome-wide DNA methylation analysis of pseudohypoparathyroidism patients with GNAS imprinting defects
inferredcites →https://doi.org/10.1261/rna.051151.115openalex-snapshot
Transcriptional control of alternative splicing along time: Ideas change, experiments remain
inferredcites →https://doi.org/10.1261/rna.064865.117openalex-snapshot
The importance of DNA methylation of exons on alternative splicing
inferredcites →https://doi.org/10.1371/journal.pbio.1000506openalex-snapshot
The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers
inferredcites →https://doi.org/10.1371/journal.pgen.1002717openalex-snapshot
Psip1/Ledgf p52 Binds Methylated Histone H3K36 and Splicing Factors and Contributes to the Regulation of Alternative Splicing
inferredcites →https://doi.org/10.1371/journal.pgen.1006318openalex-snapshot
A Broad Set of Chromatin Factors Influences Splicing
inferredcites →https://doi.org/10.1371/journal.pone.0018844openalex-snapshot
Relationship between Gene Body DNA Methylation and Intragenic H3K9me3 and H3K36me3 Chromatin Marks
inferredcites →https://doi.org/10.1371/journal.pone.0099603openalex-snapshot
Genome-Wide Binding of MBD2 Reveals Strong Preference for Highly Methylated Loci
inferredcites →https://doi.org/10.15252/embj.201593235openalex-snapshot
TET‐catalyzed oxidation of intragenic 5‐methylcytosine regulates CTCF‐dependent alternative splicing
inferredcites →https://doi.org/10.18632/oncotarget.6879openalex-snapshot
Dlx-2 and glutaminase upregulate epithelial-mesenchymal transition and glycolytic switch
inferredcites →https://doi.org/10.2217/epi.15.39openalex-snapshot
Methyl-CpG-Binding Domain Proteins: Readers of the Epigenome
inferredcites →https://doi.org/10.3389/fimmu.2015.00154openalex-snapshot
CD44 Acts as a Signaling Platform Controlling Tumor Progression and Metastasis
inferredcites →https://doi.org/10.3892/or.2015.4110openalex-snapshot
CD44 alternative splicing and hnRNP A1 expression are associated with the metastasis of breast cancer
inferredcites →https://doi.org/10.4161/epi.22562openalex-snapshot
Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues
inferredcites →https://doi.org/10.4161/epi.6.11.17978openalex-snapshot
Maintenance of DNA methylation: Dnmt3b joins the dance
inferredcites →https://doi.org/10.4161/rna.6.5.9606openalex-snapshot
The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events
inferredcites →https://doi.org/10.59350/rfxks-m8r39openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.7554/elife.11752openalex-snapshot
A new view of transcriptome complexity and regulation through the lens of local splicing variations
inferredcites →https://doi.org/10.7554/elife.25384openalex-snapshot
MeCP2 regulates Tet1-catalyzed demethylation, CTCF binding, and learning-dependent alternative splicing of the BDNF gene in Turtle
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.