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Interactions between horizontally acquired genes create a fitness cost in Pseudomonas aeruginosa
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Rational engineering of Escherichia coli strains for plasmid biopharmaceutical manufacturing
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Characterization of pNI10 plasmid in Pseudomonas, and the construction of an improved Escherichia and Pseudomonas shuttle vector, pNUK73
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An improved Tn7-based system for the single-copy insertion of cloned genes into chromosomes of gram-negative bacteria
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Molecular Mechanisms of Antibacterial Multidrug Resistance
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Plasmids and the spread of resistance
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Identification of plasmids by PCR-based replicon typing
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Cost of Unneeded Proteins in E. coli Is Reduced after Several Generations in Exponential Growth
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Protein material costs: single atoms can make an evolutionary difference
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Exploring the costs of horizontal gene transfer
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In vitro transcription analysis of rpoD in Pseudomonas aeruginosa PAO1
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Lateral gene transfer and the nature of bacterial innovation
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What traits are carried on mobile genetic elements, and why?
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Positive epistasis between co-infecting plasmids promotes plasmid survival in bacterial populations
inferredcites →https://doi.org/10.1038/ncomms6208openalex-snapshot
Positive selection and compensatory adaptation interact to stabilize non-transmissible plasmids
inferredcites →https://doi.org/10.1038/nprot.2006.24openalex-snapshot
mini-Tn7 insertion in bacteria with single attTn7 sites: example Pseudomonas aeruginosa
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Strategies for helicase recruitment and loading in bacteria
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The RepA protein of plasmid pSC101 controls Escherichia coli cell division through the SOS response
inferredcites →https://doi.org/10.1073/pnas.0801269105openalex-snapshot
Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1
inferredcites →https://doi.org/10.1073/pnas.1017570108openalex-snapshot
Misfolded proteins impose a dosage-dependent fitness cost and trigger a cytosolic unfolded protein response in yeast
inferredcites →https://doi.org/10.1073/pnas.1204615109openalex-snapshot
Staphylococcal pathogenicity island interference with helper phage reproduction is a paradigm of molecular parasitism
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An inhibitor of SOS induction, specified by a plasmid locus in Escherichia coli.
inferredcites →https://doi.org/10.1093/bioinformatics/bti1136openalex-snapshot
Horizontal gene transfer depends on gene content of the host
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Fast and accurate short read alignment with Burrows–Wheeler transform
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Fast and accurate long-read alignment with Burrows–Wheeler transform
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HTSeq—a Python framework to work with high-throughput sequencing data
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High Expression Hampers Horizontal Gene Transfer
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The Complexity Hypothesis Revisited: Connectivity Rather Than Function Constitutes a Barrier to Horizontal Gene Transfer
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis
inferredcites →https://doi.org/10.1093/nar/gkq869openalex-snapshot
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes
inferredcites →https://doi.org/10.1093/nar/gkt942openalex-snapshot
Deep sequencing analyses expands the Pseudomonas aeruginosa AmpR regulon to include small RNA-mediated regulation of iron acquisition, heat shock and oxidative stress response
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The genetic basis of the fitness costs of antimicrobial resistance: a meta‐analysis approach
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The impact of prophages on bacterial chromosomes
inferredcites →https://doi.org/10.1111/j.1365-2958.2007.06051.xopenalex-snapshot
Intracellular levels and activity of PvdS, the major iron starvation sigma factor of Pseudomonas aeruginosa
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ParI , an orphan ParA family protein from P seudomonas putida KT 2440‐specific genomic island, interferes with the partition system of IncP ‐7 plasmids
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Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
inferredcites →https://doi.org/10.1126/science.1128794openalex-snapshot
Selective Silencing of Foreign DNA with Low GC Content by the H-NS Protein in Salmonella
inferredcites →https://doi.org/10.1126/science.1137550openalex-snapshot
An H-NS-like Stealth Protein Aids Horizontal DNA Transmission in Bacteria
inferredcites →https://doi.org/10.1128/aac.00783-09openalex-snapshot
Dispersal of Carbapenemase bla VIM-1 Gene Associated with Different Tn 402 Variants, Mercury Transposons, and Conjugative Plasmids in Enterobacteriaceae and Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1128/aem.05439-11openalex-snapshot
Broad-Host-Range Plasmids from Agricultural Soils Have IncP-1 Backbones with Diverse Accessory Genes
inferredcites →https://doi.org/10.1128/jb.00807-06openalex-snapshot
Defining the Pseudomonas aeruginosa SOS Response and Its Role in the Global Response to the Antibiotic Ciprofloxacin
inferredcites →https://doi.org/10.1128/jb.01515-09openalex-snapshot
Genome Diversity of Pseudomonas aeruginosa PAO1 Laboratory Strains
inferredcites →https://doi.org/10.1128/jb.175.4.1118-1125.1993openalex-snapshot
Cell division inhibitors SulA and MinCD prevent formation of the FtsZ ring
inferredcites →https://doi.org/10.1128/jb.185.7.2066-2079.2003openalex-snapshot
Identification, Timing, and Signal Specificity of Pseudomonas aeruginosa Quorum-Controlled Genes: a Transcriptome Analysis
inferredcites →https://doi.org/10.1128/jb.187.14.4728-4738.2005openalex-snapshot
The IncP-6 Plasmid Rms149 Consists of a Small Mobilizable Backbone with Multiple Large Insertions
inferredcites →https://doi.org/10.1128/mbio.01562-14openalex-snapshot
Linking System-Wide Impacts of RNA Polymerase Mutations to the Fitness Cost of Rifampin Resistance in Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1128/mmbr.62.2.434-464.1998openalex-snapshot
Replication and Control of Circular Bacterial Plasmids
inferredcites →https://doi.org/10.1186/gb-2003-4-5-p3openalex-snapshot
DAVID: Database for Annotation, Visualization, and Integrated Discovery
inferredcites →https://doi.org/10.1186/gb-2007-8-8-r156openalex-snapshot
Complexity, connectivity, and duplicability as barriers to lateral gene transfer
inferredcites →https://doi.org/10.1186/gb-2010-11-10-r106openalex-snapshot
Differential expression analysis for sequence count data
inferredcites →https://doi.org/10.1371/journal.pgen.1002181openalex-snapshot
Pervasive Sign Epistasis between Conjugative Plasmids and Drug-Resistance Chromosomal Mutations
inferredcites →https://doi.org/10.1371/journal.pone.0030619openalex-snapshot
NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
inferredcites →https://doi.org/10.3389/fcimb.2014.00054openalex-snapshot
Social behavior and decision making in bacterial conjugation
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Pseudomonas aeruginosa Heteroresistance to Levofloxacin Caused by Upregulated Expression of Essential Genes Involved in DNA Replication and Repair
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Nanotechnology for Targeted Detection and Removal of Bacteria: Opportunities and Challenges
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Compensatory evolution of chromosomes and plasmids counteracts the plasmid fitness cost
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Engineered Bionanomaterials for Precision Delivery of Nucleic Acid Drugs
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Methods to Study Fitness and Compensatory Adaptation in Plasmid-Carrying Bacteria
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Exploring the Ancestral Mechanisms of Regulation of Horizontally Acquired Nitrogenases
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Impact of multidrug resistance on the virulence and fitness of Pseudomonas aeruginosa: a microbiological and clinical perspective
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Multidrug-resistant plasmid modulates ammonia oxidation efficiency in Nitrosomonas europaea through cyclic di-guanylate and acyl-homoserine lactones pathways
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Reconsidering plasmid maintenance factors for computational plasmid design
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Parallel Compensatory Evolution Stabilizes Plasmids across the Parasitism-Mutualism Continuum
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Microbial Evolution: Towards Resolving the Plasmid Paradox
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The Ecology and Evolution of Pangenomes
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WITHDRAWN: Antibiotic resistance in Pseudomonas aeruginosa – mechanisms, epidemiology and evolution
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Antibiotic resistance in Pseudomonas aeruginosa – Mechanisms, epidemiology and evolution
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Plasmid pND6-1 enhances the stability and conjugative transfer of co-resident companion plasmid pND6-2 in the naphthalene-degradative Pseudomonas putida strain ND6
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Comparative selective pressure potential of antibiotics in the environment
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A toxin–antitoxin system confers stability to the IncP-7 plasmid pCAR1
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Conjugal transfer of catabolic plasmids by damaged bacterial cells: Rescuing genes for pesticide biodegradation
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Comparative genomic and functional annotation of Pseudomonas spp. genomes responsible for blue discoloration of Brazilian fresh soft cheese
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The novel potential multidrug-resistance biomarkers for Pseudomonas aeruginosa lung infections using transcriptomics data analysis
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The tigecycline resistance gene tetX has an expensive fitness cost based on increased outer membrane permeability and metabolic burden in Escherichia coli
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An agent-based lattice model for the emergence of anti-microbial resistance
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Antibiotic resistance genes are closely linked with bacterial functions during anoxic-oxic treatment process of pig wastewater
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The evolution of plasmid stability: Are infectious transmission and compensatory evolution competing evolutionary trajectories?
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Interactions between plasmids and other mobile genetic elements affect their transmission and persistence
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Plasmids affect microindel mutations in Acinetobacter baylyi ADP1
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Decoding the enigma: unveiling the molecular transmission of avian-associated tet(X4)-positive E. coli in Sichuan Province, China
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Transfer dynamics of antimicrobial resistance among gram-negative bacteria
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Rates of Lateral Gene Transfer in Prokaryotes: High but Why?
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Evolution of Plasmid-Mediated Antibiotic Resistance in the Clinical Context
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The Role of Integrative and Conjugative Elements in Antibiotic Resistance Evolution
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Ecological and evolutionary solutions to the plasmid paradox
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Plasmid–bacteria associations in the clinical context
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Quantifying the forces that maintain prophages in bacterial genomes
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Horizontal transfer of the multidrug resistance plasmid RP4 inhibits ammonia nitrogen removal dominated by ammonia-oxidizing bacteria
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Multidrug-resistant plasmid RP4 increases NO and N2O yields via the electron transport system in Nitrosomonas europaea ammonia oxidation
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Size-dependent promotion of micro(nano)plastics on the horizontal gene transfer of antibiotic resistance genes in constructed wetlands
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PEtN-Modified O-Antigen Enhances Shigella Pathogenesis by Promoting Epithelial Cell Invasion and Inhibiting Complement Binding
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Silica Nanoparticles Block Natural Genetic Transformation in Acinetobacter baylyi ADP1
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Bacterial evolution: Resistance is a numbers game
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Integrative analysis of fitness and metabolic effects of plasmids in Pseudomonas aeruginosa PAO1
inferred← citeshttps://doi.org/10.1038/s41396-020-00860-3openalex-snapshot
CRISPR-Cas systems restrict horizontal gene transfer in Pseudomonas aeruginosa
inferred← citeshttps://doi.org/10.1038/s41396-020-0696-1openalex-snapshot
Genome and sequence determinants governing the expression of horizontally acquired DNA in bacteria
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Regulatory fine-tuning of mcr-1 increases bacterial fitness and stabilises antibiotic resistance in agricultural settings
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Persistence and reversal of plasmid-mediated antibiotic resistance
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Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance
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Evolution of satellite plasmids can prolong the maintenance of newly acquired accessory genes in bacteria
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Dominant resistance and negative epistasis can limit the co-selection of de novo resistance mutations and antibiotic resistance genes
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Variability of plasmid fitness effects contributes to plasmid persistence in bacterial communities
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An antiplasmid system drives antibiotic resistance gene integration in carbapenemase-producing Escherichia coli lineages
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Single-cell RNA sequencing reveals plasmid constrains bacterial population heterogeneity and identifies a non-conjugating subpopulation
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A plasmid-chromosome crosstalk in multidrug resistant enterobacteria
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Adaptive modulation of antibiotic resistance through intragenomic coevolution
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Compensatory mutations improve general permissiveness to antibiotic resistance plasmids
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Plasmid evolution in the clinic
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Epistasis and co-adaptation in bacterial genome evolution
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Interactions and evolutionary relationships among bacterial mobile genetic elements
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Emerging patterns of plasmid-host coevolution that stabilize antibiotic resistance
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Pathogen species and capsule expression shape opportunistic transfer and the recipient response during plasmid RP4 conjugation
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Plasmid copy number as a modulator in bacterial pathogenesis and antibiotic resistance
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Fitness costs associated with the acquisition of antibiotic resistance
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Source–sink plasmid transfer dynamics maintain gene mobility in soil bacterial communities
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Host-specific plasmid evolution explains the variable spread of clinical antibiotic-resistance plasmids
inferred← citeshttps://doi.org/10.1073/pnas.2304474120openalex-snapshot
Rapid evolution helps bacteria to pick up a plasmid
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The behavior of mobile genetic elements (MGEs) in different environments
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Rapid compensatory evolution promotes the survival of conjugative plasmids
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A fine-scale map of genome-wide recombination in divergent Escherichia coli population
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SASpector: analysis of missing genomic regions in draft genomes of prokaryotes
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Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning
inferred← citeshttps://doi.org/10.1093/evlett/qraf024openalex-snapshot
Horizontal gene transfer, segregation loss, and the speed of microbial adaptation
inferred← citeshttps://doi.org/10.1093/femsec/fiad027openalex-snapshot
Compensatory mutations reducing the fitness cost of plasmid carriage occur in plant rhizosphere communities
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Transcriptional regulation of organohalide pollutant utilisation in bacteria
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Effect of multiple, compatible plasmids on the fitness of the bacterial host by inducing transcriptional changes
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Sequencing of plasmids pAMBL1 and pAMBL2 fromPseudomonas aeruginosareveals ablaVIM-1amplification causing high-level carbapenem resistance
inferred← citeshttps://doi.org/10.1093/molbev/msab091openalex-snapshot
Piggybacking on Niche Adaptation Improves the Maintenance of Multidrug-Resistance Plasmids
inferred← citeshttps://doi.org/10.1093/molbev/msaf062openalex-snapshot
Evolution of a Plasmid Regulatory Circuit Ameliorates Plasmid Fitness Cost
inferred← citeshttps://doi.org/10.1093/molbev/msv339openalex-snapshot
Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance
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Survival and Evolution of a Large Multidrug Resistance Plasmid in New Clinical Bacterial Hosts
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A ProQ/FinO family protein involved in plasmid copy number control favours fitness of bacteria carrying mcr-1 -bearing IncI2 plasmids
inferred← citeshttps://doi.org/10.1093/nar/gkac914openalex-snapshot
Molecular basis for lethal cross-talk between two unrelated bacterial transcription factors - the regulatory protein of a restriction-modification system and the repressor of a defective prophage
inferred← citeshttps://doi.org/10.1093/nar/gkae243openalex-snapshot
RecA-dependent or independent recombination of plasmid DNA generates a conflict with the host EcoKI immunity by launching restriction alleviation
inferred← citeshttps://doi.org/10.1093/nar/gkz665openalex-snapshot
Transcriptome analyses of cells carrying the Type II Csp231I restriction–modification system reveal cross-talk between two unrelated transcription factors: C protein and the Rac prophage repressor
inferred← citeshttps://doi.org/10.1098/rspb.2019.1110openalex-snapshot
Bacteria from natural populations transfer plasmids mostly towards their kin
inferred← citeshttps://doi.org/10.1098/rspb.2021.2027openalex-snapshot
Chicken gut microbiome members limit the spread of an antimicrobial resistance plasmid in Escherichia coli
inferred← citeshttps://doi.org/10.1098/rspb.2022.0581openalex-snapshot
A tale of two plasmids: contributions of plasmid associated phenotypes to epidemiological success among Shigella
inferred← citeshttps://doi.org/10.1098/rstb.2016.0424openalex-snapshot
Sampling the mobile gene pool: innovation via horizontal gene transfer in bacteria
inferred← citeshttps://doi.org/10.1098/rstb.2020.0466openalex-snapshot
Diversification of plasmids in a genus of pathogenic and nitrogen-fixing bacteria
inferred← citeshttps://doi.org/10.1098/rstb.2020.0473openalex-snapshot
Harmful behaviour through plasmid transfer: a successful evolutionary strategy of bacteria harbouring conjugative plasmids
inferred← citeshttps://doi.org/10.1099/jmm.0.001791openalex-snapshot
Genomic and metabolic versatility of Pseudomonas aeruginosa contributes to its inter-kingdom transmission and survival
inferred← citeshttps://doi.org/10.1099/mgen.0.000985openalex-snapshot
The Gonococcal Genetic Island defines distinct sub-populations of Neisseria gonorrhoeae
inferred← citeshttps://doi.org/10.1099/mic.0.000862openalex-snapshot
Extremely fast amelioration of plasmid fitness costs by multiple functionally diverse pathways
inferred← citeshttps://doi.org/10.1099/mic.0.001652openalex-snapshot
Hurdles to horizontal gene transfer: species-specific effects of synonymous variation and plasmid copy number determine antibiotic resistance phenotype
inferred← citeshttps://doi.org/10.1101/122713openalex-snapshot
Gene-centric intra- and inter-clade recombination in a context of Esche-richia coli subpopulations
inferred← citeshttps://doi.org/10.1101/187070openalex-snapshot
Compensatory evolution facilitates the acquisition of multiple plasmids in bacteria
inferred← citeshttps://doi.org/10.1101/2020.08.01.230672openalex-snapshot
The distribution of plasmid fitness effects explains plasmid persistence in bacterial communities
inferred← citeshttps://doi.org/10.1101/2020.10.23.351718openalex-snapshot
Limited and strain-specific transcriptional and growth responses to acquisition of a multidrug resistance plasmid in genetically diverse Escherichia coli lineages
inferred← citeshttps://doi.org/10.1101/2021.04.10.439128openalex-snapshot
Plasmid fitness costs are caused by specific genetic conflicts
inferred← citeshttps://doi.org/10.1101/2021.11.30.470536openalex-snapshot
A bistable orthogonal prokaryotic differentiation system underlying development of conjugative transfer competence
inferred← citeshttps://doi.org/10.1101/2022.09.07.506885openalex-snapshot
Enterococcal linear plasmids adapt to Enterococcus faecium and spread within multidrug-resistant clades
inferred← citeshttps://doi.org/10.1101/2022.09.29.510058openalex-snapshot
The paradoxical relationship between CRISPR-Cas and phage susceptibility in Pseudomonas aeruginosa
inferred← citeshttps://doi.org/10.1101/2023.06.03.543547openalex-snapshot
Genetic determinants of virulence and extensive drug resistance in Pseudomonas aeruginosa PPA14 isolated from eggplant rhizosphere
inferred← citeshttps://doi.org/10.1101/2024.01.15.575717openalex-snapshot
Superiority of chromosomal compared to plasmid-encoded compensatory mutations
inferred← citeshttps://doi.org/10.1101/2024.01.18.576315openalex-snapshot
Conjugation related costs have reduced impact on in silico plasmid persistence
inferred← citeshttps://doi.org/10.1101/2024.01.28.576264openalex-snapshot
Hurdles to Horizontal Gene Transfer: Synonymous variation determines antibiotic resistance phenotype across species
inferred← citeshttps://doi.org/10.1101/2024.07.02.601687openalex-snapshot
Plasmids modulate microindel mutations in Acinetobacter baylyi ADP1
inferred← citeshttps://doi.org/10.1101/2024.08.08.607126openalex-snapshot
Plasmid-chromosome transcriptional crosstalk in multidrug resistant clinical enterobacteria
inferred← citeshttps://doi.org/10.1101/2025.01.29.635536openalex-snapshot
Metabolic remodeling of microorganisms by obligate intracellular parasites alters mutualistic community composition
inferred← citeshttps://doi.org/10.1101/2025.06.02.656972openalex-snapshot
Disentangling the fitness cost of gene expression
inferred← citeshttps://doi.org/10.1101/2025.06.12.659224openalex-snapshot
Bacterial species and surface structures shape gene transfer and the transcriptional landscape during active conjugation
inferred← citeshttps://doi.org/10.1101/2025.10.13.681552openalex-snapshot
A Machine Learning Approach Reveals CRISPR-Cas I-F as a Genomic Marker of Antibiotic Susceptibility in Uropathogenic E. coli
inferred← citeshttps://doi.org/10.1103/gkzp-r681openalex-snapshot
Fitness-Driven Scaling Laws between mRNA and Protein Levels
inferred← citeshttps://doi.org/10.1111/1462-2920.14880openalex-snapshot
Plasmid‐chromosome cross‐talks
inferred← citeshttps://doi.org/10.1111/1462-2920.70333openalex-snapshot
Ecological Context Shapes Resistance Selection Under Antibiotic Pollution
inferred← citeshttps://doi.org/10.1111/1471-0307.12980openalex-snapshot
Genome‐based analysis of Pseudomonas paracarnis RQ057 , a strain responsible for blue discoloration spoilage in processed cheese
inferred← citeshttps://doi.org/10.1111/1751-7915.14408openalex-snapshot
Microbial evolution through horizontal gene transfer by mobile genetic elements
inferred← citeshttps://doi.org/10.1111/1758-2229.70292openalex-snapshot
Conjugative Transfer of Disease‐Encoding Plasmid Variants in Serratia spp. Alter Production of Enzymes and Virulence Properties
inferred← citeshttps://doi.org/10.1111/jam.15317openalex-snapshot
Rhizospheric and endophytic Pseudomonas aeruginosa in edible vegetable plants share molecular and metabolic traits with clinical isolates
inferred← citeshttps://doi.org/10.1111/mec.14056openalex-snapshot
Plasmid and clonal interference during post horizontal gene transfer evolution
inferred← citeshttps://doi.org/10.1111/mec.14080openalex-snapshot
Conflicting selection alters the trajectory of molecular evolution in a tripartite bacteria–plasmid–phage interaction
inferred← citeshttps://doi.org/10.1111/mmi.13407openalex-snapshot
Evolved plasmid‐host interactions reduce plasmid interference cost
inferred← citeshttps://doi.org/10.1111/nyas.14223openalex-snapshot
Plasmid evolution in carbapenemase‐producing Enterobacteriaceae: a review
inferred← citeshttps://doi.org/10.1128/9781555819743.ch4openalex-snapshot
Fitness Costs of Plasmids: A Limit to Plasmid Transmission
inferred← citeshttps://doi.org/10.1128/9781555819743.ch8openalex-snapshot
Ecology and Evolution of Chromosomal Gene Transfer between Environmental Microorganisms and Pathogens
inferred← citeshttps://doi.org/10.1128/aac.01619-22openalex-snapshot
Enterococcal Linear Plasmids Adapt to Enterococcus faecium and Spread within Multidrug-Resistant Clades
inferred← citeshttps://doi.org/10.1128/aem.01247-23openalex-snapshot
Transcriptional heterogeneity of catabolic genes on the plasmid pCAR1 causes host-specific carbazole degradation
inferred← citeshttps://doi.org/10.1128/mbio.00442-23openalex-snapshot
The evolution of infectious transmission promotes the persistence of mcr-1 plasmids
inferred← citeshttps://doi.org/10.1128/mbio.00558-21openalex-snapshot
Positive Selection Inhibits Plasmid Coexistence in Bacterial Genomes
inferred← citeshttps://doi.org/10.1128/mbio.01395-16openalex-snapshot
Horizontal Transfer of the Salmonella enterica Serovar Infantis Resistance and Virulence Plasmid pESI to the Gut Microbiota of Warm-Blooded Hosts
inferred← citeshttps://doi.org/10.1128/mbio.02303-17openalex-snapshot
Clinically Relevant Plasmid-Host Interactions Indicate that Transcriptional and Not Genomic Modifications Ameliorate Fitness Costs of Klebsiella pneumoniae Carbapenemase-Carrying Plasmids
inferred← citeshttps://doi.org/10.1128/mbio.02537-22openalex-snapshot
Off-Target Integron Activity Leads to Rapid Plasmid Compensatory Evolution in Response to Antibiotic Selection Pressure
inferred← citeshttps://doi.org/10.1128/mbio.02776-23openalex-snapshot
Interaction with a phage gene underlie costs of a β-lactamase
inferred← citeshttps://doi.org/10.1128/mbio.03094-20openalex-snapshot
Fitness Cost Evolution of Natural Plasmids of Staphylococcus aureus
inferred← citeshttps://doi.org/10.1128/microbiolspec.mtbp-0006-2016openalex-snapshot
Ecology and Evolution of Chromosomal Gene Transfer between Environmental Microorganisms and Pathogens
inferred← citeshttps://doi.org/10.1128/microbiolspec.mtbp-0016-2017openalex-snapshot
Fitness Costs of Plasmids: a Limit to Plasmid Transmission
inferred← citeshttps://doi.org/10.1128/mmbr.00019-17openalex-snapshot
The Divided Bacterial Genome: Structure, Function, and Evolution
inferred← citeshttps://doi.org/10.1128/msphere.00184-22openalex-snapshot
Genomics, Transcriptomics, and Metabolomics Reveal That Minimal Modifications in the Host Are Crucial for the Compensatory Evolution of ColE1-Like Plasmids
inferred← citeshttps://doi.org/10.1128/msphere.00930-21openalex-snapshot
Plasmid-Mediated Stabilization of Prophages
inferred← citeshttps://doi.org/10.1128/msystems.00083-21openalex-snapshot
Limited and Strain-Specific Transcriptional and Growth Responses to Acquisition of a Multidrug Resistance Plasmid in Genetically Diverse Escherichia coli Lineages
inferred← citeshttps://doi.org/10.1128/msystems.00144-25openalex-snapshot
Metabolic remodeling of microorganisms by mobile genetic elements alters mutualistic community composition
inferred← citeshttps://doi.org/10.1128/msystems.00713-22openalex-snapshot
Evolutionary Responses to Acquiring a Multidrug Resistance Plasmid Are Dominated by Metabolic Functions across Diverse Escherichia coli Lineages
inferred← citeshttps://doi.org/10.1128/msystems.01197-24openalex-snapshot
Evolution and maintenance of a large multidrug-resistant plasmid in a Salmonella enterica Typhimurium host under differing antibiotic selection pressures
inferred← citeshttps://doi.org/10.1139/cjm-2017-0609openalex-snapshot
Plasmid persistence: costs, benefits, and the plasmid paradox
inferred← citeshttps://doi.org/10.1186/s12862-018-1164-7openalex-snapshot
Assessing the benefits of horizontal gene transfer by laboratory evolution and genome sequencing
inferred← citeshttps://doi.org/10.1186/s12866-020-01923-3openalex-snapshot
Metagenomics revealing molecular profiling of community structure and metabolic pathways in natural hot springs of the Sikkim Himalaya
inferred← citeshttps://doi.org/10.1186/s12929-019-0603-0openalex-snapshot
Co-introduction of plasmids harbouring the carbapenemase genes, blaNDM-1 and blaOXA-232, increases fitness and virulence of bacterial host
inferred← citeshttps://doi.org/10.12731/2658-6649-2025-17-3-1131openalex-snapshot
Causes of emergence, mechanisms, rate of development, pathways of spread, and consequences of antibiotic resistance
inferred← citeshttps://doi.org/10.1360/sst-2024-0258openalex-snapshot
Fitness costs of plasmids carrying antibiotic resistance genes
inferred← citeshttps://doi.org/10.1371/journal.pbio.3001225openalex-snapshot
Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation
inferred← citeshttps://doi.org/10.1371/journal.pbio.3002926openalex-snapshot
A chromosomal mutation is superior to a plasmid-encoded mutation for plasmid fitness cost compensation
inferred← citeshttps://doi.org/10.1371/journal.pbio.3003852openalex-snapshot
Resistance potentiators: Evolutionary catalysts of antibiotic resistance
inferred← citeshttps://doi.org/10.1371/journal.pgen.1006005openalex-snapshot
The Genomic Basis of Evolutionary Innovation in Pseudomonas aeruginosa
inferred← citeshttps://doi.org/10.1371/journal.pgen.1010286openalex-snapshot
A bistable prokaryotic differentiation system underlying development of conjugative transfer competence
inferred← citeshttps://doi.org/10.1371/journal.pone.0209706openalex-snapshot
Fitness cost of a mcr-1-carrying IncHI2 plasmid
inferred← citeshttps://doi.org/10.1534/g3.117.300405openalex-snapshot
Inter-replicon Gene Flow Contributes to Transcriptional Integration in the Sinorhizobium meliloti Multipartite Genome
inferred← citeshttps://doi.org/10.21203/rs.3.rs-9816737/v1openalex-snapshot
Eco-evolutionary dynamics of defense systems in mobile genetic elements: Cui bono?
inferred← citeshttps://doi.org/10.2147/idr.s210245openalex-snapshot
In vitro reduction of colistin susceptibility and comparative genomics reveals multiple differences between MCR-positive and MCR-negative colistin-resistant Escherichia coli
inferred← citeshttps://doi.org/10.22215/etd/2021-14588openalex-snapshot
The Effect of Genetic Background and Environment on Plasmid Fitness and Persistence
inferred← citeshttps://doi.org/10.32942/x2390nopenalex-snapshot
Conjugation Related Costs Have Reduced Impact on *in silico* Plasmid Persistence
inferred← citeshttps://doi.org/10.3389/fcimb.2017.00007openalex-snapshot
Quorum Sensing N-acyl Homoserine Lactones-SdiA Suppresses Escherichia coli-Pseudomonas aeruginosa Conjugation through Inhibiting traI Expression
inferred← citeshttps://doi.org/10.3389/fcimb.2017.00150openalex-snapshot
Anti-Restriction Protein, KlcAHS, Promotes Dissemination of Carbapenem Resistance
inferred← citeshttps://doi.org/10.3389/fmicb.2017.00246openalex-snapshot
Epistasis and the Evolution of Antimicrobial Resistance
inferred← citeshttps://doi.org/10.3389/fmicb.2017.01852openalex-snapshot
Transfer and Persistence of a Multi-Drug Resistance Plasmid in situ of the Infant Gut Microbiota in the Absence of Antibiotic Treatment
inferred← citeshttps://doi.org/10.3389/fmicb.2020.01328openalex-snapshot
A Novel Small RNA on the Pseudomonas putida KT2440 Chromosome Is Involved in the Fitness Cost Imposed by IncP-1 Plasmid RP4
inferred← citeshttps://doi.org/10.3389/fmicb.2020.02033openalex-snapshot
Plasmid Interactions Can Improve Plasmid Persistence in Bacterial Populations
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1105921openalex-snapshot
Pseudomonas aeruginosa heteroresistance to levofloxacin caused by upregulated expression of essential genes for DNA replication and repair
inferred← citeshttps://doi.org/10.3389/fmicb.2022.859854openalex-snapshot
The Dynamics of the Antimicrobial Resistance Mobilome of Salmonella enterica and Related Enteric Bacteria
inferred← citeshttps://doi.org/10.3389/fmicb.2025.1655907openalex-snapshot
In silico characterization of chromosomally integrated blaCTX-M genes among clinical Enterobacteriaceae in Africa: insights from whole-genome analysis
inferred← citeshttps://doi.org/10.3389/fmicb.2026.1903212openalex-snapshot
Long-term spatiotemporal dynamics of β-lactamase resistome in the Han River, South Korea
inferred← citeshttps://doi.org/10.3390/antibiotics10010090openalex-snapshot
Genome-Based Analyses of Fitness Effects and Compensatory Changes Associated with Acquisition of blaCMY-, blaCTX-M-, and blaOXA-48/VIM-1-Containing Plasmids in Escherichia coli
inferred← citeshttps://doi.org/10.3390/genes11020142openalex-snapshot
Horizontally Acquired Homologs of Xenogeneic Silencers: Modulators of Gene Expression Encoded by Plasmids, Phages and Genomic Islands
inferred← citeshttps://doi.org/10.3410/f.735975044.793561981openalex-snapshot
Faculty Opinions recommendation of Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance.
inferred← citeshttps://doi.org/10.5897/ajmr2015.7789openalex-snapshot
Effects of plasmid acquisition by Pseudomonas aeruginosa clinical isolates on methicillin-resistant Staphylococcus aureus biofilm formation
inferred← citeshttps://doi.org/10.64898/2026.03.06.710025openalex-snapshot
Fitness effects of antimicrobial resistance genes in changing environments
inferred← citeshttps://doi.org/10.70675/0b60a00bzfaa2z4639z9412za2a6d5794eb0openalex-snapshot
Régulation in labo et in situ de l'expression de génomes de souches bactériennes méthylotrophes dégradant le dichlorométhane
inferred← citeshttps://doi.org/10.70675/11f8483cz83f7z49b6z89daz1061f4fd4d71openalex-snapshot
Mesure de l’impact de plasmides conjugatifs codant pour des BLSE de type CTX-M au sein de l’espèce E. coli par une approche d’évolution expérimentale
inferred← citeshttps://doi.org/10.70675/df289fa2zdf19z4ee0zacaez9f23282bc3a3openalex-snapshot
Impact de plasmides conjugatifs codant des bêta-lactamases à spectre élargi (BLSE) de type CTX-M sur la valeur sélective et l'évolution de souches de Escherichia coli
inferred← citeshttps://doi.org/10.7554/elife.78834openalex-snapshot
Pre-existing chromosomal polymorphisms in pathogenic E. coli potentiate the evolution of resistance to a last-resort antibiotic
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