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Source–sink plasmid transfer dynamics maintain gene mobility in soil bacterial communities
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Mixed effects models and extensions in ecology with R
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ggplot2: Elegant Graphics for Data Analysis
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Host Mixing and Disease Emergence
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Parallel Compensatory Evolution Stabilizes Plasmids across the Parasitism-Mutualism Continuum
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Development of PCR assay to identify Pseudomonas fluorescens and its biotype
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Mercury pollution in Asia: A review of the contaminated sites
inferredcites →https://doi.org/10.1016/j.tim.2012.04.003openalex-snapshot
Plasmid-mediated horizontal gene transfer is a coevolutionary process
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Generalized linear mixed models: a practical guide for ecology and evolution
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Exploring the costs of horizontal gene transfer
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Assembling evidence for identifying reservoirs of infection
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Gene transfer in soil systems using microcosms
inferredcites →https://doi.org/10.1038/ismej.2008.53openalex-snapshot
Spatial structure and nutrients promote invasion of IncP-1 plasmids in bacterial populations
inferredcites →https://doi.org/10.1038/ismej.2013.13openalex-snapshot
Community-wide plasmid gene mobilization and selection
inferredcites →https://doi.org/10.1038/ismej.2014.191openalex-snapshot
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
inferredcites →https://doi.org/10.1038/ncomms6208openalex-snapshot
Positive selection and compensatory adaptation interact to stabilize non-transmissible plasmids
inferredcites →https://doi.org/10.1038/ncomms7845openalex-snapshot
Interactions between horizontally acquired genes create a fitness cost in Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1038/nrmicro1235openalex-snapshot
Mobile genetic elements: the agents of open source evolution
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Bacterial biofilms: from the Natural environment to infectious diseases
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Global patterns in bacterial diversity
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Defined spatial structure stabilizes a synthetic multispecies bacterial community
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Network analyses structure genetic diversity in independent genetic worlds
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TRANSITORY DEREPRESSION AND THE MAINTENANCE OF CONJUGATIVE PLASMIDS
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Natural Selection, Infectious Transfer and the Existence Conditions for Bacterial Plasmids
inferredcites →https://doi.org/10.1093/genetics/162.4.1525openalex-snapshot
Plasmids Spread Very Fast in Heterogeneous Bacterial Communities
inferredcites →https://doi.org/10.1093/genetics/165.4.1641openalex-snapshot
Amelioration of the Cost of Conjugative Plasmid Carriage in Eschericha coli K12
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THE POPULATION BIOLOGY OF BACTERIAL PLASMIDS: A PRIORI CONDITIONS FOR THE EXISTENCE OF CONJUGATIONALLY TRANSMITTED FACTORS
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Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance
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Dynamics of plasmid transfer on surfaces
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Host range diversification within the IncP-1 plasmid group
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Stability of a promiscuous plasmid in different hosts: no guarantee for a long-term relationship
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Environmentally co‐occurring mercury resistance plasmids are genetically and phenotypically diverse and confer variable context‐dependent fitness effects
inferredcites →https://doi.org/10.1111/evo.12537openalex-snapshot
Antibiotic resistance correlates with transmission in plasmid evolution
inferredcites →https://doi.org/10.1111/j.1461-0248.2009.01374.xopenalex-snapshot
Dispersal and natural enemies interact to drive spatial synchrony and decrease stability in patchy populations
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ggplot2: Elegant Graphics for Data Analysis
inferredcites →https://doi.org/10.1111/j.1574-6968.2004.tb09655.xopenalex-snapshot
Development of PCR assay to identify Pseudomonas fluorescens and its biotype
inferredcites →https://doi.org/10.1111/j.1574-6968.2006.00536.xopenalex-snapshot
Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations
inferredcites →https://doi.org/10.1111/j.1574-6976.2012.00337.xopenalex-snapshot
Plasmids foster diversification and adaptation of bacterial populations in soil
inferredcites →https://doi.org/10.1126/science.1198767openalex-snapshot
Bacteria-Phage Antagonistic Coevolution in Soil
inferredcites →https://doi.org/10.1128/aem.05439-11openalex-snapshot
Broad-Host-Range Plasmids from Agricultural Soils Have IncP-1 Backbones with Diverse Accessory Genes
inferredcites →https://doi.org/10.1128/aem.66.12.5448-5456.2000openalex-snapshot
Biogeography and Degree of Endemicity of Fluorescent Pseudomonas Strains in Soil
inferredcites →https://doi.org/10.1128/iai.00127-11openalex-snapshot
Prevalence and Significance of Plasmid Maintenance Functions in the Virulence Plasmids of Pathogenic Bacteria
inferredcites →https://doi.org/10.1128/jb.188.1.37-44.2006openalex-snapshot
Characterization of thePseudomonas putidaMobile Genetic Element ISPpu10: an Occupant of Repetitive Extragenic Palindromic Sequences
inferredcites →https://doi.org/10.1128/mbio.00586-15openalex-snapshot
Bacteriophages Limit the Existence Conditions for Conjugative Plasmids
inferredcites →https://doi.org/10.1186/1471-2148-11-130openalex-snapshot
The evolution of plasmid-carried antibiotic resistance
inferredcites →https://doi.org/10.1186/s12862-016-0642-zopenalex-snapshot
Multi-host environments select for host-generalist conjugative plasmids
inferredcites →https://doi.org/10.1534/genetics.107.084475openalex-snapshot
Adaptive Plasmid Evolution Results in Host-Range Expansion of a Broad-Host-Range Plasmid
inferredcites →https://doi.org/10.18637/jss.v067.i01openalex-snapshot
Fitting Linear Mixed-Effects Models Using lme4
inferredcites →https://doi.org/10.3389/fmicb.2014.00637openalex-snapshot
Natural microbial communities supporting the transfer of the IncP-1β plasmid pB10 exhibit a higher initial content of plasmids from the same incompatibility group
inferredcites →https://doi.org/10.7717/peerj.1114openalex-snapshot
A comparison of observation-level random effect and Beta-Binomial models for modelling overdispersion in Binomial data in ecology & evolution
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Horizontal and vertical gene transfer shape the plasmid host range in surface-associated microbial systems
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Ecological risk assessment of coal mine area based on “source-sink” landscape theory – A case study of Pingshuo mining area
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Horizontal gene transfer can help maintain the equilibrium of microbial communities
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An evolutionary perspective on plasmid lifestyle modes
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Ecological dynamics of plasmid transfer and persistence in microbial communities
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Identification of plasmid encoded osmoregulatory genes from halophilic bacteria isolated from the rhizosphere of halophytes
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The role of hosts, plasmids and environment in determining plasmid transfer rates: A meta-analysis
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Formation of new PHE plasmids in pseudomonads in a phenol-polluted environment
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Timing of antibiotic administration determines the spread of plasmid-encoded antibiotic resistance during microbial range expansion
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Host- plasmid network structure in wastewater is linked to antimicrobial resistance genes
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β-lactamase expression induces collateral sensitivity in Escherichia coli
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Horizontal gene transfer enables programmable gene stability in synthetic microbiota
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Ecology determines how low antibiotic concentration impacts community composition and horizontal transfer of resistance genes
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Environmental microbiome diversity and stability is a barrier to antimicrobial resistance gene accumulation
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Selective shifts in mobile antibiotic resistance genes under carbamazepine exposure in wastewater microbiomes
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Eco-evolutionary responses to plasmid-dependent phage constrain the spread of multidrug-resistance plasmids
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The extended mobility of plasmids
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DeepMicroClass sorts metagenomic contigs into prokaryotes, eukaryotes and viruses
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Plasmid stability is enhanced by higher-frequency pulses of positive selection
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Migration promotes plasmid stability under spatially heterogeneous positive selection
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Bacteria from natural populations transfer plasmids mostly towards their kin
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Gene sharing among plasmids and chromosomes reveals barriers for antibiotic resistance gene transfer
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Harmful behaviour through plasmid transfer: a successful evolutionary strategy of bacteria harbouring conjugative plasmids
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Selfish, promiscuous and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations
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Plasmid genomic epidemiology of bla NDM carbapenemase-producing Enterobacterales in Canada from 2010 to 2023
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The pQBR mercury resistance plasmids: a model set of sympatric environmental mobile genetic elements
inferred← citeshttps://doi.org/10.1099/mic.0.000862openalex-snapshot
Extremely fast amelioration of plasmid fitness costs by multiple functionally diverse pathways
inferred← citeshttps://doi.org/10.1099/mic.0.001086openalex-snapshot
The dilution effect limits plasmid horizontal transmission in multispecies bacterial communities
inferred← citeshttps://doi.org/10.1099/mic.0.001214openalex-snapshot
Evolution of horizontal transmission in antimicrobial resistance plasmids
inferred← citeshttps://doi.org/10.1099/mic.0.001362openalex-snapshot
A mathematician’s guide to plasmids: an introduction to plasmid biology for modellers
inferred← citeshttps://doi.org/10.1099/mic.0.001622openalex-snapshot
Seaweed exposure modulates Escherichia coli plasmid conjugation rate
inferred← citeshttps://doi.org/10.1099/mic.0.001737openalex-snapshot
Using auxotrophic donor strains to explore pQBR57 plasmid host range among environmental soil bacterial isolates
inferred← citeshttps://doi.org/10.1101/187070openalex-snapshot
Compensatory evolution facilitates the acquisition of multiple plasmids in bacteria
inferred← citeshttps://doi.org/10.1101/2020.02.13.947077openalex-snapshot
Slightly beneficial genes are retained by evolving Horizontal Gene Transfer despite selfish elements
inferred← citeshttps://doi.org/10.1101/2020.03.03.975128openalex-snapshot
The Persistence Potential of Mobile Genetic Elements
inferred← citeshttps://doi.org/10.1101/2021.04.10.439128openalex-snapshot
Plasmid fitness costs are caused by specific genetic conflicts
inferred← citeshttps://doi.org/10.1101/2021.08.02.454727openalex-snapshot
Multi-plasmid clash in a bacterial community: plasmid viability depends on the ecological setting of hosts
inferred← citeshttps://doi.org/10.1101/2022.02.25.481914openalex-snapshot
Horizontal gene transfer increases microbiome stability
inferred← citeshttps://doi.org/10.1101/2022.03.15.484385openalex-snapshot
Segregational instability of multicopy plasmids: a population genetics approach
inferred← citeshttps://doi.org/10.1101/2022.11.04.515217openalex-snapshot
Regulatory fine-tuning and horizontal gene transfer stabilize mobile colistin resistance
inferred← citeshttps://doi.org/10.1101/2023.02.01.526699openalex-snapshot
Physical contacts between sparse biofilms promote plasmid transfer and generate functional novelty
inferred← citeshttps://doi.org/10.1101/2023.03.30.534382openalex-snapshot
Microbiome diversity: A barrier to the environmental spread of antimicrobial resistance?
inferred← citeshttps://doi.org/10.1101/2023.10.15.562376openalex-snapshot
Long-term dynamics of the “ Serratia marcescens complex” in the hospital-built environment
inferred← citeshttps://doi.org/10.1101/2023.11.22.568265openalex-snapshot
β-lactamase expression induces collateral sensitivity in Escherichia coli
inferred← citeshttps://doi.org/10.1101/2025.01.30.635773openalex-snapshot
Plasmids Across Datasets: Resistance, Virulence, Mobility, and Host Taxonomy
inferred← citeshttps://doi.org/10.1101/2025.05.31.657151openalex-snapshot
Species interactions determine plasmid persistence in a 3-member bacterial community
inferred← citeshttps://doi.org/10.1101/2025.09.09.675050openalex-snapshot
Selective spread of mobile antibiotic resistance genes in wastewater microbiomes driven by the non-antibiotic pharmaceutical carbamazepine
inferred← citeshttps://doi.org/10.1101/2025.10.08.681082openalex-snapshot
Trade-offs between phage resistance and conjugative ability shape the ecological and evolutionary response of a multidrug resistance plasmid to plasmid-dependent phage
inferred← citeshttps://doi.org/10.1101/2025.10.31.685803openalex-snapshot
Dynamical memory underlies prolonged plasmid persistence after transient antibiotic treatment
inferred← citeshttps://doi.org/10.1111/1462-2920.13976openalex-snapshot
Ecological and evolutionary dynamics of a model facultative pathogen: Agrobacterium and crown gall disease of plants
inferred← citeshttps://doi.org/10.1111/1462-2920.14645openalex-snapshot
Conjugative transfer between Rhizobium etli endosymbionts inside the root nodule
inferred← citeshttps://doi.org/10.1111/1758-2229.12894openalex-snapshot
Darwinian individuality of extrachromosomal genetic elements calls for population genetics tinkering
inferred← citeshttps://doi.org/10.1128/9781555819743.ch4openalex-snapshot
Fitness Costs of Plasmids: A Limit to Plasmid Transmission
inferred← citeshttps://doi.org/10.1128/aac.00554-24openalex-snapshot
IncC plasmid genome rearrangements influence the vertical and horizontal transmission tradeoff in Escherichia coli
inferred← citeshttps://doi.org/10.1128/cmr.00050-19openalex-snapshot
Evolutionary Pathways and Trajectories in Antibiotic Resistance
inferred← citeshttps://doi.org/10.1128/mbio.00442-23openalex-snapshot
The evolution of infectious transmission promotes the persistence of mcr-1 plasmids
inferred← citeshttps://doi.org/10.1128/mbio.00558-21openalex-snapshot
Positive Selection Inhibits Plasmid Coexistence in Bacterial Genomes
inferred← citeshttps://doi.org/10.1128/mbio.03054-23openalex-snapshot
The ICU environment contributes to the endemicity of the “ Serratia marcescens complex” in the hospital setting
inferred← citeshttps://doi.org/10.1128/mbio.03771-21openalex-snapshot
Genomic Surveillance of Vancomycin-Resistant Enterococcus faecium Reveals Spread of a Linear Plasmid Conferring a Nutrient Utilization Advantage
inferred← citeshttps://doi.org/10.1128/microbiolspec.mtbp-0016-2017openalex-snapshot
Fitness Costs of Plasmids: a Limit to Plasmid Transmission
inferred← citeshttps://doi.org/10.1128/msystems.00186-18openalex-snapshot
Mobile Compensatory Mutations Promote Plasmid Survival
inferred← citeshttps://doi.org/10.1128/msystems.00531-26openalex-snapshot
Spatial constraints determine the spread of plasmid-encoded antibiotic resistance between bacterial colonies
inferred← citeshttps://doi.org/10.1128/spectrum.00133-22openalex-snapshot
Plasmid Viability Depends on the Ecological Setting of Hosts within a Multiplasmid Community
inferred← citeshttps://doi.org/10.1139/cjm-2025-0226openalex-snapshot
Antimicrobial resistance gene diversity, prevalence, and mobility within four landfills
inferred← citeshttps://doi.org/10.1146/annurev-micro-041522-102707openalex-snapshot
From Petri Dishes to Patients to Populations: Scales and Evolutionary Mechanisms Driving Antibiotic Resistance
inferred← citeshttps://doi.org/10.1186/s12870-025-06298-zopenalex-snapshot
Loss of phytochromobilin synthase activity leads to larger seeds with higher protein content in soybean
inferred← citeshttps://doi.org/10.1186/s13073-022-01040-yopenalex-snapshot
Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance
inferred← citeshttps://doi.org/10.1186/s40168-025-02238-zopenalex-snapshot
ProFiT-SPEci-FISH: a novel approach for linking plasmids to hosts in complex microbial communities at the single-cell level
inferred← citeshttps://doi.org/10.1264/jsme2.me22008openalex-snapshot
Symbiosis Contribution of Non-nodulating Bradyrhizobium cosmicum S23321 after Transferal of the Symbiotic Plasmid pDOA9
inferred← citeshttps://doi.org/10.1371/journal.pbio.3001225openalex-snapshot
Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation
inferred← citeshttps://doi.org/10.1371/journal.pbio.3001847openalex-snapshot
Horizontal gene transfer and ecological interactions jointly control microbiome stability
inferred← citeshttps://doi.org/10.1371/journal.pbio.3002926openalex-snapshot
A chromosomal mutation is superior to a plasmid-encoded mutation for plasmid fitness cost compensation
inferred← citeshttps://doi.org/10.1371/journal.pbio.3003489openalex-snapshot
Bacterial immune systems as causes and consequences of microbiome structure
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1007211openalex-snapshot
Mathematical model predicts anti-adhesion–antibiotic–debridement combination therapies can clear an antibiotic resistant infection
inferred← citeshttps://doi.org/10.1371/journal.pone.0359090openalex-snapshot
Codon-aware multi-scale feature fusion for metagenomic sequence classification
inferred← citeshttps://doi.org/10.15421/0225096openalex-snapshot
Plasmid profiles of antibiotic-resistant opportunistic strains of the Enterobacteriaceae family in the microbiota of men with urogenital tract inflammatory pathology
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1016976/v1openalex-snapshot
DeepMicrobeFinder Sorts Metagenomes into Prokaryotes, Eukaryotes and Viruses, with Marine Applications
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2674610/v1openalex-snapshot
Timing of antibiotic administration determines the spread of plasmid-encoded antibiotic resistance during microbial range expansion
inferred← citeshttps://doi.org/10.22215/etd/2021-14588openalex-snapshot
The Effect of Genetic Background and Environment on Plasmid Fitness and Persistence
inferred← citeshttps://doi.org/10.22541/au.166522876.68615698/v1openalex-snapshot
Plasmid stability in fluctuating environments: population genetics of multi-copy plasmids
inferred← citeshttps://doi.org/10.32942/x2ws3ropenalex-snapshot
Conceptualizing microbe-plasmid communities as complex adaptive systems
inferred← citeshttps://doi.org/10.3389/fmicb.2017.01966openalex-snapshot
Plasmid-Mediated Bioaugmentation for the Bioremediation of Contaminated Soils
inferred← citeshttps://doi.org/10.3389/fmicb.2020.01846openalex-snapshot
The Impact of Mercury Selection and Conjugative Genetic Elements on Community Structure and Resistance Gene Transfer
inferred← citeshttps://doi.org/10.3389/fmicb.2020.02033openalex-snapshot
Plasmid Interactions Can Improve Plasmid Persistence in Bacterial Populations
inferred← citeshttps://doi.org/10.3389/fmicb.2020.02062openalex-snapshot
Intracellular Competitions Reveal Determinants of Plasmid Evolutionary Success
inferred← citeshttps://doi.org/10.3389/fmicb.2021.655903openalex-snapshot
Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1371388openalex-snapshot
Current examining methods and mathematical models of horizontal transfer of antibiotic resistance genes in the environment
inferred← citeshttps://doi.org/10.3390/ijms24031967openalex-snapshot
The Impact of Non-Pathogenic Bacteria on the Spread of Virulence and Resistance Genes
inferred← citeshttps://doi.org/10.3390/microorganisms11051238openalex-snapshot
Plasmids Increase the Competitive Ability of Plasmid-Bearing Cells Even When Transconjugants Are Poor Donors, as Shown by Computer Simulations
inferred← citeshttps://doi.org/10.3410/f.735975044.793561981openalex-snapshot
Faculty Opinions recommendation of Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance.
inferred← citeshttps://doi.org/10.3934/mbe.2022257openalex-snapshot
The gossip paradox: Why do bacteria share genes?
inferred← citeshttps://doi.org/10.46471/gigabyte.75openalex-snapshot
Nanopore-based enrichment of antimicrobial resistance genes – a case-based study
inferred← citeshttps://doi.org/10.46814/lajdv4n1-020openalex-snapshot
Tolerance and reduction of Cr(VI) by Bacillus amyloliquefaciens, B. thuringiensis and Paenibacillus sp., isolated from Pasto River
inferred← citeshttps://doi.org/10.6084/m9.figshare.19518258openalex-snapshot
Additional file 2 of Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.19518261openalex-snapshot
Additional file 3 of Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance
inferred← citeshttps://doi.org/10.64898/2026.01.08.698332openalex-snapshot
Plasmid transfer and loss probabilities interactively determine antibiotic resistance spread in surface-associated bacterial biomass
inferred← citeshttps://doi.org/10.70675/9ae1dd65z81c2z4558z93e5zf2b97f4efecfopenalex-snapshot
Résistance aux antimicrobiens et routes de transmission : De l'environnement hospitalier vers le milieu naturel.
inferred← citeshttps://doi.org/10.70675/c305c7b8z2178z4a27z839fzc54f45a70648openalex-snapshot
Deciphering in vivo efficacy of virulent phages in the mammalian gut
inferred← citeshttps://doi.org/10.70675/df289fa2zdf19z4ee0zacaez9f23282bc3a3openalex-snapshot
Impact de plasmides conjugatifs codant des bêta-lactamases à spectre élargi (BLSE) de type CTX-M sur la valeur sélective et l'évolution de souches de Escherichia coli
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