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Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Sex Chromosomes and Sex-linked Genes.
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1101/gr.192278.115openalex-snapshot
The landscape of genomic imprinting across diverse adult human tissues
inferred← citeshttps://doi.org/10.1101/gr.195743.115openalex-snapshot
Gene regulation and speciation in house mice
inferred← citeshttps://doi.org/10.1101/gr.238543.118openalex-snapshot
Quantification of somatic mutation flow across individual cell division events by lineage sequencing
inferred← citeshttps://doi.org/10.1109/tst.2015.7297750openalex-snapshot
Analysis of allele specific expression - a survey
inferred← citeshttps://doi.org/10.1111/biom.13026openalex-snapshot
A Statistical Method for Joint Estimation of Cis-eQTLs and Parent-of-Origin Effects Under Family Trio Design
inferred← citeshttps://doi.org/10.1111/brv.12786openalex-snapshot
The integrative biology of genetic dominance
inferred← citeshttps://doi.org/10.1111/cpr.70103openalex-snapshot
Evolutionary Analysis of Transcriptional Regulation Mediated by Cdx2 in Rodents
inferred← citeshttps://doi.org/10.1111/evo.13085openalex-snapshot
Genomic imprinting, disrupted placental expression, and speciation
inferred← citeshttps://doi.org/10.1111/gbb.12438openalex-snapshot
Perinatal nutrition interacts with genetic background to alter behavior in a parent‐of‐origin‐dependent manner in adult Collaborative Cross mice
inferred← citeshttps://doi.org/10.1111/nph.18903openalex-snapshot
A large‐scale behavior of allelic dropout and imbalance caused by DNA methylation changes in an early‐ripening bud sport of peach
inferred← citeshttps://doi.org/10.1111/tpj.13706openalex-snapshot
Extensive genome heterogeneity leads to preferential allele expression and copy number‐dependent expression in cultivated potato
inferred← citeshttps://doi.org/10.1126/sciadv.adq5360openalex-snapshot
The X chromosome’s influences on the human brain
inferred← citeshttps://doi.org/10.1126/science.abn8455openalex-snapshot
Analysis of genetic dominance in the UK Biobank
inferred← citeshttps://doi.org/10.1126/science.abo3191openalex-snapshot
Sex- and age-dependent genetics of longevity in a heterogeneous mouse population
inferred← citeshttps://doi.org/10.1126/scitranslmed.aab1287openalex-snapshot
Absence of sperm RNA elements correlates with idiopathic male infertility
inferred← citeshttps://doi.org/10.1146/annurev-biodatasci-021621-122219openalex-snapshot
Perspectives on Allele-Specific Expression
inferred← citeshttps://doi.org/10.1146/annurev-neuro-061010-113708openalex-snapshot
New Perspectives on Genomic Imprinting, an Essential and Multifaceted Mode of Epigenetic Control in the Developing and Adult Brain
inferred← citeshttps://doi.org/10.1161/circgenetics.116.001498openalex-snapshot
Functional Validation of a Common Nonsynonymous Coding Variant in ZC3HC1 Associated With Protection From Coronary Artery Disease
inferred← citeshttps://doi.org/10.1177/00236772231192030openalex-snapshot
Bibliometric analysis on cannibalism/infanticide and maternal aggression towards pups in laboratory rodents
inferred← citeshttps://doi.org/10.1186/s12284-016-0123-4openalex-snapshot
Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs
inferred← citeshttps://doi.org/10.1186/s12859-020-3484-zopenalex-snapshot
Short paired-end reads trump long single-end reads for expression analysis
inferred← citeshttps://doi.org/10.1186/s12863-018-0696-6openalex-snapshot
Investigation of allele-specific expression of genes involved in adipogenesis and lipid metabolism suggests complex regulatory mechanisms of PPARGC1A expression in porcine fat tissues
inferred← citeshttps://doi.org/10.1186/s12864-015-2164-2openalex-snapshot
The direction of cross affects obesity after puberty in male but not female offspring
inferred← citeshttps://doi.org/10.1186/s12864-015-2174-0openalex-snapshot
Extensive variation between tissues in allele specific expression in an outbred mammal
inferred← citeshttps://doi.org/10.1186/s12864-016-2922-9openalex-snapshot
The abundance of cis-acting loci leading to differential allele expression in F1 mice and their relationship to loci harboring genes affecting complex traits
inferred← citeshttps://doi.org/10.1186/s12864-018-4800-0openalex-snapshot
Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits
inferred← citeshttps://doi.org/10.1186/s12864-019-6342-5openalex-snapshot
Evolution of cis- and trans-regulatory divergence in the chicken genome between two contrasting breeds analyzed using three tissue types at one-day-old
inferred← citeshttps://doi.org/10.1186/s12915-022-01301-7openalex-snapshot
Comparative 3D genome architecture in vertebrates
inferred← citeshttps://doi.org/10.1186/s12993-015-0078-4openalex-snapshot
Expanding the toolbox of ADHD genetics. How can we make sense of parent of origin effects in ADHD and related behavioral phenotypes?
inferred← citeshttps://doi.org/10.1186/s13059-023-03003-xopenalex-snapshot
SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty
inferred← citeshttps://doi.org/10.1186/s13072-021-00418-3openalex-snapshot
Single-nuclei chromatin profiling of ventral midbrain reveals cell identity transcription factors and cell-type-specific gene regulatory variation
inferred← citeshttps://doi.org/10.1186/s13104-021-05851-xopenalex-snapshot
Power calculator for detecting allelic imbalance using hierarchical Bayesian model
inferred← citeshttps://doi.org/10.1186/s13293-017-0150-xopenalex-snapshot
Sex chromosomes drive gene expression and regulatory dimorphisms in mouse embryonic stem cells
inferred← citeshttps://doi.org/10.1186/s13326-017-0146-9openalex-snapshot
Towards precision medicine: discovering novel gynecological cancer biomarkers and pathways using linked data
inferred← citeshttps://doi.org/10.1242/jcs.228973openalex-snapshot
Monoallelic, antisense and total RNA transcription in an in vitro neural differentiation system based on F1 hybrid mice
inferred← citeshttps://doi.org/10.1261/rna.058347.116openalex-snapshot
Erasure and reestablishment of random allelic expression imbalance after epigenetic reprogramming
inferred← citeshttps://doi.org/10.12688/f1000research.11491.1openalex-snapshot
The emerging landscape of in vitro and in vivo epigenetic allelic effects
inferred← citeshttps://doi.org/10.12688/f1000research.20916.1openalex-snapshot
Fast effect size shrinkage software for beta-binomial models of allelic imbalance
inferred← citeshttps://doi.org/10.12688/f1000research.20916.2openalex-snapshot
Fast effect size shrinkage software for beta-binomial models of allelic imbalance
inferred← citeshttps://doi.org/10.12688/f1000research.9037.1openalex-snapshot
SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes
inferred← citeshttps://doi.org/10.12688/f1000research.9037.2openalex-snapshot
SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes
inferred← citeshttps://doi.org/10.1289/ehp788openalex-snapshot
Characterization of Variability in Toxicokinetics and Toxicodynamics of Tetrachloroethylene Using the Collaborative Cross Mouse Population
inferred← citeshttps://doi.org/10.13025/20953openalex-snapshot
Linked functional annotation for differentially expressed gene (DEG) demonstrated using Illumina Body Map 2.0
inferred← citeshttps://doi.org/10.1371/journal.pgen.1004850openalex-snapshot
A Multi-Megabase Copy Number Gain Causes Maternal Transmission Ratio Distortion on Mouse Chromosome 2
inferred← citeshttps://doi.org/10.1371/journal.pgen.1005650openalex-snapshot
A Flexible, Efficient Binomial Mixed Model for Identifying Differential DNA Methylation in Bisulfite Sequencing Data
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008537openalex-snapshot
Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008916openalex-snapshot
Trappc9 deficiency causes parent-of-origin dependent microcephaly and obesity
inferred← citeshttps://doi.org/10.1371/journal.pmed.1003196openalex-snapshot
The role of polygenic susceptibility to obesity among carriers of pathogenic mutations in MC4R in the UK Biobank population
inferred← citeshttps://doi.org/10.1371/journal.pone.0153674openalex-snapshot
Respiratory Mucosal Proteome Quantification in Human Influenza Infections
inferred← citeshttps://doi.org/10.15302/j-qb-021-0258openalex-snapshot
Significance of differential allelic expression (DAE) in phenotypic plasticity and evolutionary potential of microbial eukaryotes
inferred← citeshttps://doi.org/10.1534/g3.115.022087openalex-snapshot
The Mouse Universal Genotyping Array: From Substrains to Subspecies
inferred← citeshttps://doi.org/10.1534/g3.117.300139openalex-snapshot
Direct Testing for Allele-Specific Expression Differences Between Conditions
inferred← citeshttps://doi.org/10.1534/g3.118.200135openalex-snapshot
Reciprocal F1 Hybrids of Two Inbred Mouse Strains Reveal Parent-of-Origin and Perinatal Diet Effects on Behavior and Expression
inferred← citeshttps://doi.org/10.1534/g3.118.200847openalex-snapshot
A Diallel of the Mouse Collaborative Cross Founders Reveals Strong Strain-Specific Maternal Effects on Litter Size
inferred← citeshttps://doi.org/10.1534/g3.119.400194openalex-snapshot
Determinants of QTL Mapping Power in the Realized Collaborative Cross
inferred← citeshttps://doi.org/10.1534/g3.120.400975openalex-snapshot
Antipsychotic Behavioral Phenotypes in the Mouse Collaborative Cross Recombinant Inbred Inter-Crosses (RIX)
inferred← citeshttps://doi.org/10.1534/genetics.113.160119openalex-snapshot
A Novel Statistical Approach for Jointly Analyzing RNA-Seq Data from F1 Reciprocal Crosses and Inbred Lines
inferred← citeshttps://doi.org/10.1534/genetics.115.176263openalex-snapshot
Allelic Imbalance Is a Prevalent and Tissue-Specific Feature of the Mouse Transcriptome
inferred← citeshttps://doi.org/10.1534/genetics.116.188797openalex-snapshot
Buffering of Genetic Regulatory Networks inDrosophila melanogaster
inferred← citeshttps://doi.org/10.1534/genetics.116.191007openalex-snapshot
The Evolutionary Fates of a Large Segmental Duplication in Mouse
inferred← citeshttps://doi.org/10.1534/genetics.116.198838openalex-snapshot
Genomes of the Mouse Collaborative Cross
inferred← citeshttps://doi.org/10.1534/genetics.117.300211openalex-snapshot
Identification of trans Protein QTL for Secreted Airway Mucins in Mice and a Causal Role for Bpifb1
inferred← citeshttps://doi.org/10.1534/genetics.119.302232openalex-snapshot
Instability of the Pseudoautosomal Boundary in House Mice
inferred← citeshttps://doi.org/10.1538/expanim.24-0002openalex-snapshot
Inter-subspecies mouse F1 hybrid embryonic stem cell lines newly established for studies of allelic imbalance in gene expression
inferred← citeshttps://doi.org/10.1538/expanim.24-0094openalex-snapshot
Enhancing the neural differentiation capabilities of genetically asymmetric mouse F1 hybrid embryonic stem cell lines
inferred← citeshttps://doi.org/10.17615/djvh-v717openalex-snapshot
INTER-INDIVIDUAL DIFFERENCES IN TRICHLOROETHYLENE TOXICOKINETICS AND TOXICODYNAMICS IN GENETICALLY-DIVERSE MICE
inferred← citeshttps://doi.org/10.21007/etd.cghs.2015.0237openalex-snapshot
Functional Analysis of Genomic Variation and Impact on Molecular and Higher Order Phenotypes
inferred← citeshttps://doi.org/10.21203/rs.3.rs-511600/v1openalex-snapshot
Evolutionary Analysis of Transcriptional Regulation Mediated by Cdx2 in Rodents
inferred← citeshttps://doi.org/10.21203/rs.3.rs-6481775/v1openalex-snapshot
Sexual Dimorphism in Gene Expression: A Genome-Wide Study of Tissue and Chromosome Dependencies
inferred← citeshttps://doi.org/10.21203/rs.3.rs-9936472/v1openalex-snapshot
Sexual Dimorphism in Gene Expression: A Multi-Tissue Genome-Wide Study in BXD Mice and Potential Insights into Human Biology
inferred← citeshttps://doi.org/10.24272/j.issn.2095-8137.2019.042openalex-snapshot
Allele-specific expression and alternative splicing in horse譫onkey and cattle讁ak hybrids
inferred← citeshttps://doi.org/10.3109/10409238.2015.1087961openalex-snapshot
Demystifying the secret mission of enhancers: linking distal regulatory elements to target genes
inferred← citeshttps://doi.org/10.3389/fcell.2021.717555openalex-snapshot
Systematic Analysis of Monoallelic Gene Expression and Chromatin Accessibility Across Multiple Tissues in Hybrid Mice
inferred← citeshttps://doi.org/10.3389/fcell.2022.1022422openalex-snapshot
Variable allelic expression of imprinted genes at the Peg13, Trappc9, Ago2 cluster in single neural cells
inferred← citeshttps://doi.org/10.3389/fgene.2019.00145openalex-snapshot
Genetic Basis of Phenotypic Differences Between Chinese Yunling Black Goats and Nubian Goats Revealed by Allele-Specific Expression in Their F1 Hybrids
inferred← citeshttps://doi.org/10.3389/fnmol.2025.1616363openalex-snapshot
A comprehensive analysis of allele-specific expression and transcriptomic profiling in pig limbic and endocrine tissues
inferred← citeshttps://doi.org/10.3389/fpls.2020.00132openalex-snapshot
Developmental Analysis of Mimulus Seed Transcriptomes Reveals Functional Gene Expression Clusters and Four Imprinted, Endosperm-Expressed Genes
inferred← citeshttps://doi.org/10.3389/fvets.2022.892663openalex-snapshot
Favoring Expression of Yak Alleles in Interspecies F1 Hybrids of Cattle and Yak Under High-Altitude Environments
inferred← citeshttps://doi.org/10.3390/ani15182766openalex-snapshot
A New Family-Based Approach for Detecting Allele-Specific Expression and for Mapping Possible eQTLs
inferred← citeshttps://doi.org/10.3390/genes11080920openalex-snapshot
Omics Application in Animal Science—A Special Emphasis on Stress Response and Damaging Behaviour in Pigs
inferred← citeshttps://doi.org/10.3410/f.735598751.793562838openalex-snapshot
Faculty Opinions recommendation of Natural Genetic Variation Reveals Key Features of Epigenetic and Transcriptional Memory in Virus-Specific CD8 T Cells.
inferred← citeshttps://doi.org/10.6084/m9.figshare.12153873openalex-snapshot
Additional file 1 of Short paired-end reads trump long single-end reads for expression analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.16599524openalex-snapshot
Additional file 1 of Single-nuclei chromatin profiling of ventral midbrain reveals cell identity transcription factors and cell-type-specific gene regulatory variation
inferred← citeshttps://doi.org/10.6084/m9.figshare.17087873openalex-snapshot
Additional file 1 of Power calculator for detecting allelic imbalance using hierarchical Bayesian model
inferred← citeshttps://doi.org/10.6084/m9.figshare.17087879openalex-snapshot
Additional file 3 of Power calculator for detecting allelic imbalance using hierarchical Bayesian model
inferred← citeshttps://doi.org/10.6084/m9.figshare.17087882openalex-snapshot
Additional file 4 of Power calculator for detecting allelic imbalance using hierarchical Bayesian model
inferred← citeshttps://doi.org/10.6084/m9.figshare.17087885openalex-snapshot
Additional file 5 of Power calculator for detecting allelic imbalance using hierarchical Bayesian model
inferred← citeshttps://doi.org/10.6084/m9.figshare.17087888openalex-snapshot
Additional file 6 of Power calculator for detecting allelic imbalance using hierarchical Bayesian model
inferred← citeshttps://doi.org/10.6084/m9.figshare.17087891openalex-snapshot
Additional file 7 of Power calculator for detecting allelic imbalance using hierarchical Bayesian model
inferred← citeshttps://doi.org/10.6084/m9.figshare.19728043openalex-snapshot
Additional file 1 of Comparative 3D genome architecture in vertebrates
inferred← citeshttps://doi.org/10.6084/m9.figshare.19728046openalex-snapshot
Additional file 2 of Comparative 3D genome architecture in vertebrates
inferred← citeshttps://doi.org/10.6084/m9.figshare.26603719openalex-snapshot
Additional file 1 of SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty
inferred← citeshttps://doi.org/10.6084/m9.figshare.26603722openalex-snapshot
Additional file 2 of SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty
inferred← citeshttps://doi.org/10.70675/82e19bd8z026ez4dabza0b6z3474c50172bcopenalex-snapshot
Etude des polymorphismes altérant la régulation de l'expression des gènes chez le bovin
inferred← citeshttps://doi.org/10.7554/elife.109938openalex-snapshot
Autosomal allelic inactivation at loci with variable replication timing and dosage sensitivity
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