On the public citation graph

Fantastic beasts and how to sequence them: genomic approaches for obscure model organisms

0 signed · 81 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1873-3468.12684openalex-snapshot

Computational approaches for interpreting sc RNA ‐seq data

inferredcites →https://doi.org/10.1002/ece3.2685openalex-snapshot

Transcriptome predictors of coral survival and growth in a highly variable environment

inferredcites →https://doi.org/10.1016/j.celrep.2013.05.031openalex-snapshot

Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis

inferredcites →https://doi.org/10.1016/j.cub.2014.10.044openalex-snapshot

Multilocus Adaptation Associated with Heat Resistance in Reef-Building Corals

inferredcites →https://doi.org/10.1016/j.tree.2014.10.004openalex-snapshot

Advances and limits of using population genetics to understand local adaptation

inferredcites →https://doi.org/10.1038/nature07107openalex-snapshot

Genome-scale DNA methylation maps of pluripotent and differentiated cells

inferredcites →https://doi.org/10.1038/nature08514openalex-snapshot

Human DNA methylomes at base resolution show widespread epigenomic differences

inferredcites →https://doi.org/10.1038/nbt.3238openalex-snapshot

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

inferredcites →https://doi.org/10.1038/nbt.3500openalex-snapshot

Haplotypes drop by drop

inferredcites →https://doi.org/10.1038/ncomms10408openalex-snapshot

Iron Age and Anglo-Saxon genomes from East England reveal British migration history

inferredcites →https://doi.org/10.1038/ncomms11388openalex-snapshot

Arabidopsis PROTEASOME REGULATOR1 is required for auxin-mediated suppression of proteasome activity and regulates auxin signalling

inferredcites →https://doi.org/10.1038/ncomms6770openalex-snapshot

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

inferredcites →https://doi.org/10.1038/ng.3222openalex-snapshot

Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance

inferredcites →https://doi.org/10.1038/ng.3367openalex-snapshot

A gene-based association method for mapping traits using reference transcriptome data

inferredcites →https://doi.org/10.1038/ng.3594openalex-snapshot

Rapid genotype imputation from sequence without reference panels

inferredcites →https://doi.org/10.1038/nmeth.1459openalex-snapshot

Direct detection of DNA methylation during single-molecule, real-time sequencing

inferredcites →https://doi.org/10.1038/nmeth.2769openalex-snapshot

The promise of single-cell sequencing

inferredcites →https://doi.org/10.1038/nmeth.4035openalex-snapshot

Phased diploid genome assembly with single-molecule real-time sequencing

inferredcites →https://doi.org/10.1038/nmeth.f.376openalex-snapshot

QuantSeq 3′ mRNA sequencing for RNA quantification

inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot

De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity

inferredcites →https://doi.org/10.1038/nrg.2015.28openalex-snapshot

Harnessing the power of RADseq for ecological and evolutionary genomics

inferredcites →https://doi.org/10.1038/s41467-018-03016-2openalex-snapshot

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

inferredcites →https://doi.org/10.1038/s41559-016-0014openalex-snapshot

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

inferredcites →https://doi.org/10.1038/s41598-017-07650-6openalex-snapshot

Rapid de novo assembly of the European eel genome from nanopore sequencing reads

inferredcites →https://doi.org/10.1073/pnas.0605565104openalex-snapshot

Adaptive evolution in humans revealed by the negative correlation between the polymorphism and fixation phases of evolution

inferredcites →https://doi.org/10.1073/pnas.1002720107openalex-snapshot

Conservation and divergence of methylation patterning in plants and animals

inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot

APE: Analyses of Phylogenetics and Evolution in R language

inferredcites →https://doi.org/10.1093/bioinformatics/btn129openalex-snapshot

adegenet : a R package for the multivariate analysis of genetic markers

inferredcites →https://doi.org/10.1093/bioinformatics/btr589openalex-snapshot

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

inferredcites →https://doi.org/10.1093/bioinformatics/btw152openalex-snapshot

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

inferredcites →https://doi.org/10.1093/gbe/evv258openalex-snapshot

Gene Networks in the Wild: Identifying Transcriptional Modules that Mediate Coral Resistance to Experimental Heat Stress

inferredcites →https://doi.org/10.1093/molbev/mss062openalex-snapshot

The Evolution of Invertebrate Gene Body Methylation

inferredcites →https://doi.org/10.1093/molbev/mst229openalex-snapshot

Characterizing Bias in Population Genetic Inferences from Low-Coverage Sequencing Data

inferredcites →https://doi.org/10.1093/molbev/msw100openalex-snapshot

Evolutionary Consequences of DNA Methylation in a Basal Metazoan

inferredcites →https://doi.org/10.1093/nar/gkp992openalex-snapshot

MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome

inferredcites →https://doi.org/10.1093/nar/gkr217openalex-snapshot

A method for counting PCR template molecules with application to next-generation sequencing

inferredcites →https://doi.org/10.1098/rsob.150130openalex-snapshot

MethylRAD: a simple and scalable method for genome-wide DNA methylation profiling using methylation-dependent restriction enzymes

inferredcites →https://doi.org/10.1101/094672openalex-snapshot

De novo Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1101/gr.214270.116openalex-snapshot

Fast and accurate de novo genome assembly from long uncorrected reads

inferredcites →https://doi.org/10.1101/gr.215087.116openalex-snapshot

Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation

inferredcites →https://doi.org/10.1111/1755-0998.12529openalex-snapshot

Evaluation of TagSeq, a reliable low‐cost alternative for RNA seq

inferredcites →https://doi.org/10.1111/1755-0998.12593openalex-snapshot

Practical low‐coverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species

inferredcites →https://doi.org/10.1111/1755-0998.12635openalex-snapshot

Breaking RAD: an evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation

inferredcites →https://doi.org/10.1111/1755-0998.12649openalex-snapshot

RAD seq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al. (2016)

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05205.xopenalex-snapshot

Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure

inferredcites →https://doi.org/10.1111/j.1467-7652.2012.00707.xopenalex-snapshot

Enrichment of genomic DNA for polymorphism detection in a non‐model highly polyploid crop plant

inferredcites →https://doi.org/10.1111/jeb.12212openalex-snapshot

Weak evidence for anticipatory parental effects in plants and animals

inferredcites →https://doi.org/10.1111/mec.12686openalex-snapshot

Recent novel approaches for population genomics data analysis

inferredcites →https://doi.org/10.1111/mec.12965openalex-snapshot

Demystifying the RAD fad

inferredcites →https://doi.org/10.1111/mec.13165openalex-snapshot

SNP genotyping and population genomics from expressed sequences – current advances and future possibilities

inferredcites →https://doi.org/10.1111/mec.13488openalex-snapshot

Red fluorescence in coral larvae is associated with a diapause‐like state

inferredcites →https://doi.org/10.1126/science.1261224openalex-snapshot

Genomic determinants of coral heat tolerance across latitudes

inferredcites →https://doi.org/10.1126/science.1262110openalex-snapshot

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

inferredcites →https://doi.org/10.1126/science.aaa0355openalex-snapshot

The human transcriptome across tissues and individuals

inferredcites →https://doi.org/10.1126/science.aae0344openalex-snapshot

Long-read sequence assembly of the gorilla genome

inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot

WGCNA: an R package for weighted correlation network analysis

inferredcites →https://doi.org/10.1186/1471-2164-12-347openalex-snapshot

Exome-wide DNA capture and next generation sequencing in domestic and wild species

inferredcites →https://doi.org/10.1186/1471-2164-15-1109openalex-snapshot

Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora

inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot

ANGSD: Analysis of Next Generation Sequencing Data

inferredcites →https://doi.org/10.1186/s12862-014-0254-4openalex-snapshot

Sampling strategies for frequency spectrum-based population genomic inference

inferredcites →https://doi.org/10.1186/s12864-015-1540-2openalex-snapshot

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

inferredcites →https://doi.org/10.1186/s13059-017-1263-6openalex-snapshot

Epigenetic and chromatin-based mechanisms in environmental stress adaptation and stress memory in plants

inferredcites →https://doi.org/10.1371/journal.pcbi.1002935openalex-snapshot

Detecting DNA Modifications from SMRT Sequencing Data by Modeling Sequence Context Dependence of Polymerase Kinetic

inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

inferredcites →https://doi.org/10.1371/journal.pgen.1003905openalex-snapshot

Robust Demographic Inference from Genomic and SNP Data

inferredcites →https://doi.org/10.1371/journal.pgen.1006423openalex-snapshot

Survey of the Heritability and Sparse Architecture of Gene Expression Traits across Human Tissues

inferredcites →https://doi.org/10.1371/journal.pgen.1007220openalex-snapshot

Potential and limits for rapid genetic adaptation to warming in a Great Barrier Reef coral

inferredcites →https://doi.org/10.1371/journal.pone.0037558openalex-snapshot

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

inferredcites →https://doi.org/10.1534/g3.115.021667openalex-snapshot

LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms

inferredcites →https://doi.org/10.1534/genetics.110.114397openalex-snapshot

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

inferredcites →https://doi.org/10.1534/genetics.113.152462openalex-snapshot

Robust Identification of Local Adaptation from Allele Frequencies

inferredcites →https://doi.org/10.1534/genetics.117.200493openalex-snapshot

Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation

inferredcites →https://doi.org/10.2144/000112708openalex-snapshot

Methyl-DNA Immunoprecipitation (MeDIP): Hunting down the DNA Methylome

inferredcites →https://doi.org/10.2144/000112900openalex-snapshot

Profiling the HeLa S3 Transcriptome using Randomly Primed cDNA and Massively Parallel Short-Read Sequencing

inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot

vegan: Community Ecology Package

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-319-95825-5_13openalex-snapshot

Molecular Mapping of Genes and QTL: Progress to Date and Development of New Population Resources for NGS Genetics

inferred← citeshttps://doi.org/10.1016/j.gene.2018.03.073openalex-snapshot

A transcriptomic investigation of digestive processes in orange-spotted grouper, Epinephelus coioides, before, during, and after metamorphic development

inferred← citeshttps://doi.org/10.1111/1755-0998.13801openalex-snapshot

A second unveiling: Haplotig masking of the eastern oyster genome improves population‐level inference

inferred← citeshttps://doi.org/10.1111/jfb.13798openalex-snapshot

A transcriptomic investigation of appetite‐regulation and digestive processes in giant grouper Epinephelus lanceolatus during early larval development

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.