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Bayesian inference of ancient human demography from individual genome sequences
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Evolution of Protein Molecules
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Mitochondrial DNA and human evolution
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Complete Khoisan and Bantu genomes from southern Africa
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A map of human genome variation from population-scale sequencing
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Genetic history of an archaic hominin group from Denisova Cave in Siberia
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The application of molecular genetic approaches to the study of human evolution
inferredcites →https://doi.org/10.1038/ng2116openalex-snapshot
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Statistical evaluation of alternative models of human evolution
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Approximate Bayesian Computation in Population Genetics
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Genome Scans of DNA Variability in Humans Reveal Evidence for Selective Sweeps Outside of Africa
inferredcites →https://doi.org/10.1093/molbev/msl209openalex-snapshot
Whole-mtDNA Genome Sequence Analysis of Ancient African Lineages
inferredcites →https://doi.org/10.1093/molbev/msn148openalex-snapshot
Estimation of Hominoid Ancestral Population Sizes under Bayesian Coalescent Models Incorporating Mutation Rate Variation and Sequencing Errors
inferredcites →https://doi.org/10.1093/molbev/msp096openalex-snapshot
Detecting Ancient Admixture and Estimating Demographic Parameters in Multiple Human Populations
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inferredcites →https://doi.org/10.1101/gr.088013.108openalex-snapshot
SNP detection for massively parallel whole-genome resequencing
inferredcites →https://doi.org/10.1101/gr.092072.109openalex-snapshot
A probabilistic approach for SNP discovery in high-throughput human resequencing data
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inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.187101openalex-snapshot
Segmental Duplications: Organization and Impact Within the Current Human Genome Project Assembly
inferredcites →https://doi.org/10.1101/gr.3709305openalex-snapshot
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inferredcites →https://doi.org/10.1101/gr.9.9.868openalex-snapshot
CAP3: A DNA Sequence Assembly Program
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The Genetic Structure and History of Africans and African Americans
inferredcites →https://doi.org/10.1126/science.1188021openalex-snapshot
A Draft Sequence of the Neandertal Genome
inferredcites →https://doi.org/10.1371/journal.pbio.0050254openalex-snapshot
The Diploid Genome Sequence of an Individual Human
inferredcites →https://doi.org/10.1371/journal.pgen.0020105openalex-snapshot
Possible Ancestral Structure in Human Populations
inferredcites →https://doi.org/10.1371/journal.pgen.0030007openalex-snapshot
Genomic Relationships and Speciation Times of Human, Chimpanzee, and Gorilla Inferred from a Coalescent Hidden Markov Model
inferredcites →https://doi.org/10.1371/journal.pgen.1000057openalex-snapshot
Analysis of Chimpanzee History Based on Genome Sequence Alignments
inferredcites →https://doi.org/10.1371/journal.pgen.1000471openalex-snapshot
Widespread Genomic Signatures of Natural Selection in Hominid Evolution
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pone.0010284openalex-snapshot
Formulating a Historical and Demographic Model of Recent Human Evolution Based on Resequencing Data from Noncoding Regions
inferredcites →https://doi.org/10.1534/genetics.107.077495openalex-snapshot
Inferring Human Population Sizes, Divergence Times and Rates of Gene Flow From Mitochondrial, X and Y Chromosome Resequencing Data
inferredcites →https://doi.org/10.1534/genetics.110.125534openalex-snapshot
An Accurate Sequentially Markov Conditional Sampling Distribution for the Coalescent With Recombination
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inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106973openalex-snapshot
Comparative phylogeographic and demographic analyses reveal a congruent pattern of sister relationships between bird populations of the northern and south-central Atlantic Forest
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107205openalex-snapshot
Genomic phylogeography of the White-crowned Manakin Pseudopipra pipra (Aves: Pipridae) illuminates a continental-scale radiation out of the Andes
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107220openalex-snapshot
Sympatric and independently evolving lineages in the Thoropa miliaris – T. taophora species complex (Anura: Cycloramphidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107313openalex-snapshot
Genome-wide data reveal extensive gene flow during the diversification of the western rattlesnakes (Viperidae: Crotalinae: Crotalus)
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107801openalex-snapshot
Genome-wide data reveal cryptic diversity and hybridization in a group of tree ferns
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107853openalex-snapshot
Bewildering biogeography: Waves of dispersal and diversification across southern Wallacea by bent-toed geckos (genus: Cyrtodactylus)
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108157openalex-snapshot
Genetic diversity of the largest African mole-rat genus, Bathyergus. One, two or four species?
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108442openalex-snapshot
Isolation and divergence of Greater Earless Lizards (Phrynosomatidae: Cophosaurus) in western North America support multiple diversification processes and a complex demographic history
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108448openalex-snapshot
Hidden diversity in the driest desert on Earth: genomics unveils cryptic diversity in an ancient South American gecko lineage (Phyllodactylidae, Garthia)
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108544openalex-snapshot
Continental diversification and insular speciation in a widespread passerine (Troglodytes musculus) in southern South America
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108558openalex-snapshot
Ancient gene flow shapes phylogenetic discordance in a genus of wood-warblers (Aves: Parulidae: Leiothlypis)
inferred← citeshttps://doi.org/10.1017/9781316716694.005openalex-snapshot
A Feeling for the Phenotype
inferred← citeshttps://doi.org/10.1017/cbo9781139003308.011openalex-snapshot
Population structure and migration in Africa: correlations between archaeological, linguistic, and genetic data
inferred← citeshttps://doi.org/10.1038/cr.2015.147openalex-snapshot
Out of southern East Asia: the natural history of domestic dogs across the world
inferred← citeshttps://doi.org/10.1038/ejhg.2015.258openalex-snapshot
Estimating time to the most recent common ancestor (TMRCA): comparison and application of eight methods
inferred← citeshttps://doi.org/10.1038/nature13679openalex-snapshot
Gibbon genome and the fast karyotype evolution of small apes
inferred← citeshttps://doi.org/10.1038/nature16544openalex-snapshot
Ancient gene flow from early modern humans into Eastern Neanderthals
inferred← citeshttps://doi.org/10.1038/nature18964openalex-snapshot
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations
inferred← citeshttps://doi.org/10.1038/nature21038openalex-snapshot
Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution
inferred← citeshttps://doi.org/10.1038/nature21347openalex-snapshot
Tracing the peopling of the world through genomics
inferred← citeshttps://doi.org/10.1038/nature22335openalex-snapshot
The age of the hominin fossils from Jebel Irhoud, Morocco, and the origins of the Middle Stone Age
inferred← citeshttps://doi.org/10.1038/ncomms12679openalex-snapshot
Comparative genomics reveals convergent rates of evolution in ant–plant mutualisms
inferred← citeshttps://doi.org/10.1038/ncomms16082openalex-snapshot
Ancient European dog genomes reveal continuity since the Early Neolithic
inferred← citeshttps://doi.org/10.1038/ncomms6692openalex-snapshot
Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history
inferred← citeshttps://doi.org/10.1038/ncomms8502openalex-snapshot
Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations
inferred← citeshttps://doi.org/10.1038/ncomms9824openalex-snapshot
Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop
inferred← citeshttps://doi.org/10.1038/ncomms9912openalex-snapshot
Upper Palaeolithic genomes reveal deep roots of modern Eurasians
inferred← citeshttps://doi.org/10.1038/ng.3015openalex-snapshot
Inferring human population size and separation history from multiple genome sequences
inferred← citeshttps://doi.org/10.1038/ng.3186openalex-snapshot
No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans
inferred← citeshttps://doi.org/10.1038/ng.3196openalex-snapshot
A method for calculating probabilities of fitness consequences for point mutations across the human genome
inferred← citeshttps://doi.org/10.1038/ng.3633openalex-snapshot
Domestication history and geographical adaptation inferred from a SNP map of African rice
inferred← citeshttps://doi.org/10.1038/ng.953openalex-snapshot
Whole-genome sequencing data offer insights into human demography
inferred← citeshttps://doi.org/10.1038/nplants.2016.149openalex-snapshot
Tracing ancestor rice of Suriname Maroons back to its African origin
inferred← citeshttps://doi.org/10.1038/nrg3186openalex-snapshot
Molecular phylogenetics: principles and practice
inferred← citeshttps://doi.org/10.1038/nrg3295openalex-snapshot
Revising the human mutation rate: implications for understanding human evolution
inferred← citeshttps://doi.org/10.1038/nrg3446openalex-snapshot
Understanding the origin of species with genome-scale data: modelling gene flow
inferred← citeshttps://doi.org/10.1038/nrg3625openalex-snapshot
The impact of whole-genome sequencing on the reconstruction of human population history
inferred← citeshttps://doi.org/10.1038/nrg3931openalex-snapshot
Estimating the mutation load in human genomes
inferred← citeshttps://doi.org/10.1038/nrg3936openalex-snapshot
Evidence for archaic adaptive introgression in humans
inferred← citeshttps://doi.org/10.1038/nrg4005openalex-snapshot
Methods and models for unravelling human evolutionary history
inferred← citeshttps://doi.org/10.1038/s41437-018-0148-0openalex-snapshot
The IICR and the non-stationary structured coalescent: towards demographic inference with arbitrary changes in population structure
inferred← citeshttps://doi.org/10.1038/s41437-022-00571-9openalex-snapshot
Testing assertions of widespread introgressive hybridization in a clade of neotropical toads with low mate selectivity (Rhinella granulosa species group)
inferred← citeshttps://doi.org/10.1038/s41467-017-01370-1openalex-snapshot
Tracing the origin and evolution of supergene mimicry in butterflies
inferred← citeshttps://doi.org/10.1038/s41467-018-02867-zopenalex-snapshot
Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation
inferred← citeshttps://doi.org/10.1038/s41467-018-03100-7openalex-snapshot
Localization of adaptive variants in human genomes using averaged one-dependence estimation
inferred← citeshttps://doi.org/10.1038/s41467-019-12169-7openalex-snapshot
Repeated species radiations in the recent evolution of the key marine phytoplankton lineage Gephyrocapsa
inferred← citeshttps://doi.org/10.1038/s41467-020-14515-6openalex-snapshot
Genomic regions under selection in the feralization of the dingoes
inferred← citeshttps://doi.org/10.1038/s41467-021-21379-xopenalex-snapshot
Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution
inferred← citeshttps://doi.org/10.1038/s41467-022-30009-zopenalex-snapshot
Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history
inferred← citeshttps://doi.org/10.1038/s41467-025-56579-2openalex-snapshot
A humanized NOVA1 splicing factor alters mouse vocal communications
inferred← citeshttps://doi.org/10.1038/s41467-026-69173-xopenalex-snapshot
Genomics of rafting crustaceans reveals adaptation to climate change in tropical oceans
inferred← citeshttps://doi.org/10.1038/s41467-026-71057-zopenalex-snapshot
Scaling up Bayesian population phylogenomics through virtual dimension reduction
inferred← citeshttps://doi.org/10.1038/s41559-023-02185-8openalex-snapshot
Ancient DNA reveals genetic admixture in China during tiger evolution
inferred← citeshttps://doi.org/10.1038/s41564-018-0162-2openalex-snapshot
Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria
inferred← citeshttps://doi.org/10.1038/s41576-024-00772-4openalex-snapshot
Inference and applications of ancestral recombination graphs
inferred← citeshttps://doi.org/10.1038/s41576-026-00995-7openalex-snapshot
Genetics and genomics of hybridization
inferred← citeshttps://doi.org/10.1038/s41582-023-00789-zopenalex-snapshot
A global view of the genetic basis of Alzheimer disease
inferred← citeshttps://doi.org/10.1038/s41586-020-1929-1openalex-snapshot
Ancient West African foragers in the context of African population history
inferred← citeshttps://doi.org/10.1038/s41586-021-03244-5openalex-snapshot
Origins of modern human ancestry
inferred← citeshttps://doi.org/10.1038/s41586-022-05349-xopenalex-snapshot
Evolution of immune genes is associated with the Black Death
inferred← citeshttps://doi.org/10.1038/s41586-024-07263-wopenalex-snapshot
Hybrid speciation driven by multilocus introgression of ecological traits
inferred← citeshttps://doi.org/10.1038/s41586-025-09811-4openalex-snapshot
Homo sapiens-specific evolution unveiled by ancient southern African genomes
inferred← citeshttps://doi.org/10.1038/s41588-020-0607-4openalex-snapshot
Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution
inferred← citeshttps://doi.org/10.1038/s41597-021-00980-1openalex-snapshot
A curated dataset of modern and ancient high-coverage shotgun human genomes
inferred← citeshttps://doi.org/10.1038/s41597-025-06124-zopenalex-snapshot
A curated dataset of great ape genome diversity
inferred← citeshttps://doi.org/10.1038/s41598-017-01837-7openalex-snapshot
Human ancestry correlates with language and reveals that race is not an objective genomic classifier
inferred← citeshttps://doi.org/10.1038/s41598-017-10106-6openalex-snapshot
The Genetic Origin of Short Tail in Endangered Korean Dog, DongGyeongi
inferred← citeshttps://doi.org/10.1038/s41598-018-23350-1openalex-snapshot
Human cytochrome P450 2B6 genetic variability in Botswana: a case of haplotype diversity and convergent phenotypes
inferred← citeshttps://doi.org/10.1038/s41598-019-44772-5openalex-snapshot
Comparative genomics provides new insights into the remarkable adaptations of the African wild dog (Lycaon pictus)
inferred← citeshttps://doi.org/10.1038/s41598-020-66734-yopenalex-snapshot
Recent effective population size in Eastern European plain Russians correlates with the key historical events
inferred← citeshttps://doi.org/10.1038/s41598-021-88417-yopenalex-snapshot
Revisiting the hyperdominance of Neotropical tree species under a taxonomic, functional and evolutionary perspective
inferred← citeshttps://doi.org/10.1038/s42003-019-0734-6openalex-snapshot
Whole-genome sequencing of 128 camels across Asia reveals origin and migration of domestic Bactrian camels
inferred← citeshttps://doi.org/10.1038/s42003-024-07278-zopenalex-snapshot
Evolutionary genomics of Leishmania braziliensis across the neotropical realm
inferred← citeshttps://doi.org/10.1038/s42003-026-10330-9openalex-snapshot
Revisiting the African mtDNA landscape through complete mitochondrial genomes
inferred← citeshttps://doi.org/10.1038/srep06055openalex-snapshot
Genome-wide genotype and sequence-based reconstruction of the 140,000 year history of modern human ancestry
inferred← citeshttps://doi.org/10.1038/srep20079openalex-snapshot
Inferring the Dynamics of Effective Population Size Using Autosomal Genomes
inferred← citeshttps://doi.org/10.1038/srep20954openalex-snapshot
Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection
inferred← citeshttps://doi.org/10.1038/srep35004openalex-snapshot
Identifying molecular signatures of hypoxia adaptation from sex chromosomes: A case for Tibetan Mastiff based on analyses of X chromosome
inferred← citeshttps://doi.org/10.1073/pnas.1200567109openalex-snapshot
Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins
inferred← citeshttps://doi.org/10.1073/pnas.1400425111openalex-snapshot
Storytelling and story testing in domestication
inferred← citeshttps://doi.org/10.1073/pnas.1401526111openalex-snapshot
Drastic population fluctuations explain the rapid extinction of the passenger pigeon
inferred← citeshttps://doi.org/10.1073/pnas.1410111111openalex-snapshot
Pleistocene range dynamics and episodic rarity in an extinct bird
inferred← citeshttps://doi.org/10.1073/pnas.1514896112openalex-snapshot
Sympatric speciation revealed by genome-wide divergence in the blind mole rat Spalax
inferred← citeshttps://doi.org/10.1073/pnas.1603795113openalex-snapshot
Explosive ice age diversification of kiwi
inferred← citeshttps://doi.org/10.1073/pnas.1620752114openalex-snapshot
Identifying early modern human ecological niche expansions and associated cultural dynamics in the South African Middle Stone Age
inferred← citeshttps://doi.org/10.1073/pnas.1703642114openalex-snapshot
Estimating mobility using sparse data: Application to human genetic variation
inferred← citeshttps://doi.org/10.1073/pnas.1716257115openalex-snapshot
Selection and environmental adaptation along a path to speciation in the Tibetan frog Nanorana parkeri
inferred← citeshttps://doi.org/10.1073/pnas.1719880115openalex-snapshot
Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria
inferred← citeshttps://doi.org/10.1073/pnas.1801948115openalex-snapshot
Rapid evolution of a skin-lightening allele in southern African KhoeSan
inferred← citeshttps://doi.org/10.1073/pnas.1813597116openalex-snapshot
Standing genetic variation as the predominant source for adaptation of a songbird
inferred← citeshttps://doi.org/10.1073/pnas.1901872116openalex-snapshot
Weak warning signals can persist in the absence of gene flow
inferred← citeshttps://doi.org/10.1073/pnas.2023801118openalex-snapshot
Ancestral polymorphisms shape the adaptive radiation of Metrosideros across the Hawaiian Islands
inferred← citeshttps://doi.org/10.1073/pnas.2205986119openalex-snapshot
Comparative genomics uncovers the evolutionary history, demography, and molecular adaptations of South American canids
inferred← citeshttps://doi.org/10.1073/pnas.2310708120openalex-snapshot
Efficient Bayesian inference under the multispecies coalescent with migration
inferred← citeshttps://doi.org/10.1073/pnas.2410949122openalex-snapshot
The power of coalescent methods for inferring recent and ancient gene flow in endangered Bactrian camels
inferred← citeshttps://doi.org/10.1080/15592294.2020.1809852openalex-snapshot
DNA methylation profiles unique to Kalahari KhoeSan individuals
inferred← citeshttps://doi.org/10.1086/693856openalex-snapshot
Habitat Association Predicts Genetic Diversity and Population Divergence in Amazonian Birds
inferred← citeshttps://doi.org/10.1086/694422openalex-snapshot
A Genomic View of the Pleistocene Population History of Asia
inferred← citeshttps://doi.org/10.1086/720130openalex-snapshot
How Neanderthals Became White: The Introgression of Race into Contemporary Human Evolutionary Genetics
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