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Estimation of Hominoid Ancestral Population Sizes under Bayesian Coalescent Models Incorporating Mutation Rate Variation and Sequencing Errors
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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A new genus of large primate from the Late Oligocene of Lothidok, Turkana District, Kenya
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Rates of Nucleotide Substitution in Primates and Rodents and the Generation–Time Effect Hypothesis
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Divergence Time and Population Size in the Lineage Leading to Modern Humans
inferredcites →https://doi.org/10.1007/978-1-4615-2383-3_4openalex-snapshot
Selection, Recombination, and DNA Polymorphism in Drosophila
inferredcites →https://doi.org/10.1007/978-1-4615-6974-9_3openalex-snapshot
Extent of Protein Polymorphism and the Neutral Mutation Theory
inferredcites →https://doi.org/10.1007/978-3-642-84622-9openalex-snapshot
Molecular Evolution of the Major Histocompatibility Complex
inferredcites →https://doi.org/10.1007/978-3-642-84622-9_4openalex-snapshot
Calibrating Evolutionary Rates at Major Histocompatibility Complex Loci
inferredcites →https://doi.org/10.1007/bf00160154openalex-snapshot
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
inferredcites →https://doi.org/10.1007/bf02101694openalex-snapshot
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
inferredcites →https://doi.org/10.1007/bf02111284openalex-snapshot
Transitions, transversions, and the molecular evolutionary clock
inferredcites →https://doi.org/10.1007/bf02717892openalex-snapshot
The rate of spontaneous mutation of a human gene
inferredcites →https://doi.org/10.1007/bf02982403openalex-snapshot
The rate of spontaneous mutation of a human gene
inferredcites →https://doi.org/10.1007/s00239-004-2639-2openalex-snapshot
Ancestral Population Sizes and Species Divergence Times in the Primate Lineage on the Basis of Intron and BAC End Sequences
inferredcites →https://doi.org/10.1007/s00239-005-0308-8openalex-snapshot
Mammalian Male Mutation Bias: Impacts of Generation Time and Regional Variation in Substitution Rates
inferredcites →https://doi.org/10.1016/b978-1-4832-3210-2.50006-6openalex-snapshot
Mammalian Protein Metabolism
inferredcites →https://doi.org/10.1016/b978-1-4832-3211-9.50009-7openalex-snapshot
Evolution of Protein Molecules
inferredcites →https://doi.org/10.1016/j.cub.2006.04.033openalex-snapshot
Demographic History and Genetic Differentiation in Apes
inferredcites →https://doi.org/10.1016/j.cub.2006.07.032openalex-snapshot
Evolutionary Biology: How Did the Human Species Form?
inferredcites →https://doi.org/10.1016/j.ympev.2006.05.021openalex-snapshot
Primate molecular divergence dates
inferredcites →https://doi.org/10.1016/s1251-8050(01)01529-4openalex-snapshot
First hominid from the Miocene (Lukeino Formation, Kenya)
inferredcites →https://doi.org/10.1017/s0016672300014634openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1017/s001667230002499xopenalex-snapshot
An attempt to estimate the effective size of the ancestral species common to two extant species from which homologous genes are sequenced
inferredcites →https://doi.org/10.1017/s0016672300034029openalex-snapshot
Background selection and patterns of genetic diversity inDrosophila melanogaster
inferredcites →https://doi.org/10.1017/s0016672308009579openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1017/s001667239700270xopenalex-snapshot
On the estimation of ancestral population sizes of modern humans
inferredcites →https://doi.org/10.1038/35057062openalex-snapshot
Initial sequencing and analysis of the human genome
inferredcites →https://doi.org/10.1038/35057149openalex-snapshot
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
inferredcites →https://doi.org/10.1038/84773openalex-snapshot
Great ape DNA sequences reveal a reduced diversity and an expansion in humans
inferredcites →https://doi.org/10.1038/nature00879openalex-snapshot
A new hominid from the Upper Miocene of Chad, Central Africa
inferredcites →https://doi.org/10.1038/nature04072openalex-snapshot
Initial sequence of the chimpanzee genome and comparison with the human genome
inferredcites →https://doi.org/10.1038/nature04789openalex-snapshot
Genetic evidence for complex speciation of humans and chimpanzees
inferredcites →https://doi.org/10.1038/nature06805openalex-snapshot
Complex speciation of humans and chimpanzees
inferredcites →https://doi.org/10.1038/ng1529openalex-snapshot
Fine-scale recombination patterns differ between chimpanzees and humans
inferredcites →https://doi.org/10.1038/nrg798openalex-snapshot
Alu repeats and human genomic diversity
inferredcites →https://doi.org/10.1073/pnas.97.11.5960openalex-snapshot
Reduced X-linked nucleotide polymorphism in Drosophila simulans
inferredcites →https://doi.org/10.1073/pnas.97.12.6634openalex-snapshot
Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: The Lyon repeat hypothesis
inferredcites →https://doi.org/10.1086/284701openalex-snapshot
The Relative Rates of Evolution of Sex Chromosomes and Autosomes
inferredcites →https://doi.org/10.1086/318206openalex-snapshot
Genomic Divergences between Humans and Other Hominoids and the Effective Population Size of the Common Ancestor of Humans and Chimpanzees
inferredcites →https://doi.org/10.1086/426405openalex-snapshot
A Combined Linkage-Physical Map of the Human Genome
inferredcites →https://doi.org/10.1093/bioinformatics/13.5.555openalex-snapshot
PAML: a program package for phylogenetic analysis by maximum likelihood
inferredcites →https://doi.org/10.1093/genetics/105.2.437openalex-snapshot
EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/134.4.1289openalex-snapshot
The effect of deleterious mutations on neutral molecular variation.
inferredcites →https://doi.org/10.1093/genetics/162.4.1811openalex-snapshot
Likelihood and Bayes Estimation of Ancestral Population Sizes in Hominoids Using Data From Multiple Loci
inferredcites →https://doi.org/10.1093/genetics/164.4.1645openalex-snapshot
Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci
inferredcites →https://doi.org/10.1093/genetics/21.2.113openalex-snapshot
STUDIES ON HYBRID STERILITY. II. LOCALIZATION OF STERILITY FACTORS IN DROSOPHILA PSEUDOOBSCURA HYBRIDS
inferredcites →https://doi.org/10.1093/genetics/49.4.725openalex-snapshot
THE NUMBER OF ALLELES THAT CAN BE MAINTAINED IN A FINITE POPULATION
inferredcites →https://doi.org/10.1093/molbev/msj060openalex-snapshot
Strong and Weak Male Mutation Bias at Different Sites in the Primate Genomes: Insights from the Human-Chimpanzee Comparison
inferredcites →https://doi.org/10.1093/molbev/msj109openalex-snapshot
The Effect of Gene Flow on the Coalescent Time in the Human-Chimpanzee Ancestral Population
inferredcites →https://doi.org/10.1093/molbev/msm239openalex-snapshot
Accounting for Bias from Sequencing Error in Population Genetic Estimates
inferredcites →https://doi.org/10.1093/nar/20.13.3397openalex-snapshot
Origin of the Alu family: a family of Alu-like monomers gave birth to the left and the right arms of the Alu elements
inferredcites →https://doi.org/10.1093/nar/21.8.1863openalex-snapshot
Identification of a new, abundant superfamily of mammalian LTR-transposons
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003795openalex-snapshot
Global Patterns of Human DNA Sequence Variation in a 10-kb Region on Chromosome 1
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004043openalex-snapshot
Slow Molecular Clocks in Old World Monkeys, Apes, and Humans
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a039995openalex-snapshot
Allelic genealogy and human evolution.
inferredcites →https://doi.org/10.1098/rspb.2006.3720openalex-snapshot
Characteristics, causes and evolutionary consequences of male-biased mutation
inferredcites →https://doi.org/10.1101/gr.4001406openalex-snapshot
Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates
inferredcites →https://doi.org/10.1101/gr.6023607openalex-snapshot
Recent human effective population size estimated from linkage disequilibrium
inferredcites →https://doi.org/10.1101/sqb.1987.052.01.094openalex-snapshot
Male-driven Molecular Evolution: A Model and Nucleotide Sequence Analysis
inferredcites →https://doi.org/10.1111/j.0014-3820.2000.tb01262.xopenalex-snapshot
GENE FLOW BETWEEN DROSOPHILA PSEUDOOBSCURA AND D. PERSIMILIS
inferredcites →https://doi.org/10.1111/j.1558-5646.1983.tb05528.xopenalex-snapshot
TESTING THE CONSTANT-RATE NEUTRAL ALLELE MODEL WITH PROTEIN SEQUENCE DATA
inferredcites →https://doi.org/10.1146/annurev.anthro.27.1.197openalex-snapshot
THE COMPARATIVE DEMOGRAPHY OF PRIMATES: With Some Comments on the Evolution of Life Histories
inferredcites →https://doi.org/10.1146/annurev.genom.7.080505.115700openalex-snapshot
The Evolutionary Dynamics of Human Endogenous Retroviral Families
inferredcites →https://doi.org/10.1159/000014969openalex-snapshot
X-Chromosome inactivation: a repeat hypothesis
inferredcites →https://doi.org/10.1186/1741-7007-4-11openalex-snapshot
Polyphyly and gene flow between non-sibling Heliconius species
inferredcites →https://doi.org/10.1371/journal.pgen.0020163openalex-snapshot
Heterogeneous Genomic Molecular Clocks in Primates
inferredcites →https://doi.org/10.1371/journal.pgen.0030007openalex-snapshot
Genomic Relationships and Speciation Times of Human, Chimpanzee, and Gorilla Inferred from a Coalescent Hidden Markov Model
inferredcites →https://doi.org/10.1534/genetics.104.030999openalex-snapshot
A Pseudohitchhiking Model of X vs. Autosomal Diversity
inferredcites →https://doi.org/10.1534/genetics.105.054106openalex-snapshot
Contrasting Patterns of Introgression at X-Linked Loci Across the Hybrid Zone Between Subspecies of the European Rabbit (Oryctolagus cuniculus)
inferredcites →https://doi.org/10.1534/genetics.166.3.1375openalex-snapshot
Nucleotide Diversity in Gorillas
inferredcites →https://doi.org/10.2307/5814openalex-snapshot
Non-neutral Evolution: Theories and Molecular Data
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Hypertension Increases With Aging and Obesity in Chimpanzees ( P an troglodytes)
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Ancestral Population Genomics
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Ancestral Population Genomics
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A Comparative Approach Shows Differences in Patterns of Numt Insertion During Hominoid Evolution
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Coalescent analysis of mtDNA indicates Pleistocene divergence among three species of howler monkey (Alouatta spp.) and population subdivision within the Atlantic Coastal Forest species, A. guariba
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Ernst Mayr, the tree of life, and philosophy of biology
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Estimation of the ancestral effective population sizes of African great apes under different selection regimes
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Female-to-Male Breeding Ratio in Modern Humans—an Analysis Based on Historical Recombinations
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Contrasting X-Linked and Autosomal Diversity across 14 Human Populations
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Adaptive Evolution Is Common in Rapid Evolutionary Radiations
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The mutation rate in human evolution and demographic inference
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The limiting distribution of the effective population size of the ancestor of humans and chimpanzees
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Rapidly evolving genes in pathogens: Methods for detecting positive selection and examples among fungi, bacteria, viruses and protists
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Molecular Clocks without Rocks: New Solutions for Old Problems
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Doubts about complex speciation between humans and chimpanzees
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Primate molecular phylogenetics in a genomic era
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A scalable and flexible approach for investigating the genomic landscapes of phylogenetic incongruence
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Molecular phylogenetics and phylogeographic structure of Sorex bedfordiae based on mitochondrial and nuclear DNA sequences
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Distribution of coalescent histories under the coalescent model with gene flow
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Multilocus approaches reveal underestimated species diversity and inter-specific gene flow in pikas (Ochotona) from southwestern China
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Multilocus phylogeny of African striped grass mice (Lemniscomys): Stripe pattern only partly reflects evolutionary relationships
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Autosomal, sex-linked and mitochondrial loci resolve evolutionary relationships among wrens in the genus Campylorhynchus
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Multi-locus phylogeny and species delimitations of the striped-back shrew group (Eulipotyphla: Soricidae): Implications for cryptic diversity, taxonomy and multiple speciation patterns
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Insights into hominid evolution from the gorilla genome sequence
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A direct characterization of human mutation based on microsatellites
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Bayesian inference of ancient human demography from individual genome sequences
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Molecular phylogenetics: principles and practice
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Pedigree-based and phylogenetic methods support surprising patterns of mutation rate and spectrum in the gray mouse lemur
inferred← citeshttps://doi.org/10.1038/srep38302openalex-snapshot
Catalysis and Structure of Zebrafish Urate Oxidase Provide Insights into the Origin of Hyperuricemia in Hominoids
inferred← citeshttps://doi.org/10.1073/pnas.0909000107openalex-snapshot
Mobile elements reveal small population size in the ancient ancestors of Homo sapiens
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Bayesian species delimitation using multilocus sequence data
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Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution
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Efficient Bayesian inference under the multispecies coalescent with migration
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Disentangling disjunctus: an integrated analysis of the patent leather beetle, Odontotaenius disjunctus complex (Passalidae: Coleoptera) with the description of two new species
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A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting
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Molecular Evolution
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Copyright Page
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Models of nucleotide substitution
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Models of amino acid and codon substitution
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Phylogeny reconstruction: overview
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Maximum likelihood methods
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Comparison of phylogenetic methods and tests on trees
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Bayesian theory
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Bayesian computation (MCMC)
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Bayesian phylogenetics
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Coalescent theory and species trees
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Molecular clock and estimation of species divergence times
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Neutral and adaptive protein evolution
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Simulating molecular evolution
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The BPP program for species tree estimation and species delimitation
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The impact of ancestral population size and incomplete lineage sorting on Bayesian estimation of species divergence times
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Maximum Likelihood Estimation of Species Trees from Gene Trees in the Presence of Ancestral Population Structure
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Factors That Affect the Rates of Adaptive and Nonadaptive Evolution at the Gene Level in Humans and Chimpanzees
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A Likelihood Ratio Test of Speciation with Gene Flow Using Genomic Sequence Data
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Mutation Rate Distribution Inferred from Coincident SNPs and Coincident Substitutions
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Reconstructing the Demographic History of the Human Lineage Using Whole-Genome Sequences from Human and Three Great Apes
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Finite Populations, Finite Resources, and the Evolutionary Maintenance of Genetic Recombination
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A Simulation Study to Examine the Information Content in Phylogenomic Data Sets under the Multispecies Coalescent Model
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Complexity of the simplest species tree problem
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Bayesian Phylogenetic Inference using Relaxed-clocks and the Multispecies Coalescent
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Inference of Gene Flow between Species under Misspecified Models
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Likelihood-Based Tests of Species Tree Hypotheses
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The Impact of Sequencing and Genotyping Errors on Bayesian Analysis of Genomic Data under the Multispecies Coalescent Model
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Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change
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inferred← citeshttps://doi.org/10.1093/molbev/mss118openalex-snapshot
Maximum Likelihood Implementation of an Isolation-with-Migration Model with Three Species for Testing Speciation with Gene Flow
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Coalescent-Based Analyses of Genomic Sequence Data Provide a Robust Resolution of Phylogenetic Relationships among Major Groups of Gibbons
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inferred← citeshttps://doi.org/10.1093/molbev/msy158openalex-snapshot
Coalescent Analysis of Phylogenomic Data Confidently Resolves the Species Relationships in the Anopheles gambiae Species Complex
inferred← citeshttps://doi.org/10.1093/molbev/msz296openalex-snapshot
A Bayesian Implementation of the Multispecies Coalescent Model with Introgression for Phylogenomic Analysis
inferred← citeshttps://doi.org/10.1093/nargab/lqab079openalex-snapshot
Evolutionary and functional lessons from human-specific amino acid substitution matrices
inferred← citeshttps://doi.org/10.1093/nsr/nwab127openalex-snapshot
Multispecies coalescent and its applications to infer species phylogenies and cross-species gene flow
inferred← citeshttps://doi.org/10.1093/sysbio/syaa052openalex-snapshot
Defining Species When There is Gene Flow
inferred← citeshttps://doi.org/10.1093/sysbio/syab047openalex-snapshot
Phase Resolution of Heterozygous Sites in Diploid Genomes is Important to Phylogenomic Analysis under the Multispecies Coalescent Model
inferred← citeshttps://doi.org/10.1093/sysbio/syac077openalex-snapshot
Power of Bayesian and Heuristic Tests to Detect Cross-Species Introgression with Reference to Gene Flow in the Tamias quadrivittatus Group of North American Chipmunks
inferred← citeshttps://doi.org/10.1093/sysbio/syad015openalex-snapshot
Estimation of species divergence times in presence of cross-species gene flow
inferred← citeshttps://doi.org/10.1093/sysbio/syaf019openalex-snapshot
Inference of Cross-Species Gene Flow Using Genomic Data Depends on the Methods: Case Study of Gene Flow in Drosophila
inferred← citeshttps://doi.org/10.1093/sysbio/syq073openalex-snapshot
The Accuracy of Species Tree Estimation under Simulation: A Comparison of Methods
inferred← citeshttps://doi.org/10.1093/sysbio/syr071openalex-snapshot
Evaluation of a Bayesian Coalescent Method of Species Delimitation
inferred← citeshttps://doi.org/10.1093/sysbio/syt059openalex-snapshot
Robustness to Divergence Time Underestimation When Inferring Species Trees from Estimated Gene Trees
inferred← citeshttps://doi.org/10.1093/sysbio/syu020openalex-snapshot
The Impact of the Rate Prior on Bayesian Estimation of Divergence Times with Multiple Loci
inferred← citeshttps://doi.org/10.1093/sysbio/syu052openalex-snapshot
Bayesian Species Delimitation Can Be Robust to Guide-Tree Inference Errors
inferred← citeshttps://doi.org/10.1093/sysbio/syu130openalex-snapshot
Delimiting Species-Poor Data Sets using Single Molecular Markers: A Study of Barcode Gaps, Haplowebs and GMYC
inferred← citeshttps://doi.org/10.1093/sysbio/syv039openalex-snapshot
Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant SpeciesArabidopsis thaliana(L.) Heynh
inferred← citeshttps://doi.org/10.1093/sysbio/syw001openalex-snapshot
Detecting the Anomaly Zone in Species Trees and Evidence for a Misleading Signal in Higher-Level Skink Phylogeny (Squamata: Scincidae).
inferred← citeshttps://doi.org/10.1093/sysbio/syw019openalex-snapshot
Does Gene Tree Discordance Explain the Mismatch between Macroevolutionary Models and Empirical Patterns of Tree Shape and Branching Times?
inferred← citeshttps://doi.org/10.1093/sysbio/syw063openalex-snapshot
Maximum Likelihood Implementation of an Isolation-with-Migration Model for Three Species
inferred← citeshttps://doi.org/10.1093/sysbio/syw119openalex-snapshot
Efficient Bayesian Species Tree Inference under the Multispecies Coalescent
inferred← citeshttps://doi.org/10.1093/sysbio/syy001openalex-snapshot
Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case
inferred← citeshttps://doi.org/10.1093/sysbio/syy011openalex-snapshot
Comparison of Methods for Molecular Species Delimitation Across a Range of Speciation Scenarios
inferred← citeshttps://doi.org/10.1093/sysbio/syy040openalex-snapshot
Modeling Hybridization Under the Network Multispecies Coalescent
inferred← citeshttps://doi.org/10.1093/sysbio/syy051openalex-snapshot
The Spectre of Too Many Species
inferred← citeshttps://doi.org/10.1098/rspb.2012.0705openalex-snapshot
Single-locus species delimitation: a test of the mixed Yule–coalescent model, with an empirical application to Philippine round-leaf bats
inferred← citeshttps://doi.org/10.1098/rstb.2010.0004openalex-snapshot
Divergence, demography and gene loss along the human lineage
inferred← citeshttps://doi.org/10.1101/023937openalex-snapshot
Distribution of gene tree histories under the coalescent model with gene flow
inferred← citeshttps://doi.org/10.1101/110452openalex-snapshot
Large scale variation in the rate of de novo mutation, base composition, divergence and diversity in humans
inferred← citeshttps://doi.org/10.1101/2020.02.28.969089openalex-snapshot
Neglected Quaternary legacy on biodiversity in the Mountains of Southwest China
inferred← citeshttps://doi.org/10.1101/2021.01.12.426362openalex-snapshot
Reticulate Evolutionary History in a Recent Radiation of Montane Grasshoppers Revealed by Genomic Data
inferred← citeshttps://doi.org/10.1101/2021.05.05.442740openalex-snapshot
Factors that affect the rates of adaptive and non-adaptive evolution at the gene level in humans and chimpanzees
inferred← citeshttps://doi.org/10.1101/2021.05.28.446098openalex-snapshot
Site level factors that affect the rate of adaptive evolution in humans and chimpanzees; the effect of contracting population size
inferred← citeshttps://doi.org/10.1101/427583openalex-snapshot
Greater strength of selection and higher proportion of beneficial amino acid changing mutations in humans compared to mice and Drosophila melanogaster
inferred← citeshttps://doi.org/10.1101/555060openalex-snapshot
Viruses rule over adaptation in conserved human proteins
inferred← citeshttps://doi.org/10.1101/724880openalex-snapshot
Pedigree-based measurement of the de novo mutation rate in the gray mouse lemur reveals a high mutation rate, few mutations in CpG sites, and a weak sex bias
inferred← citeshttps://doi.org/10.1101/gr.084228.108openalex-snapshot
Phylogenomics of primates and their ancestral populations
inferred← citeshttps://doi.org/10.1101/gr.099044.109openalex-snapshot
The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important
inferred← citeshttps://doi.org/10.1101/gr.114751.110openalex-snapshot
Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection
inferred← citeshttps://doi.org/10.1101/gr.203950.115openalex-snapshot
In silico phylogenomics using complete genomes: a case study on the evolution of hominoids
inferred← citeshttps://doi.org/10.1101/gr.256636.119openalex-snapshot
Greater strength of selection and higher proportion of beneficial amino acid changing mutations in humans compared with mice and Drosophila melanogaster
inferred← citeshttps://doi.org/10.1111/2041-210x.12356openalex-snapshot
A discrete‐beta model for testing gene flow after speciation
inferred← citeshttps://doi.org/10.1111/evo.13878openalex-snapshot
Process‐based species delimitation leads to identification of more biologically relevant species*
inferred← citeshttps://doi.org/10.1111/j.1095-8312.2012.01862.xopenalex-snapshot
Cytonuclear equilibrium following interspecific introgression in a turtle lacking sex chromosomes
inferred← citeshttps://doi.org/10.1111/j.1558-5646.2008.00560.xopenalex-snapshot
A SELECTION MODEL OF MOLECULAR EVOLUTION INCORPORATING THE EFFECTIVE POPULATION SIZE
inferred← citeshttps://doi.org/10.1111/jav.02559openalex-snapshot
Wintering grounds, population size and evolutionary history of a cryptic passerine species from isotopic and genetic data
inferred← citeshttps://doi.org/10.1111/jbi.12873openalex-snapshot
Asynchronous diversification of snakes in the North American warm deserts
inferred← citeshttps://doi.org/10.1111/jeb.12076openalex-snapshot
The precision of the hominid timescale estimated by relaxed clock methods
inferred← citeshttps://doi.org/10.1111/mec.12599openalex-snapshot
Evolutionary history of P urple cone spruce ( P icea purpurea) in the Q inghai– T ibet P lateau: homoploid hybrid origin and P leistocene expansion
inferred← citeshttps://doi.org/10.1111/mec.14274openalex-snapshot
On the independent gene trees assumption in phylogenomic studies
inferred← citeshttps://doi.org/10.1111/mec.16433openalex-snapshot
A simulation study to examine the impact of recombination on phylogenomic inferences under the multispecies coalescent model
inferred← citeshttps://doi.org/10.1111/nph.12230openalex-snapshot
Multilocus estimation of divergence times and ancestral effective population sizes of O ryza species and implications for the rapid diversification of the genus
inferred← citeshttps://doi.org/10.1126/science.1186802openalex-snapshot
Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing
inferred← citeshttps://doi.org/10.1126/science.1188021openalex-snapshot
A Draft Sequence of the Neandertal Genome
inferred← citeshttps://doi.org/10.1126/science.aag2602openalex-snapshot
Chimpanzee genomic diversity reveals ancient admixture with bonobos
inferred← citeshttps://doi.org/10.1126/science.abn4409openalex-snapshot
Pervasive incomplete lineage sorting illuminates speciation and selection in primates
inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-110617-062431openalex-snapshot
Using Genomic Data to Infer Historic Population Dynamics of Nonmodel Organisms
inferred← citeshttps://doi.org/10.1146/annurev-genet-120213-092532openalex-snapshot
Lineage Sorting in Apes
inferred← citeshttps://doi.org/10.1146/annurev.genom.9.081307.164420openalex-snapshot
Sequencing Primate Genomes: What Have We Learned?
inferred← citeshttps://doi.org/10.1186/1471-2105-10-247openalex-snapshot
Accurate and fast methods to estimate the population mutation rate from error prone sequences
inferred← citeshttps://doi.org/10.1186/1471-2105-15-3openalex-snapshot
Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences
inferred← citeshttps://doi.org/10.1186/1471-2148-11-145openalex-snapshot
Context-dependent codon partition models provide significant increases in model fit in atpB and rbcL protein-coding genes
inferred← citeshttps://doi.org/10.1186/1471-2148-13-232openalex-snapshot
Multilocus phylogeny and cryptic diversity in Asian shrew-like moles (Uropsilus, Talpidae): implications for taxonomy and conservation
inferred← citeshttps://doi.org/10.1186/gb-2010-11-11-r113openalex-snapshot
Genetic diversity in India and the inference of Eurasian population expansion
inferred← citeshttps://doi.org/10.1186/s12862-020-01681-wopenalex-snapshot
Species delimitation in the cyanolichen genus Rostania
inferred← citeshttps://doi.org/10.1371/journal.pbio.1000564openalex-snapshot
Genomic DNA Sequences from Mastodon and Woolly Mammoth Reveal Deep Speciation of Forest and Savanna Elephants
inferred← citeshttps://doi.org/10.1371/journal.pgen.1000729openalex-snapshot
Fine-Scale Phylogenetic Discordance across the House Mouse Genome
inferred← citeshttps://doi.org/10.1371/journal.pgen.1000825openalex-snapshot
Evidence for Pervasive Adaptive Protein Evolution in Wild Mice
inferred← citeshttps://doi.org/10.1371/journal.pgen.1001319openalex-snapshot
Estimating Divergence Time and Ancestral Effective Population Size of Bornean and Sumatran Orangutan Subspecies Using a Coalescent Hidden Markov Model
inferred← citeshttps://doi.org/10.1371/journal.pgen.1002236openalex-snapshot
A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans
inferred← citeshttps://doi.org/10.1371/journal.pgen.1002326openalex-snapshot
Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome
inferred← citeshttps://doi.org/10.1371/journal.pgen.1003125openalex-snapshot
A New Isolation with Migration Model along Complete Genomes Infers Very Different Divergence Processes among Closely Related Great Ape Species
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007254openalex-snapshot
Large scale variation in the rate of germ-line de novo mutation, base composition, divergence and diversity in humans
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007387openalex-snapshot
Human demographic history has amplified the effects of background selection across the genome
inferred← citeshttps://doi.org/10.13918/j.issn.2095-8137.2015.4.223openalex-snapshot
Population genetic studies in the genomic sequencing era.
inferred← citeshttps://doi.org/10.1534/genetics.109.103010openalex-snapshot
Ancestral Population Genomics: The Coalescent Hidden Markov Model Approach
inferred← citeshttps://doi.org/10.1534/genetics.109.110528openalex-snapshot
Estimating Divergence Parameters With Small Samples From a Large Number of Loci
inferred← citeshttps://doi.org/10.1534/genetics.111.134668openalex-snapshot
Rates and Fitness Consequences of New Mutations in Humans
inferred← citeshttps://doi.org/10.1534/genetics.112.149039openalex-snapshot
Improved Reversible Jump Algorithms for Bayesian Species Delimitation
inferred← citeshttps://doi.org/10.1534/genetics.113.154161openalex-snapshot
Factors Influencing Ascertainment Bias of Microsatellite Allele Sizes: Impact on Estimates of Mutation Rates
inferred← citeshttps://doi.org/10.1534/genetics.113.157776openalex-snapshot
Robust Estimates of Divergence Times and Selection with a Poisson Random Field Model: A Case Study of Comparative Phylogeographic Data
inferred← citeshttps://doi.org/10.1534/genetics.116.190173openalex-snapshot
Challenges in Species Tree Estimation Under the Multispecies Coalescent Model
inferred← citeshttps://doi.org/10.48550/arxiv.1306.5110openalex-snapshot
Genome-wide inference of ancestral recombination graphs
inferred← citeshttps://doi.org/10.48550/arxiv.1511.05478openalex-snapshot
A fast method to estimate speciation parameters in a model of isolation with an initial period of gene flow and to test alternative evolutionary scenarios
inferred← citeshttps://doi.org/10.48550/arxiv.1512.03843openalex-snapshot
Efficient Bayesian species tree inference under the multi-species coalescent
inferred← citeshttps://doi.org/10.6084/m9.figshare.12940834openalex-snapshot
Additional file 2 of Species delimitation in the cyanolichen genus Rostania
inferred← citeshttps://doi.org/10.70675/71df7c48zc1edz4fdcza8f5z0022a3b99c52openalex-snapshot
Gene flow - dependent introgression and species delimitation : evidence from mtDNA & cpDNA variation in spruce
inferred← citeshttps://doi.org/10.7282/t3w959ctopenalex-snapshot
Estimating the process of speciation for humans and chimpanzees
inferred← citeshttps://doi.org/10.7554/elife.90656openalex-snapshot
Major patterns in the introgression history of Heliconius butterflies
inferred← citeshttps://doi.org/10.7554/elife.90656.2openalex-snapshot
Major patterns in the introgression history of Heliconius butterflies
inferred← citeshttps://doi.org/10.7554/elife.90656.3openalex-snapshot
Major patterns in the introgression history of Heliconius butterflies
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