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The evolution of spliceosomal introns: patterns, puzzles and progress
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/j.1460-2075.1989.tb03609.xopenalex-snapshot
Evidence that introns arose at proto‐splice sites.
inferredcites →https://doi.org/10.1007/978-94-010-0229-5_14openalex-snapshot
Recent evidence for the Exon Theory of Genes
inferredcites →https://doi.org/10.1007/978-94-010-0229-5_2openalex-snapshot
The emergence of a synthetic theory of intron evolution
inferredcites →https://doi.org/10.1007/978-94-010-0229-5_3openalex-snapshot
Introns in gene evolution
inferredcites →https://doi.org/10.1007/pl00006180openalex-snapshot
Intron Distribution in Ancient Paralogs Supports Random Insertion and Not Random Loss
inferredcites →https://doi.org/10.1007/pl00006540openalex-snapshot
On the Possibility of Constructive Neutral Evolution
inferredcites →https://doi.org/10.1007/s001220050861openalex-snapshot
Evolutionary relationship of plant catalase genes inferred from exon-intron structures: isozyme divergence after the separation of monocots and dicots
inferredcites →https://doi.org/10.1007/s001220051144openalex-snapshot
p-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species
inferredcites →https://doi.org/10.1007/s00239-001-0024-yopenalex-snapshot
Dynamic Insertion–Deletion of Introns in Deuterostome EF-1α Genes
inferredcites →https://doi.org/10.1007/s00239-004-0032-9openalex-snapshot
Can Codon Usage Bias Explain Intron Phase Distributions and Exon Symmetry?
inferredcites →https://doi.org/10.1007/s00239-004-2636-5openalex-snapshot
Hypervariable and Highly Divergent Intron?Exon Organizations in the Chordate Oikopleura dioica
inferredcites →https://doi.org/10.1016/0014-5793(90)81282-sopenalex-snapshot
The role of introns in evolution
inferredcites →https://doi.org/10.1016/0065-227x(96)84742-3openalex-snapshot
Origin and early evolution of eukaryotes inferred from the amino acid sequences of translation elongation factors 1?/Tu and 2/G
inferredcites →https://doi.org/10.1016/0092-8674(79)90075-8openalex-snapshot
The dna sequence of bombyx mori fibroin gene including the 5′ flanking, mRNA coding, entire intervening and fibroin protein coding regions
inferredcites →https://doi.org/10.1016/0092-8674(80)90641-8openalex-snapshot
The evolution of genes: the chicken preproinsulin gene
inferredcites →https://doi.org/10.1016/0092-8674(83)90466-xopenalex-snapshot
Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites
inferredcites →https://doi.org/10.1016/0092-8674(85)90092-3openalex-snapshot
On the origin of RNA splicing and introns
inferredcites →https://doi.org/10.1016/0092-8674(86)90751-8openalex-snapshot
The generality of self-splicing RNA: Relationship to nuclear mRNA splicing
inferredcites →https://doi.org/10.1016/0168-9525(89)90084-xopenalex-snapshot
How were introns inserted into nuclear genes?
inferredcites →https://doi.org/10.1016/0168-9525(91)90102-vopenalex-snapshot
Intron phylogeny: a new hypothesis
inferredcites →https://doi.org/10.1016/j.cub.2004.02.063openalex-snapshot
Exon Junction Sequences as Cryptic Splice Sites
inferredcites →https://doi.org/10.1016/j.cub.2004.04.024openalex-snapshot
Molecular Evolution: Introns Fall into Place
inferredcites →https://doi.org/10.1016/j.cub.2004.08.027openalex-snapshot
Reconstruction of Ancestral Protosplice Sites
inferredcites →https://doi.org/10.1016/j.febslet.2004.03.088openalex-snapshot
Evidence that human genes of modular proteins have retained significantly more ancestral introns than their fly or worm orthologues
inferredcites →https://doi.org/10.1016/j.febslet.2004.08.045openalex-snapshot
Insertion of spliceosomal introns in proto‐splice sites: the case of secretory signal peptides
inferredcites →https://doi.org/10.1016/j.gene.2004.05.027openalex-snapshot
Preferential loss and gain of introns in 3′ portions of genes suggests a reverse-transcription mechanism of intron insertion
inferredcites →https://doi.org/10.1016/s0022-5193(05)80388-1openalex-snapshot
Proto-splice site model of intron origin
inferredcites →https://doi.org/10.1016/s0092-8674(01)00584-0openalex-snapshot
Reconstructing/Deconstructing the Earliest Eukaryotes
inferredcites →https://doi.org/10.1016/s0166-6851(98)00064-4openalex-snapshot
A small spliceosomal-type intron occurs in a ribosomal protein gene of the microsporidian Encephalitozoon cuniculi1Note: Nucleotide sequence data reported in this paper are available in the EMBL, GenBankTM and DDJB data bases under the accession number AF054829.1
inferredcites →https://doi.org/10.1016/s0166-6851(99)00017-1openalex-snapshot
Trichomonas vaginalis possesses a gene encoding the essential spliceosomal component, PRP8
inferredcites →https://doi.org/10.1016/s0166-6851(99)00091-2openalex-snapshot
Characterization of a SR protein from Trypanosoma brucei with homology to RNA-binding cis-splicing proteins
inferredcites →https://doi.org/10.1016/s0167-4781(00)00009-9openalex-snapshot
Structural conservation and variation among U5 small nuclear RNAs from trypanosomatid protozoa
inferredcites →https://doi.org/10.1016/s0168-9525(01)02236-3openalex-snapshot
Why do genes have introns? Recombination might add a new piece to the puzzle
inferredcites →https://doi.org/10.1016/s0168-9525(01)02324-1openalex-snapshot
The ins and outs of group II introns
inferredcites →https://doi.org/10.1016/s0168-9525(01)02375-7openalex-snapshot
Footprints of primordial introns on the eukaryotic genome
inferredcites →https://doi.org/10.1016/s0168-9525(01)02376-9openalex-snapshot
Footprints of primordial introns on the eukaryotic genome: still no clear traces
inferredcites →https://doi.org/10.1016/s0378-1119(02)01035-1openalex-snapshot
On biased distribution of introns in various eukaryotes
inferredcites →https://doi.org/10.1016/s0378-1119(97)00518-0openalex-snapshot
A variable intron distribution in globin genes of Chironomus: evidence for recent intron gain
inferredcites →https://doi.org/10.1016/s0378-1119(99)00228-0openalex-snapshot
Genome evolution and the evolution of exon-shuffling — a review
inferredcites →https://doi.org/10.1016/s0378-1119(99)00292-9openalex-snapshot
Centripetal modules and ancient introns
inferredcites →https://doi.org/10.1016/s0959-437x(05)80192-3openalex-snapshot
Early evolution and the origin of eukaryotes
inferredcites →https://doi.org/10.1016/s0959-437x(05)80194-7openalex-snapshot
The recent origins of introns
inferredcites →https://doi.org/10.1016/s0959-437x(98)80029-4openalex-snapshot
Early branching eukaryotes?
inferredcites →https://doi.org/10.1016/s0959-437x(98)80031-2openalex-snapshot
The recent origins of spliceosomal introns revisited
inferredcites →https://doi.org/10.1016/s0960-9822(02)01207-1openalex-snapshot
Eukaryotic Evolution: Getting to the Root of the Problem
inferredcites →https://doi.org/10.1016/s0960-9822(03)00558-xopenalex-snapshot
Remarkable Interkingdom Conservation of Intron Positions and Massive, Lineage-Specific Intron Loss and Gain in Eukaryotic Evolution
inferredcites →https://doi.org/10.1016/s0960-9822(07)00361-2openalex-snapshot
Molecular evolution: Recent cases of spliceosomal intron gain?
inferredcites →https://doi.org/10.1023/a:1024182432483openalex-snapshot
Modular Assembly of Genes and the Evolution of New Functions
inferredcites →https://doi.org/10.1023/a:1024190617462openalex-snapshot
Recent Evidence for the Exon Theory of Genes
inferredcites →https://doi.org/10.1023/a:1024193323397openalex-snapshot
The Emergence of a Synthetic Theory of Intron Evolution
inferredcites →https://doi.org/10.1038/272581a0openalex-snapshot
Genes in pieces: were they ever together?
inferredcites →https://doi.org/10.1038/273267a0openalex-snapshot
Do genes-in-pieces imply proteins-in-pieces?
inferredcites →https://doi.org/10.1038/284601a0openalex-snapshot
Selfish genes, the phenotype paradigm and genome evolution
inferredcites →https://doi.org/10.1038/291090a0openalex-snapshot
Correlation of DNA exonic regions with protein structural units in haemoglobin
inferredcites →https://doi.org/10.1038/313498a0openalex-snapshot
Intron-dependent evolution of chicken glyceraldehyde phosphate dehydrogenase gene
inferredcites →https://doi.org/10.1038/315283b0openalex-snapshot
Selfish DNA and the origin of introns
inferredcites →https://doi.org/10.1038/ng940openalex-snapshot
Selection for short introns in highly expressed genes
inferredcites →https://doi.org/10.1073/pnas.0308192101openalex-snapshot
Origins of recently gained introns in Caenorhabditis
inferredcites →https://doi.org/10.1073/pnas.0403094101openalex-snapshot
Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss
inferredcites →https://doi.org/10.1073/pnas.0407500102openalex-snapshot
Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis
inferredcites →https://doi.org/10.1073/pnas.042700299openalex-snapshot
A spliceosomal intron in Giardia lamblia
inferredcites →https://doi.org/10.1073/pnas.0500383102openalex-snapshot
Rates of intron loss and gain: Implications for early eukaryotic evolution
inferredcites →https://doi.org/10.1073/pnas.0731952100openalex-snapshot
A new Drosophila spliceosomal intron position is common in plants
inferredcites →https://doi.org/10.1073/pnas.092595699openalex-snapshot
Intron evolution as a population-genetic process
inferredcites →https://doi.org/10.1073/pnas.122570299openalex-snapshot
Intron presence–absence polymorphism in Drosophila driven by positive Darwinian selection
inferredcites →https://doi.org/10.1073/pnas.1232297100openalex-snapshot
Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain
inferredcites →https://doi.org/10.1073/pnas.231491498openalex-snapshot
Intron distribution difference for 276 ancient and 131 modern genes suggests the existence of ancient introns
inferredcites →https://doi.org/10.1073/pnas.242600199openalex-snapshot
The signal of ancient introns is obscured by intron density and homolog number
inferredcites →https://doi.org/10.1073/pnas.242624899openalex-snapshot
Large-scale comparison of intron positions among animal, plant, and fungal genes
inferredcites →https://doi.org/10.1073/pnas.75.3.1485openalex-snapshot
Sequence of a mouse germ-line gene for a variable region of an immunoglobulin light chain.
inferredcites →https://doi.org/10.1073/pnas.91.25.12150openalex-snapshot
De novo synthesis of an intron by the maize transposable element Dissociation.
inferredcites →https://doi.org/10.1073/pnas.92.18.8503openalex-snapshot
Evidence against the exon theory of genes derived from the triose-phosphate isomerase gene.
inferredcites →https://doi.org/10.1073/pnas.92.18.8507openalex-snapshot
Seven newly discovered intron positions in the triose-phosphate isomerase gene: evidence for the introns-late theory.
inferredcites →https://doi.org/10.1073/pnas.92.26.12495openalex-snapshot
Intron phase correlations and the evolution of the intron/exon structure of genes.
inferredcites →https://doi.org/10.1073/pnas.93.25.14632openalex-snapshot
Intron positions correlate with module boundaries in ancient proteins
inferredcites →https://doi.org/10.1073/pnas.94.13.6820openalex-snapshot
Exon/intron structure of aldehyde dehydrogenase genes supports the “ introns-late ” theory
inferredcites →https://doi.org/10.1073/pnas.95.1.219openalex-snapshot
Relationship between “proto-splice sites” and intron phases: Evidence from dicodon analysis
inferredcites →https://doi.org/10.1073/pnas.95.20.11769openalex-snapshot
Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II
inferredcites →https://doi.org/10.1073/pnas.95.9.5094openalex-snapshot
Toward a resolution of the introns early/late debate: Only phase zero introns are correlated with the structure of ancient proteins
inferredcites →https://doi.org/10.1073/pnas.96.3.852openalex-snapshot
U1 small nuclear RNA and spliceosomal introns in Euglena gracilis
inferredcites →https://doi.org/10.1086/406830openalex-snapshot
Repetitive and Non-Repetitive DNA Sequences and a Speculation on the Origins of Evolutionary Novelty
inferredcites →https://doi.org/10.1089/10445490050021221openalex-snapshot
Intron–Exon Organization and Phylogeny in a Large Superfamily, the Paralogous Cytochrome P450 Genes of Arabidopsis thaliana
inferredcites →https://doi.org/10.1093/bib/6.2.118openalex-snapshot
Analysis of evolution of exon-intron structure of eukaryotic genes
inferredcites →https://doi.org/10.1093/genetics/148.3.937openalex-snapshot
The Involvement of Cellular Recombination and Repair Genes in RNA-Mediated Recombination in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1093/genetics/149.1.355openalex-snapshot
Intron Loss and Gain During Evolution of the Catalase Gene Family in Angiosperms
inferredcites →https://doi.org/10.1093/genetics/156.3.1175openalex-snapshot
The Correlation Between Intron Length and Recombination in Drosophila: Dynamic Equilibrium Between Mutational and Selective Forces
inferredcites →https://doi.org/10.1093/molbev/msg068openalex-snapshot
Messenger RNA Surveillance and the Evolutionary Proliferation of Introns
inferredcites →https://doi.org/10.1093/molbev/msh120openalex-snapshot
The Evolutionary Gain of Spliceosomal Introns: Sequence and Phase Preferences
inferredcites →https://doi.org/10.1093/molbev/msi091openalex-snapshot
Complex Spliceosomal Organization Ancestral to Extant Eukaryotes
inferredcites →https://doi.org/10.1093/nar/26.13.3202openalex-snapshot
U2 and U6 snRNA genes in the microsporidian Nosema locustae: evidence for a functional spliceosome
inferredcites →https://doi.org/10.1093/nar/30.7.1427openalex-snapshot
Comparative genomics and evolution of proteins involved in RNA metabolism
inferredcites →https://doi.org/10.1093/nar/gkh686openalex-snapshot
Prevalence of intron gain over intron loss in the evolution of paralogous gene families
inferredcites →https://doi.org/10.1093/nar/gki316openalex-snapshot
Conservation versus parallel gains in intron evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003830openalex-snapshot
Evolutionary Relationships Among “Jakobid” Flagellates as Indicated by Alpha- and Beta-Tubulin Phylogenies
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004091openalex-snapshot
Frequent Intron Loss in the White Gene: A Cautionary Tale for Phylogeneticists
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004097openalex-snapshot
The Chaperonin Genes of Jakobid and Jakobid-Like Flagellates: Implications for Eukaryotic Evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026279openalex-snapshot
Testing the “Proto-splice Sites” Model of Intron Origin: Evidence from Analysis of Intron Phase Correlations
inferredcites →https://doi.org/10.1101/gr.10.8.1115openalex-snapshot
Conservation, Regulation, Synteny, and Introns in a Large-scale C. briggsae–C. elegans Genomic Alignment
inferredcites →https://doi.org/10.1101/gr.1008203openalex-snapshot
Phylogenetically Older Introns Strongly Correlate With Module Boundaries in Ancient Proteins
inferredcites →https://doi.org/10.1101/gr.2639304openalex-snapshot
A Phylogeny of Caenorhabditis Reveals Frequent Loss of Introns During Nematode Evolution
inferredcites →https://doi.org/10.1101/gr.8.5.449openalex-snapshot
Two Large Families of Chemoreceptor Genes in the NematodesCaenorhabditis elegans and Caenorhabditis briggsae Reveal Extensive Gene Duplication, Diversification, Movement, and Intron Loss
inferredcites →https://doi.org/10.1111/j.1432-1033.1978.tb12061.xopenalex-snapshot
Chromosome Structure and Function. Future Prospects
inferredcites →https://doi.org/10.1126/science.1089370openalex-snapshot
The Origins of Genome Complexity
inferredcites →https://doi.org/10.1126/science.1102033openalex-snapshot
Very Low Gene Duplication Rate in the Yeast Genome
inferredcites →https://doi.org/10.1126/science.165.3891.349openalex-snapshot
Gene Regulation for Higher Cells: A Theory
inferredcites →https://doi.org/10.1126/science.294.5551.2506openalex-snapshot
Miniature Genome in the Marine Chordate Oikopleura dioica
inferredcites →https://doi.org/10.1126/science.6186029openalex-snapshot
How Mammalian RNA Returns to Its Genome
inferredcites →https://doi.org/10.1126/science.7682012openalex-snapshot
Natural Selection and the Origin of jingwei , a Chimeric Processed Functional Gene in Drosophila
inferredcites →https://doi.org/10.1126/science.8023140openalex-snapshot
Testing the Exon Theory of Genes: The Evidence from Protein Structure
inferredcites →https://doi.org/10.1128/mcb.5.12.3497openalex-snapshot
Genetic Engineering in the Precambrian: Structure of the Chicken Triosephosphate Isomerase Gene
inferredcites →https://doi.org/10.1146/annurev.bi.55.070186.003215openalex-snapshot
NONVIRAL RETROPOSONS: GENES, PSEUDOGENES, AND TRANSPOSABLE ELEMENTS GENERATED BY THE REVERSE FLOW OF GENETIC INFORMATION
inferredcites →https://doi.org/10.1146/annurev.genet.38.072902.091600openalex-snapshot
Mobile Group II Introns
inferredcites →https://doi.org/10.1186/1471-2105-3-2openalex-snapshot
The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
inferredcites →https://doi.org/10.1186/gb-2002-3-10-research0057openalex-snapshot
Conservation of long-range synteny and microsynteny between the genomes of two distantly related nematodes
inferredcites →https://doi.org/10.1186/gb-2004-5-12-251openalex-snapshot
The origin of recent introns: transposons?
inferredcites →https://doi.org/10.1371/journal.pbio.0020422openalex-snapshot
Patterns of Intron Gain and Loss in Fungi
inferredcites →https://doi.org/10.1534/genetics.104.037689openalex-snapshot
Insertion/Deletion and Nucleotide Polymorphism Data Reveal Constraints in Drosophila melanogaster Introns and Intergenic Regions
inferredcites →https://doi.org/10.1534/genetics.166.3.1585openalex-snapshot
Intron Size Correlates Positively With Recombination Rate in Caenorhabditis elegans
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Intron retention in mRNA: No longer nonsense
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Genome streamlining via complete loss of introns has occurred multiple times in lichenized fungal mitochondria
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Exchange of Genetic Sequences Between Viruses and Hosts
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The Last Universal Common Ancestor of Ribosome-Encoding Organisms: Portrait of LUCA
inferred← citeshttps://doi.org/10.1007/s00239-025-10242-yopenalex-snapshot
De Novo Creation of Two Novel Spliceosomal Introns of RECG1 by Intronization of Formerly Exonic Sequences in Orchidaceae
inferred← citeshttps://doi.org/10.1007/s00294-017-0802-8openalex-snapshot
Intron specificity in pre-mRNA splicing
inferred← citeshttps://doi.org/10.1007/s00294-018-0906-9openalex-snapshot
Co-evolution of spliceosomal disassembly interologs: crowning J-protein component with moonlighting RNA-binding activity
inferred← citeshttps://doi.org/10.1007/s00294-019-00960-4openalex-snapshot
Intron-mediated regulation of β-tubulin genes expression affects the sensitivity to carbendazim in Fusarium graminearum
inferred← citeshttps://doi.org/10.1007/s00299-025-03692-7openalex-snapshot
Genome-wide identification of NF-Y family in Carya illinoinensis and CiNF-YC6 role in fatty acid biosynthesis
inferred← citeshttps://doi.org/10.1007/s00344-020-10201-5openalex-snapshot
The GATA Gene Family in Chickpea: Structure Analysis and Transcriptional Responses to Abscisic Acid and Dehydration Treatments Revealed Potential Genes Involved in Drought Adaptation
inferred← citeshttps://doi.org/10.1007/s00344-022-10746-7openalex-snapshot
Comparative Genomic Analysis of GARP Transcription Factor Family in Legumes and Identification of Stress-Responsive Candidate Genes
inferred← citeshttps://doi.org/10.1007/s00344-022-10885-xopenalex-snapshot
Filamentation Temperature-Sensitive (FtsH); Key Player in Response to Multiple Environmental Stress Conditions and Developmental Stages in Potato
inferred← citeshttps://doi.org/10.1007/s00344-026-12246-4openalex-snapshot
Genome-Wide Identification and Functional Characterization of the C2 Gene Family in Populus deltoides: A PdeC2-38/57/65 Complex Mediates Osmotic Stress Response via Ca2+ Signaling
inferred← citeshttps://doi.org/10.1007/s00425-021-03727-9openalex-snapshot
Identification of BR biosynthesis genes in cotton reveals that GhCPD-3 restores BR biosynthesis and mediates plant growth and development
inferred← citeshttps://doi.org/10.1007/s00425-021-03782-2openalex-snapshot
Identification, evolutionary analysis and functional diversification of RAV gene family in cotton (G. hirsutum L.)
inferred← citeshttps://doi.org/10.1007/s00427-015-0515-2openalex-snapshot
Unraveling the evolution and regulation of the alternative oxidase gene family in plants
inferred← citeshttps://doi.org/10.1007/s00436-009-1668-6openalex-snapshot
Evolutionary genetic insights into Plasmodium falciparum functional genes
inferred← citeshttps://doi.org/10.1007/s00468-019-01917-3openalex-snapshot
Genome-wide analysis of the poplar NF-Y gene family and its expression in floral bud development of Populus tomentosa
inferred← citeshttps://doi.org/10.1007/s10142-007-0065-4openalex-snapshot
The PIP and TIP aquaporins in wheat form a large and diverse family with unique gene structures and functionally important features
inferred← citeshttps://doi.org/10.1007/s10142-023-00966-9openalex-snapshot
Genome-wide identification, evolution, and expression analysis of carbonic anhydrases genes in soybean (Glycine max)
inferred← citeshttps://doi.org/10.1007/s10142-026-01853-9openalex-snapshot
Genome-wide identification and evolution of the RCP gene family in soybean uncovers stress-responsive candidates
inferred← citeshttps://doi.org/10.1007/s10343-025-01262-1openalex-snapshot
Genome-Wide Analysis and Stress-Responsive Expression of Eceriferum (CER) Genes in Strawberry (Fragaria vesca)
inferred← citeshttps://doi.org/10.1007/s10709-026-00279-2openalex-snapshot
Genome-wide identification and expression analysis of the pectate lyase (PEL) gene family in soybean (Glycine max (L.) Merr. )
inferred← citeshttps://doi.org/10.1007/s10722-024-01886-8openalex-snapshot
Genome-wide identification and analysis of the growth-regulating factor (GRF) family in sweet cherry
inferred← citeshttps://doi.org/10.1007/s10722-024-02031-1openalex-snapshot
In silico analysis of Phaseolus vulgaris L. metalloprotease FtsH gene: characterization and expression in drought and salt stress
inferred← citeshttps://doi.org/10.1007/s10722-025-02559-wopenalex-snapshot
A genome-wide approach to the comprehensive analysis of the serine carboxypeptidase-like protein family in Solanum lysopersicum L.
inferred← citeshttps://doi.org/10.1007/s10725-024-01244-9openalex-snapshot
Genome-wide identification and genetic characterization of HKT potassium transporters and their response to abiotic stress in barley
inferred← citeshttps://doi.org/10.1007/s11033-009-9557-8openalex-snapshot
Genome-wide analysis of recombination machinery for spliceosomal introns gain
inferred← citeshttps://doi.org/10.1007/s11033-014-3797-yopenalex-snapshot
Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.)
inferred← citeshttps://doi.org/10.1007/s11105-011-0345-yopenalex-snapshot
Determination S-Genotypes and Identification of Five Novel S-RNase Alleles in Wild Malus Species
inferred← citeshttps://doi.org/10.1007/s11240-024-02921-3openalex-snapshot
Identification of the EXORDIUM gene family and functional analysis of VaEXO2a during cold stress response in Vitis amurensis
inferred← citeshttps://doi.org/10.1007/s11295-023-01637-3openalex-snapshot
Insights into the evolution of the eucalypt CER1 and CER3 genes involved in the synthesis of alkane waxes
inferred← citeshttps://doi.org/10.1007/s11302-007-9064-0openalex-snapshot
Structural and functional evolution of the P2Y12-like receptor group
inferred← citeshttps://doi.org/10.1007/s11427-018-9412-xopenalex-snapshot
Genome-wide analysis of BES1 genes in Gossypium revealed their evolutionary conserved roles in brassinosteroid signaling
inferred← citeshttps://doi.org/10.1007/s12035-010-8136-2openalex-snapshot
Human Embryonic Stem Cell-Derived Neurons as a Tool for Studying Neuroprotection and Neurodegeneration
inferred← citeshttps://doi.org/10.1007/s12041-016-0629-yopenalex-snapshot
Hsp27 gene in Drosophila ananassae subgroup was split by a recently acquired intron
inferred← citeshttps://doi.org/10.1007/s12064-012-0173-0openalex-snapshot
Analysis of phylogenetic signal in protostomial intron patterns using Mutual Information
inferred← citeshttps://doi.org/10.1007/s12298-016-0349-zopenalex-snapshot
Genome- wide characterization of Nuclear Factor Y (NF-Y) gene family of sorghum [Sorghum bicolor (L.) Moench]: a bioinformatics approach
inferred← citeshttps://doi.org/10.1007/s12298-025-01561-xopenalex-snapshot
Comprehensive in-silico characterization and expression pattern of calmodulin genes under various abiotic and biotic stresses in Indian mustard (Brassica juncea)
inferred← citeshttps://doi.org/10.1007/s13205-021-02805-9openalex-snapshot
Genome-wide identification, characterization and expression profiles of the CCD gene family in Gossypium species
inferred← citeshttps://doi.org/10.1007/s13205-023-03782-xopenalex-snapshot
Genome-wide identification and characterization of GRAS gene family in pigeonpea (Cajanus cajan (L.) Millspaugh)
inferred← citeshttps://doi.org/10.1007/s13205-026-05044-yopenalex-snapshot
Genome-wide characterization of the tomato PERK gene family and its expression profiling under abiotic stresses
inferred← citeshttps://doi.org/10.1007/s13258-010-0076-8openalex-snapshot
Intron loss mediated structural dynamics and functional differentiation of the polygalacturonase gene family in land plants
inferred← citeshttps://doi.org/10.1007/s13258-019-00810-0openalex-snapshot
Identification and expression analysis of ERECTA family genes in grape (Vitis vinifera L.)
inferred← citeshttps://doi.org/10.1007/s13258-022-01324-yopenalex-snapshot
Genome-wide identification and expression analysis of the aquaporin gene family reveals the role in the salinity adaptability in Nile tilapia (Oreochromis niloticus)
inferred← citeshttps://doi.org/10.1007/s13277-014-2197-1openalex-snapshot
The association of phosphatase and tensin homolog deleted on chromosome 10 polymorphisms and lifestyle habits with colorectal cancer risk in a Chinese population
inferred← citeshttps://doi.org/10.1007/s13562-015-0319-5openalex-snapshot
Intron gain, a dominant evolutionary process supporting high levels of gene expression in rice
inferred← citeshttps://doi.org/10.1007/s42976-024-00507-5openalex-snapshot
In silico analysis and designing gRNA constructs for the precise modification of the OsTMS5 gene in rice (Oryza sativa L.): a comprehensive study and construct development for crop improvement
inferred← citeshttps://doi.org/10.1016/b978-0-12-381286-5.00006-8openalex-snapshot
The Role of snRNAs in Spliceosomal Catalysis
inferred← citeshttps://doi.org/10.1016/b978-0-12-804036-2.00014-5openalex-snapshot
Hormones and Development
inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.20228-8openalex-snapshot
Bioinformatics Approaches for Studying Alternative Splicing
inferred← citeshttps://doi.org/10.1016/b978-1-4160-2911-3.50005-4openalex-snapshot
10.1016/b978-1-4160-2911-3.50005-4
inferred← citeshttps://doi.org/10.1016/b978-1-4377-0324-5.00003-1openalex-snapshot
Genetic Control of Peptide Hormone Formation
inferred← citeshttps://doi.org/10.1016/j.aqrep.2022.101080openalex-snapshot
Identification and characterization of type I and II IFN genes in obscure puffer (Takifugu obscurus)
inferred← citeshttps://doi.org/10.1016/j.bbamem.2011.10.005openalex-snapshot
VDAC isoforms in mammals
inferred← citeshttps://doi.org/10.1016/j.bbrc.2006.12.184openalex-snapshot
Relationship between mRNA stability and intron presence
inferred← citeshttps://doi.org/10.1016/j.bbrc.2012.06.092openalex-snapshot
Human intronless genes: Functional groups, associated diseases, evolution, and mRNA processing in absence of splicing
inferred← citeshttps://doi.org/10.1016/j.bbrc.2013.09.134openalex-snapshot
Sequence, phylogenetic and variant analyses of antithrombin III
inferred← citeshttps://doi.org/10.1016/j.bbrc.2014.02.139openalex-snapshot
Revising angiotensinogen from phylogenetic and genetic variants perspectives
inferred← citeshttps://doi.org/10.1016/j.bbrc.2014.05.097openalex-snapshot
Molecular phylogeny of C1 inhibitor depicts two immunoglobulin-like domains fusion in fishes and ray-finned fishes specific intron insertion after separation from zebrafish
inferred← citeshttps://doi.org/10.1016/j.bbrc.2014.10.105openalex-snapshot
Surveying genetic variants and molecular phylogeny of cerebral cavernous malformation gene, CCM3/PDCD10
inferred← citeshttps://doi.org/10.1016/j.biocel.2008.09.014openalex-snapshot
A 25-bp ancient spliceosomal intron in the TvRab1a gene of Trichomonas vaginalis
inferred← citeshttps://doi.org/10.1016/j.biocel.2008.09.015openalex-snapshot
Evolution of genome architecture
inferred← citeshttps://doi.org/10.1016/j.biocel.2017.06.017openalex-snapshot
From intronization to intron loss: How the interplay between mRNA-associated processes can shape the architecture and the expression of eukaryotic genes
inferred← citeshttps://doi.org/10.1016/j.cbd.2025.101661openalex-snapshot
Genome-wide characterization of the Hsp40 gene family in Clarias fuscus reveals their roles in thermal stress adaptation and immune modulation
inferred← citeshttps://doi.org/10.1016/j.cbpb.2012.10.004openalex-snapshot
White shrimp Litopenaeus vannamei catalase: Gene structure, expression and activity under hypoxia and reoxygenation
inferred← citeshttps://doi.org/10.1016/j.ccell.2016.08.006openalex-snapshot
Physiologic Expression of Sf3b1 K700E Causes Impaired Erythropoiesis, Aberrant Splicing, and Sensitivity to Therapeutic Spliceosome Modulation
inferred← citeshttps://doi.org/10.1016/j.cell.2026.05.033openalex-snapshot
A spliceosome-independent eukaryote generated by complete intron removal
inferred← citeshttps://doi.org/10.1016/j.celrep.2012.03.013openalex-snapshot
Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition
inferred← citeshttps://doi.org/10.1016/j.celrep.2026.117696openalex-snapshot
A genome-wide functional analysis of conserved intronic regions reveals essential roles for speckle-associated retained introns
inferred← citeshttps://doi.org/10.1016/j.celrep.2026.117838openalex-snapshot
PKR engages viral RNA and intron-retained host transcripts during poxvirus infection
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2012.01.002openalex-snapshot
Identical sequence patterns in the ends of exons and introns of human protein-coding genes
inferred← citeshttps://doi.org/10.1016/j.cub.2008.04.054openalex-snapshot
Widespread recycling of processed cDNAs in dinoflagellates
inferred← citeshttps://doi.org/10.1016/j.cub.2010.09.038openalex-snapshot
A spliceosomal intron of mitochondrial DNA origin
inferred← citeshttps://doi.org/10.1016/j.cub.2011.10.041openalex-snapshot
Evidence for Extensive Recent Intron Transposition in Closely Related Fungi
inferred← citeshttps://doi.org/10.1016/j.cub.2022.11.046openalex-snapshot
Intron-rich dinoflagellate genomes driven by Introner transposable elements of unprecedented diversity
inferred← citeshttps://doi.org/10.1016/j.devcel.2008.02.002openalex-snapshot
Intron Delays and Transcriptional Timing during Development
inferred← citeshttps://doi.org/10.1016/j.devcel.2016.10.012openalex-snapshot
High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA Regulation
inferred← citeshttps://doi.org/10.1016/j.febslet.2010.11.005openalex-snapshot
Phylogenetic analysis and evolution of aromatic amino acid hydroxylase
inferred← citeshttps://doi.org/10.1016/j.fgb.2015.10.004openalex-snapshot
Alternatively spliced, spliceosomal twin introns in Helminthosporium solani
inferred← citeshttps://doi.org/10.1016/j.foodchem.2019.05.096openalex-snapshot
Sequence diversity and in silico structure prediction of the vacuolar invertase inhibitor gene from potato (Solanum tuberosum L.) cultivars differing in sugar content
inferred← citeshttps://doi.org/10.1016/j.fsi.2013.07.031openalex-snapshot
Differences in gene organization between type I and type II crustins in the morotoge shrimp, Pandalopsis japonica
inferred← citeshttps://doi.org/10.1016/j.fsi.2021.05.015openalex-snapshot
The evolutionary puzzle solution for the origins of the partial loss of the Cτ2 exon in notothenioid fishes
inferred← citeshttps://doi.org/10.1016/j.gene.2007.02.011openalex-snapshot
Intron distribution in Plantae: 500 million years of stasis during land plant evolution
inferred← citeshttps://doi.org/10.1016/j.gene.2009.09.002openalex-snapshot
Unique genome of dicyemid mesozoan: Highly shortened spliceosomal introns in conservative exon/intron structure
inferred← citeshttps://doi.org/10.1016/j.gene.2012.06.007openalex-snapshot
Variable intron/exon structure in the oligochaete lombricine kinase gene
inferred← citeshttps://doi.org/10.1016/j.gene.2012.09.077openalex-snapshot
Intergenic region between TATA-box binding protein and proteasome subunit C3 genes of Medaka function as the bidirectional promoter in vitro and in vivo
inferred← citeshttps://doi.org/10.1016/j.gene.2013.09.083openalex-snapshot
The evolutionary analysis reveals domain fusion of proteins with Frizzled-like CRD domain
inferred← citeshttps://doi.org/10.1016/j.gene.2014.02.006openalex-snapshot
Comparative genomic analysis of the Sm gene family in rice and maize
inferred← citeshttps://doi.org/10.1016/j.gene.2018.04.016openalex-snapshot
Comparative and evolutionary analysis of the 14-3-3 family genes in eleven fishes
inferred← citeshttps://doi.org/10.1016/j.gene.2020.144725openalex-snapshot
Identification and expression analysis of the small auxin-up RNA (SAUR) gene family in apple by inducing of auxin
inferred← citeshttps://doi.org/10.1016/j.gene.2021.146089openalex-snapshot
Genome-wide screening and identification of nuclear Factor-Y family genes and exploration their function on regulating abiotic and biotic stress in potato (Solanum tuberosum L.)
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2021.09.042openalex-snapshot
Genome-wide analysis of the MYB-related transcription factor family and associated responses to abiotic stressors in Populus
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2021.10.079openalex-snapshot
Genome-wide characterization and expression analysis of cystathionine β-synthase genes in plant development and abiotic stresses of cotton (Gossypium spp.)
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2022.10.195openalex-snapshot
Identification and molecular evolution of the La and LARP genes in 16 plant species: A focus on the Gossypium hirsutum
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2023.124061openalex-snapshot
Small Auxin Up RNA (SAUR) gene family identification and functional genes exploration during the floral organ and fruit developmental stages in pineapple (Ananas comosus L.) and its response to salinity and drought stresses
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2023.124571openalex-snapshot
Functional characterization of TBL genes revealed the role of GhTBL7 and GhTBL58 in cotton fiber elongation
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2024.138212openalex-snapshot
Comprehensive analysis of the PbrTBL gene family and functional analysis of PbrTBL43 under Botryosphaeria dothidea infection in Pyrus bretschneideri
inferred← citeshttps://doi.org/10.1016/j.imbio.2014.05.003openalex-snapshot
Genetic variants and evolutionary analyses of heparin cofactor II
inferred← citeshttps://doi.org/10.1016/j.indcrop.2021.113614openalex-snapshot
Comprehensive analysis of the R2R3-MYB transcription factor gene family in Populus trichocarpa
inferred← citeshttps://doi.org/10.1016/j.indcrop.2024.118874openalex-snapshot
Genome-wide analysis and expression characteristics of Small Auxin-up RNAs genes in flax (Linum usitatissimum L.)
inferred← citeshttps://doi.org/10.1016/j.indcrop.2026.124312openalex-snapshot
Genome-wide analysis of the MADS-box gene family in Sapindus mukorossi and functional characterization of SmAP1 and SmAP3 in flowering time and pistil development
inferred← citeshttps://doi.org/10.1016/j.jia.2023.04.031openalex-snapshot
Molecular characterization of the SAUR gene family in sweet cherry and functional analysis of PavSAUR55 in the process of abscission
inferred← citeshttps://doi.org/10.1016/j.jia.2024.03.031openalex-snapshot
Evolutionary and expression analysis of sugar transporters from Tartary buckwheat revealed the potential function of FtERD23 in drought stress
inferred← citeshttps://doi.org/10.1016/j.jmb.2006.10.047openalex-snapshot
The Folding Pathway of T4 Lysozyme: The High-resolution Structure and Folding of a Hidden Intermediate
inferred← citeshttps://doi.org/10.1016/j.peptides.2009.04.001openalex-snapshot
FGLamide Allatostatin genes in Arthropoda: Introns early or late?
inferred← citeshttps://doi.org/10.1016/j.pestbp.2025.106663openalex-snapshot
Unveiling the functional contribution of Malpighian tubule specific glucose transporters to xenobiotics tolerance in Spodoptera litura
inferred← citeshttps://doi.org/10.1016/j.pestbp.2026.107252openalex-snapshot
SfIML-1 interacts with integrin β5 to mediate fungal conidial adhesion and immune activation in Spodoptera frugiperda
inferred← citeshttps://doi.org/10.1016/j.plantsci.2016.10.011openalex-snapshot
Dynein light chain family genes in 15 plant species: Identification, evolution and expression profiles
inferred← citeshttps://doi.org/10.1016/j.plantsci.2021.111055openalex-snapshot
Genome-wide analysis of ZAT gene family revealed GhZAT6 regulates salt stress tolerance in G. hirsutum
inferred← citeshttps://doi.org/10.1016/j.plantsci.2023.111749openalex-snapshot
Genome-wide analysis of proline-rich extensin-like receptor kinases (PERKs) gene family reveals their roles in plant development and stress conditions in Oryza sativa L.
inferred← citeshttps://doi.org/10.1016/j.plaphy.2022.09.029openalex-snapshot
GhALKBH10 negatively regulates salt tolerance in cotton
inferred← citeshttps://doi.org/10.1016/j.plaphy.2023.01.034openalex-snapshot
Monoterpene synthases of three closely related sage species (Salvia officinalis, S. fruticosa and S. pomifera, Lamiaceae)
inferred← citeshttps://doi.org/10.1016/j.plaphy.2023.108041openalex-snapshot
A systematic analysis of the subtilase gene family and expression and subcellular localization investigation of anther-specific members in maize
inferred← citeshttps://doi.org/10.1016/j.plaphy.2024.108874openalex-snapshot
Genome-wide identification of Rosa roxburghii CML family genes identifies an RrCML13-RrGGP2 interaction involved in calcium-mediated regulation of ascorbate biosynthesis
inferred← citeshttps://doi.org/10.1016/j.plaphy.2024.109183openalex-snapshot
Comprehensive studies of the serine carboxypeptidase-like (SCPL) gene family in Carya cathayensis revealed the roles of SCPL4 in epigallocatechin-3-gallate (EGCG) synthesis and drought tolerance
inferred← citeshttps://doi.org/10.1016/j.plgene.2019.100197openalex-snapshot
Genome-wide analysis of cyclophilin gene family in wheat and identification of heat stress responsive members
inferred← citeshttps://doi.org/10.1016/j.plgene.2022.100390openalex-snapshot
Genome-wide identification of the bHLH transcription factor family and analysis of bHLH genes related to puerarin biosynthesis in Pueraria lobata var. thomsonii (Benth.)
inferred← citeshttps://doi.org/10.1016/j.polar.2018.11.001openalex-snapshot
Intron length polymorphism of β-tubulin genes in Deschampsia antarctica É. Desv. across the western coast of the Antarctic Peninsula
inferred← citeshttps://doi.org/10.1016/j.postharvbio.2026.114657openalex-snapshot
Genome-wide characterization of the TALE gene family identifies AcTALE13 as a key ripening regulator in kiwifruit (Actinidia chinensis)
inferred← citeshttps://doi.org/10.1016/j.protis.2007.04.005openalex-snapshot
Intron-rich Gene Structure in the Intracellular Plant Parasite Plasmodiophora brassicae
inferred← citeshttps://doi.org/10.1016/j.protis.2016.03.003openalex-snapshot
What an Intron May Tell: Several Sexual Biospecies Coexist in Meriderma spp. (Myxomycetes)
inferred← citeshttps://doi.org/10.1016/j.resmic.2010.10.002openalex-snapshot
Reconciling an archaeal origin of eukaryotes with engulfment: a biologically plausible update of the Eocyte hypothesis
inferred← citeshttps://doi.org/10.1016/j.resmic.2011.03.003openalex-snapshot
The Naegleria genome: a free-living microbial eukaryote lends unique insights into core eukaryotic cell biology
inferred← citeshttps://doi.org/10.1016/j.sajb.2023.06.020openalex-snapshot
Identification and comparative analysis of Histidine phosphotransfer (HP) genes reveal their role in cotton development and stress tolerance
inferred← citeshttps://doi.org/10.1016/j.smim.2009.11.005openalex-snapshot
Those other mammals: The immunoglobulins and T cell receptors of marsupials and monotremes
inferred← citeshttps://doi.org/10.1016/j.stress.2024.100382openalex-snapshot
Functional verification of GhAFP8 in upland cotton under verticillium wilt stress
inferred← citeshttps://doi.org/10.1016/j.stress.2024.100412openalex-snapshot
Genome-wide survey of peptides containing tyrosine sulfation (PSY) gene family and potential PSY specific miRNA revealed their role in plant development and diverse stress conditions in rice (Oryza sativa L.)
inferred← citeshttps://doi.org/10.1016/j.stress.2024.100416openalex-snapshot
In silico analysis and expression profiling reveal the presence of abiotic stress and developmental stage specific Aconitase genes in rice (Oryza sativa L.)
inferred← citeshttps://doi.org/10.1016/j.tibs.2009.02.001openalex-snapshot
On the origin of the cap-dependent initiation of translation in eukaryotes
inferred← citeshttps://doi.org/10.1016/j.tig.2007.01.001openalex-snapshot
A glimpse of a putative pre-intron phase of eukaryotic evolution
inferred← citeshttps://doi.org/10.1016/j.tig.2007.04.001openalex-snapshot
Coevolution of genomic intron number and splice sites
inferred← citeshttps://doi.org/10.1016/j.tig.2008.05.006openalex-snapshot
Rapidly regulated genes are intron poor
inferred← citeshttps://doi.org/10.1016/j.tig.2008.05.007openalex-snapshot
Origin of introns by ‘intronization’ of exonic sequences
inferred← citeshttps://doi.org/10.1016/j.tig.2008.11.004openalex-snapshot
Mystery of intron gain: new data and new models
inferred← citeshttps://doi.org/10.1016/j.tig.2010.10.004openalex-snapshot
DNA double-strand break repair and the evolution of intron density
inferred← citeshttps://doi.org/10.1016/j.tig.2018.01.006openalex-snapshot
Stable Intronic Sequence RNAs Engage in Feedback Loops
inferred← citeshttps://doi.org/10.1016/j.vetimm.2013.10.012openalex-snapshot
Molecular cloning, organization, expression and 3D structural analysis of the MHC class Ia gene in the whitespotted bamboo shark (Chiloscyllium plagiosum)
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.07.037openalex-snapshot
Evolution of serum albumin intron-1 is shaped by a 5′ truncated non-long terminal repeat retrotransposon in western Palearctic water frogs (Neobatrachia)
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.11.013openalex-snapshot
Evolutionary implications of intron–exon distribution and the properties and sequences of the RPL10A gene in eukaryotes
inferred← citeshttps://doi.org/10.1021/acs.jafc.6c06084openalex-snapshot
Vicia faba TEOSINTE BRANCHED1/CYCLOIDEA/PCF Transcription Factors VfTCP19, VfTCP21 and VfTCP23 Contribute to Biotic and Abiotic Stress-Associated Responses
inferred← citeshttps://doi.org/10.1021/cr400496qopenalex-snapshot
Single Molecule Fluorescence Approaches Shed Light on Intracellular RNAs
inferred← citeshttps://doi.org/10.1038/ismej.2013.70openalex-snapshot
Gene invasion in distant eukaryotic lineages: discovery of mutually exclusive genetic elements reveals marine biodiversity
inferred← citeshttps://doi.org/10.1038/nature05248openalex-snapshot
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
inferred← citeshttps://doi.org/10.1038/nature06495openalex-snapshot
Translational control of intron splicing in eukaryotes
inferred← citeshttps://doi.org/10.1038/npre.2009.3888.1openalex-snapshot
A Unifying Scenario on the Origin and Evolution of Cellular and Viral Domains
inferred← citeshttps://doi.org/10.1038/nrg2487openalex-snapshot
RNA-based gene duplication: mechanistic and evolutionary insights
inferred← citeshttps://doi.org/10.1038/nrg2810openalex-snapshot
Constraints and plasticity in genome and molecular-phenome evolution
inferred← citeshttps://doi.org/10.1038/nrmicro2426openalex-snapshot
The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?
inferred← citeshttps://doi.org/10.1038/nsmb1297openalex-snapshot
Failsafe nonsense-mediated mRNA decay does not detectably target eIF4E-bound mRNA
inferred← citeshttps://doi.org/10.1038/s41422-026-01290-0openalex-snapshot
p-LoopF is associated with chromatin looping in large introns of Ginkgo biloba
inferred← citeshttps://doi.org/10.1038/s41559-021-01614-wopenalex-snapshot
Dosage sensitivity and exon shuffling shape the landscape of polymorphic duplicates in Drosophila and humans
inferred← citeshttps://doi.org/10.1038/s41576-025-00929-9openalex-snapshot
Emergence and evolution of protein-coding de novo genes
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