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Genome streamlining via complete loss of introns has occurred multiple times in lichenized fungal mitochondria
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/ece3.5056openalex-snapshot
Genome streamlining via complete loss of introns has occurred multiple times in lichenized fungal mitochondria
inferredcites →https://doi.org/10.1007/978-1-62703-968-0_1openalex-snapshot
Homing Endonucleases: From Genetic Anomalies to Programmable Genomic Clippers
inferredcites →https://doi.org/10.1007/bf00376072openalex-snapshot
The mitochondrial genome of the fission yeast schizosaccharomyces pombe
inferredcites →https://doi.org/10.1007/bf01734359openalex-snapshot
Evolutionary trees from DNA sequences: A maximum likelihood approach
inferredcites →https://doi.org/10.1007/s00239-010-9391-6openalex-snapshot
Evaluation of Models of the Mechanisms Underlying Intron Loss and Gain in Aspergillus Fungi
inferredcites →https://doi.org/10.1007/s00253-018-9350-5openalex-snapshot
Fungal mitochondrial genomes and genetic polymorphisms
inferredcites →https://doi.org/10.1007/s002940050220openalex-snapshot
The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression
inferredcites →https://doi.org/10.1016/0014-5793(93)81429-4openalex-snapshot
Why do genes have introns?
inferredcites →https://doi.org/10.1016/0040-5809(78)90027-8openalex-snapshot
The accumulation of deleterious genes in a population—Muller's Ratchet
inferredcites →https://doi.org/10.1016/0092-8674(83)90457-9openalex-snapshot
Two intron sequences in yeast mitochondrial COX1 gene: Homology among URF-containing introns and strain-dependent variation in flanking exons
inferredcites →https://doi.org/10.1016/0092-8674(86)90756-7openalex-snapshot
Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro
inferredcites →https://doi.org/10.1016/0092-8674(91)90187-4openalex-snapshot
RNA-mediated recombination in S. cerevisiae
inferredcites →https://doi.org/10.1016/j.cub.2018.03.050openalex-snapshot
Absence of Complex I Implicates Rearrangement of the Respiratory Chain in European Mistletoe
inferredcites →https://doi.org/10.1016/j.gde.2004.09.010openalex-snapshot
Homing endonuclease genes: the rise and fall and rise again of a selfish element
inferredcites →https://doi.org/10.1016/j.resmic.2004.01.008openalex-snapshot
Regulation of transposition in bacteria
inferredcites →https://doi.org/10.1016/j.tig.2005.10.006openalex-snapshot
The biology of intron gain and loss
inferredcites →https://doi.org/10.1016/j.tig.2007.01.006openalex-snapshot
Mitochondrial introns: a critical view
inferredcites →https://doi.org/10.1016/j.tplants.2003.09.001openalex-snapshot
Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged
inferredcites →https://doi.org/10.1016/j.tree.2017.05.002openalex-snapshot
Reshaping Darwin’s Tree: Impact of the Symbiome
inferredcites →https://doi.org/10.1016/j.ympev.2006.11.029openalex-snapshot
Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene
inferredcites →https://doi.org/10.1016/j.ympev.2010.02.013openalex-snapshot
Evolutionary dynamics of introns and homing endonuclease ORFs in a region of the large subunit of the mitochondrial rRNA in Glomus species (arbuscular mycorrhizal fungi, Glomeromycota)
inferredcites →https://doi.org/10.1016/j.ympev.2014.04.003openalex-snapshot
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families
inferredcites →https://doi.org/10.1016/s0013-9351(03)00141-5openalex-snapshot
Aspects of the biomonitoring studies using mosses and lichens as indicators of metal pollution
inferredcites →https://doi.org/10.1016/s0378-1119(99)00270-xopenalex-snapshot
Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system
inferredcites →https://doi.org/10.1016/s0959-437x(98)80031-2openalex-snapshot
The recent origins of spliceosomal introns revisited
inferredcites →https://doi.org/10.1016/s0959-437x(99)00024-6openalex-snapshot
Insights into the evolutionary process of genome degradation
inferredcites →https://doi.org/10.1016/s0964-8305(97)00056-5openalex-snapshot
Major impacts made by lichens in biodeterioration processes
inferredcites →https://doi.org/10.1016/s1055-7903(03)00194-5openalex-snapshot
Evolution of mitochondrial gene content: gene loss and transfer to the nucleus
inferredcites →https://doi.org/10.1017/s0016672397002899openalex-snapshot
Rapid fixation of deleterious alleles can be caused by Muller's ratchet
inferredcites →https://doi.org/10.1029/96pa03934openalex-snapshot
Postglacial connection of the Black Sea to the Mediterranean and its relation to the timing of sapropel formation
inferredcites →https://doi.org/10.1038/289169a0openalex-snapshot
Relationship between fungus and alga in the lichen Cladonia cristatella Tuck
inferredcites →https://doi.org/10.1038/35047064openalex-snapshot
Mitochondrial genome variation and the origin of modern humans
inferredcites →https://doi.org/10.1038/432165bopenalex-snapshot
Gene transfer from parasitic to host plants
inferredcites →https://doi.org/10.1038/44766openalex-snapshot
Inferring the historical patterns of biological evolution
inferredcites →https://doi.org/10.1038/nature06903openalex-snapshot
A novel route for ATP acquisition by the remnant mitochondria of Encephalitozoon cuniculi
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/nrg1524openalex-snapshot
The ecology of the genome — mobile DNA elements and their hosts
inferredcites →https://doi.org/10.1038/nrg1807openalex-snapshot
The evolution of spliceosomal introns: patterns, puzzles and progress
inferredcites →https://doi.org/10.1038/nrg2776openalex-snapshot
Alternative splicing and evolution: diversification, exon definition and function
inferredcites →https://doi.org/10.1038/nrg793openalex-snapshot
Plant transposable elements: where genetics meets genomics
inferredcites →https://doi.org/10.1038/s41598-018-23106-xopenalex-snapshot
Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms
inferredcites →https://doi.org/10.1038/srep10028openalex-snapshot
A Tale of Two Hyper-diversities: Diversification dynamics of the two largest families of lichenized fungi
inferredcites →https://doi.org/10.1073/pnas.1409284111openalex-snapshot
Evolutionary origin of insect– Wolbachia nutritional mutualism
inferredcites →https://doi.org/10.1073/pnas.1803361115openalex-snapshot
Genetics of alternative splicing evolution during sunflower domestication
inferredcites →https://doi.org/10.1073/pnas.91.25.12150openalex-snapshot
De novo synthesis of an intron by the maize transposable element Dissociation.
inferredcites →https://doi.org/10.1073/pnas.93.11.5619openalex-snapshot
Two mitochondrial group I introns in a metazoan, the sea anemone Metridium senile: one intron contains genes for subunits 1 and 3 of NADH dehydrogenase.
inferredcites →https://doi.org/10.1073/pnas.95.24.14244openalex-snapshot
Explosive invasion of plant mitochondria by a group I intron
inferredcites →https://doi.org/10.1073/pnas.96.24.13880openalex-snapshot
Recurrent invasion and extinction of a selfish gene
inferredcites →https://doi.org/10.1073/pnas.97.13.6960openalex-snapshot
Dynamic evolution of plant mitochondrial genomes: Mobile genes and introns and highly variable mutation rates
inferredcites →https://doi.org/10.1080/10635150801910451openalex-snapshot
The Limitations of Ancestral State Reconstruction and the Evolution of the Ascus in the Lecanorales (Lichenized Ascomycota)
inferredcites →https://doi.org/10.1080/23802359.2018.1445485openalex-snapshot
The complete mitochondrial genomes of five lichenized fungi in the genus Usnea (Ascomycota: Parmeliaceae)
inferredcites →https://doi.org/10.1080/23802359.2018.1463827openalex-snapshot
Genomic insights into the mitochondria of 11 eastern North American species ofCladonia
inferredcites →https://doi.org/10.1080/24701394.2017.1404042openalex-snapshot
The intron landscape of the mtDNA cytb gene among the Ascomycota: introns and intron-encoded open reading frames
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot
MRBAYES: Bayesian inference of phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot
APE: Analyses of Phylogenetics and Evolution in R language
inferredcites →https://doi.org/10.1093/bioinformatics/bth352openalex-snapshot
Automatic annotation of organellar genomes with DOGMA
inferredcites →https://doi.org/10.1093/bioinformatics/btm538openalex-snapshot
GEIGER: investigating evolutionary radiations
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/genetics/143.1.137openalex-snapshot
Epigenetic Control of a Transposon-Inactivated Gene in Neurospora is Dependent on DNA Methylation
inferredcites →https://doi.org/10.1093/molbev/msl174openalex-snapshot
Dynamics of Reductive Genome Evolution in Mitochondria and Obligate Intracellular Microbes
inferredcites →https://doi.org/10.1093/molbev/msv122openalex-snapshot
Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and AntarcticMicromonasPopulations
inferredcites →https://doi.org/10.1093/molbev/msx116openalex-snapshot
TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
inferredcites →https://doi.org/10.1093/nar/29.18.3757openalex-snapshot
Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkx391openalex-snapshot
GeSeq – versatile and accurate annotation of organelle genomes
inferredcites →https://doi.org/10.1093/oso/9780195135848.001.0001openalex-snapshot
Molecular Evolution and Phylogenetics
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040023openalex-snapshot
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.
inferredcites →https://doi.org/10.1096/fasebj.7.1.8422962openalex-snapshot
Group I and group II introns.
inferredcites →https://doi.org/10.1101/gad.1162503openalex-snapshot
Two for the price of one: a bifunctional intron-encoded DNA endonuclease-RNA maturase
inferredcites →https://doi.org/10.1101/gr.3002305openalex-snapshot
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
inferredcites →https://doi.org/10.1105/tpc.111.087189openalex-snapshot
Origins and Recombination of the Bacterial-Sized Multichromosomal Mitochondrial Genome of Cucumber
inferredcites →https://doi.org/10.1111/1462-2920.14379openalex-snapshot
Mitochondrial genome, comparative analysis and evolutionary insights into the entomopathogenic fungus Hirsutella thompsonii
inferredcites →https://doi.org/10.1111/1574-6968.12387openalex-snapshot
Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogenRhizoctonia solaniAG-3
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00285.xopenalex-snapshot
TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot
phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/mec.12421openalex-snapshot
The impact of microbial symbionts on host plant utilization by herbivorous insects
inferredcites →https://doi.org/10.1111/mec.14519openalex-snapshot
Reductions in complexity of mitochondrial genomes in lichen‐forming fungi shed light on genome architecture of obligate symbioses
inferredcites →https://doi.org/10.1126/science.1118884openalex-snapshot
Mutation Pressure and the Evolution of Organelle Genomic Architecture
inferredcites →https://doi.org/10.1126/science.283.5407.1476openalex-snapshot
Mitochondrial Evolution
inferredcites →https://doi.org/10.1128/9781555817954.ch31openalex-snapshot
Mobile Introns: Pathways and Proteins
inferredcites →https://doi.org/10.1146/annurev-micro-091213-112901openalex-snapshot
The Tiniest Tiny Genomes
inferredcites →https://doi.org/10.1186/1471-2105-10-s6-s15openalex-snapshot
Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria
inferredcites →https://doi.org/10.1186/1741-7007-9-22openalex-snapshot
Learning to live together: mutualism between self-splicing introns and their hosts
inferredcites →https://doi.org/10.1186/s13100-018-0129-0openalex-snapshot
Deletion of the sex-determining gene SXI1α enhances the spread of mitochondrial introns in Cryptococcus neoformans
inferredcites →https://doi.org/10.1371/journal.pbio.0020422openalex-snapshot
Patterns of Intron Gain and Loss in Fungi
inferredcites →https://doi.org/10.1371/journal.pgen.0030013openalex-snapshot
Comparative Genomics of Large Mitochondria in Placozoans
inferredcites →https://doi.org/10.1371/journal.pone.0065576openalex-snapshot
Dating the Diversification of the Major Lineages of Ascomycota (Fungi)
inferredcites →https://doi.org/10.1371/journal.pone.0121325openalex-snapshot
Lichen Symbiosis: Nature's High Yielding Machines for Induced Hydrogen Production
inferredcites →https://doi.org/10.1534/g3.113.009910openalex-snapshot
Horizontal Transfer and Gene Conversion as an Important Driving Force in Shaping the Landscape of Mitochondrial Introns
inferredcites →https://doi.org/10.18637/jss.v022.i04openalex-snapshot
The ade4 Package: Implementing the Duality Diagram for Ecologists
inferredcites →https://doi.org/10.3897/mycokeys.31.23568openalex-snapshot
The lichens of the Alps – an annotated checklist
inferredcites →https://doi.org/10.5808/gi.2015.13.4.112openalex-snapshot
Introns: The Functional Benefits of Introns in Genomes
inferredcites →https://doi.org/10.5962/p.381939openalex-snapshot
Porpidia soredizodes (lichenized ascomycota) in North America.
inferredcites →https://doi.org/10.5962/p.386073openalex-snapshot
Studies in lichens and lichenicolous fungi-No. 19: Further notes on species from the Coastal Plain of southeastern North America
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.3897/imafungus.16.159349zenodo-depositor-declared
Characterization of the mitochondrial genomes for Ophiostoma ips and related taxa from various geographic origins and related species: large intron-rich genomes and complex intron arrangements
inferred← citeshttps://doi.org/10.1002/ajb2.1339openalex-snapshot
A taxonomically broad metagenomic survey of 339 species spanning 57 families suggests cystobasidiomycete yeasts are not ubiquitous across all lichens
inferred← citeshttps://doi.org/10.1002/ece3.6749openalex-snapshot
The insertion of a mitochondrial selfish element into the nuclear genome and its consequences
inferred← citeshttps://doi.org/10.1002/tax.12719openalex-snapshot
Lectotypification of the threatened endemic Appalachian lichen Alectoria fallacina
inferred← citeshttps://doi.org/10.1007/s13353-023-00791-7openalex-snapshot
The mitogenomes characterization of two Peltigera species (Peltigera elisabethae and Peltigera polydactylon) and comparative mitogenomic analyses of six Peltigera
inferred← citeshttps://doi.org/10.1016/j.fgb.2026.104104openalex-snapshot
An exceptionally large, intron-rich mitochondrial genome and complex RNA processing in the desert-dwelling fungus Helvella bachu
inferred← citeshttps://doi.org/10.1016/j.gene.2024.148315openalex-snapshot
The complete mitochondrial genome of Penicillium expansum: Insights into the fungal evolution and phylogeny
inferred← citeshttps://doi.org/10.1038/s41598-020-58279-xopenalex-snapshot
Genome-scale data reveal the role of hybridization in lichen-forming fungi
inferred← citeshttps://doi.org/10.1038/s44320-025-00118-0openalex-snapshot
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage
inferred← citeshttps://doi.org/10.1074/jbc.rev120.009192openalex-snapshot
Brain cell somatic gene recombination and its phylogenetic foundations
inferred← citeshttps://doi.org/10.1080/00275514.2022.2157665openalex-snapshot
Mitochondrial genomes in the iconic reindeer lichens: Architecture, variation, and synteny across multiple evolutionary scales
inferred← citeshttps://doi.org/10.1080/24701394.2019.1687691openalex-snapshot
The fungal mitochondrial Nad5 pan-genic intron landscape
inferred← citeshttps://doi.org/10.1093/g3journal/jkab132openalex-snapshot
Mitochondrial genomes of the human pathogens Coccidioides immitis and Coccidioides posadasii
inferred← citeshttps://doi.org/10.1093/gbe/evaa126openalex-snapshot
The Coevolution of Fungal Mitochondrial Introns and Their Homing Endonucleases (GIY-YIG and LAGLIDADG)
inferred← citeshttps://doi.org/10.1093/gbe/evae094openalex-snapshot
Discovery of New Genomic Configuration of Mating-Type Loci in the Largest Lineage of Lichen-Forming Fungi
inferred← citeshttps://doi.org/10.1101/2021.03.17.435722openalex-snapshot
Lichen fungi do not depend on the alga for ATP production
inferred← citeshttps://doi.org/10.1101/787044openalex-snapshot
The insertion of a mitochondrial selfish element into the nuclear genome and its consequences
inferred← citeshttps://doi.org/10.1111/mec.16010openalex-snapshot
Lichen fungi do not depend on the alga for ATP production: A comment on Pogoda et al. (2018)
inferred← citeshttps://doi.org/10.1186/s12864-025-12103-wopenalex-snapshot
Characterization of the five Amanita complete mitochondrial genome and the phylogenetic relationship with other Amanita fungi
inferred← citeshttps://doi.org/10.1371/journal.pone.0285818openalex-snapshot
De novo mitochondrial genome sequencing of Cladonia subulata and phylogenetic analysis with other dissimilar species
inferred← citeshttps://doi.org/10.1639/0007-2745-123.2.225openalex-snapshot
Caloplaca edwardiana (Teloschistaceae, lichenized Ascomycetes), a new crustose species from the southern Appalachian Mountains of eastern North America
inferred← citeshttps://doi.org/10.1639/0007-2745-124.3.362openalex-snapshot
Bacidia depriestiana (Ramalinaceae), a new species from the southern Appalachian Mountains of eastern North America
inferred← citeshttps://doi.org/10.3389/fevo.2019.00484openalex-snapshot
Whole Genome Shotgun Sequencing Detects Greater Lichen Fungal Diversity Than Amplicon-Based Methods in Environmental Samples
inferred← citeshttps://doi.org/10.3389/fmicb.2020.00765openalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fmicb.2021.714651openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/cells10082001openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/jof12010075openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/jof12100729openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/life10120356openalex-snapshot
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Biotechnology-based Profiling of Lichens and Their Metabolites for Therapeutic Applications
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