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Genealogical trees, coalescent theory and the analysis of genetic polymorphisms

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Molecular evolution and modern human origins
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Handbook of Statistical Genetics
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Variation in the human genome
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Distinguishing Migration from Isolation Using the Variance of Pairwise Differences
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Maximum Likelihood Estimation of Population Divergence Times and Population Phylogenies under the Infinite Sites Model
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Recombination as a Point Process along Sequences
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Coalescing into the 21st Century: An Overview and Prospects of Coalescent Theory
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Inference from Gene Trees in a Subdivided Population
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Case–Control Studies of Association in Structured or Admixed Populations
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The Probability of Topological Concordance of Gene Trees and Species Trees
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Molecular Epidemiology for Infectious Diseases
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Bridging phylogenetics and population genetics with gene tree models
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Mathematical and Statistical Developments of Evolutionary Theory
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Population Genetics Theory - The Past and the Future
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The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence
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Evolutionary genetics: From molecules to morphology
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Properties of a neutral allele model with intragenic recombination
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Line-of-descent and genealogical processes, and their applications in population genetics models
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In the name of the father: surnames and genetics
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Linkage disequilibrium: what history has to tell us
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Gene trees and species trees are not the same
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Horizontal gene transfer among microbial genomes: new insights from complete genome analysis
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Molecular Epidemiology of Infectious Diseases
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On the genealogy of nested subsamples from a haploid population
inferredcites →https://doi.org/10.1017/s0016672301005183openalex-snapshot
Simulating genealogies of selected alleles in a population of variable size
inferredcites →https://doi.org/10.1017/s0016672399003870openalex-snapshot
Recombination and the power of statistical tests of neutrality
inferredcites →https://doi.org/10.1017/s0021900200034446openalex-snapshot
On the genealogy of large populations
inferredcites →https://doi.org/10.1038/18435openalex-snapshot
The limits of selection during maize domestication
inferredcites →https://doi.org/10.1038/325031a0openalex-snapshot
Mitochondrial DNA and human evolution
inferredcites →https://doi.org/10.1038/35047064openalex-snapshot
Mitochondrial genome variation and the origin of modern humans
inferredcites →https://doi.org/10.1038/4482openalex-snapshot
Population genetics—making sense out of sequence
inferredcites →https://doi.org/10.1038/9642openalex-snapshot
Prospects for whole-genome linkage disequilibrium mapping of common disease genes
inferredcites →https://doi.org/10.1046/j.1365-2540.2001.00895.xopenalex-snapshot
Statistical tests of selective neutrality in the age of genomics
inferredcites →https://doi.org/10.1046/j.1420-9101.2001.00335.xopenalex-snapshot
The genic view of the process of speciation
inferredcites →https://doi.org/10.1046/j.1420-9101.2001.00339.xopenalex-snapshot
A genic view of species integration
inferredcites →https://doi.org/10.1073/pnas.081068098openalex-snapshot
Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
inferredcites →https://doi.org/10.1073/pnas.090541597openalex-snapshot
The phylogeny of closely related species as revealed by the genealogy of a speciation gene, Odysseus
inferredcites →https://doi.org/10.1073/pnas.87.24.9732openalex-snapshot
Polymorphism at the self-incompatibility locus in Solanaceae predates speciation.
inferredcites →https://doi.org/10.1073/pnas.96.5.2187openalex-snapshot
Coalescent estimates of HIV-1 generation time in vivo
inferredcites →https://doi.org/10.1086/302052openalex-snapshot
On the Probability of Neanderthal Ancestry
inferredcites →https://doi.org/10.1086/302959openalex-snapshot
Association Mapping in Structured Populations
inferredcites →https://doi.org/10.1086/318206openalex-snapshot
Genomic Divergences between Humans and Other Hominoids and the Effective Population Size of the Common Ancestor of Humans and Chimpanzees
inferredcites →https://doi.org/10.1086/321275openalex-snapshot
Linkage Disequilibrium in Humans: Models and Data
inferredcites →https://doi.org/10.1086/339271openalex-snapshot
Fine-Scale Mapping of Disease Loci via Shattered Coalescent Modeling of Genealogies
inferredcites →https://doi.org/10.1089/cmb.1996.3.479openalex-snapshot
Ancestral Inference from Samples of DNA Sequences with Recombination
inferredcites →https://doi.org/10.1093/bib/2.3.305openalex-snapshot
Handbook of Statistical Genetics
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DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis.
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Generating samples under a Wright–Fisher neutral model of genetic variation
inferredcites →https://doi.org/10.1093/genetics/105.2.437openalex-snapshot
EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/120.3.819openalex-snapshot
The coalescent process in models with selection
inferredcites →https://doi.org/10.1093/genetics/122.4.957openalex-snapshot
Gene genealogy in three related populations: consistency probability between gene and population trees.
inferredcites →https://doi.org/10.1093/genetics/123.3.585openalex-snapshot
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
inferredcites →https://doi.org/10.1093/genetics/124.4.967openalex-snapshot
Allelic genealogy under overdominant and frequency-dependent selection and polymorphism of major histocompatibility complex loci.
inferredcites →https://doi.org/10.1093/genetics/127.2.429openalex-snapshot
Inferences of species phylogeny in relation to segregation of ancient polymorphisms.
inferredcites →https://doi.org/10.1093/genetics/136.4.1329openalex-snapshot
Evidence for positive selection in the superoxide dismutase (Sod) region of Drosophila melanogaster.
inferredcites →https://doi.org/10.1093/genetics/140.4.1421openalex-snapshot
Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling.
inferredcites →https://doi.org/10.1093/genetics/144.3.1247openalex-snapshot
Optimal Sequencing Strategies for Surveying Molecular Genetic Diversity
inferredcites →https://doi.org/10.1093/genetics/144.3.1321openalex-snapshot
Discord Between the Phylogenies Inferred From Molecular Versus Functional Data: Uneven Rates of Functional Evolution or Low Levels of Gene Flow?
inferredcites →https://doi.org/10.1093/genetics/145.2.505openalex-snapshot
Inferring Coalescence Times From DNA Sequence Data
inferredcites →https://doi.org/10.1093/genetics/145.2.519openalex-snapshot
The Genealogy of Samples in Models With Selection
inferredcites →https://doi.org/10.1093/genetics/145.3.833openalex-snapshot
A Coalescent Estimator of the Population Recombination Rate
inferredcites →https://doi.org/10.1093/genetics/149.1.429openalex-snapshot
Maximum Likelihood Estimation of Population Growth Rates Based on the Coalescent
inferredcites →https://doi.org/10.1093/genetics/149.3.1539openalex-snapshot
Inference of Population History Using a Likelihood Approach
inferredcites →https://doi.org/10.1093/genetics/150.1.499openalex-snapshot
Genealogical Inference From Microsatellite Data
inferredcites →https://doi.org/10.1093/genetics/152.2.763openalex-snapshot
Maximum-Likelihood Estimation of Migration Rates and Effective Population Numbers in Two Populations Using a Coalescent Approach
inferredcites →https://doi.org/10.1093/genetics/154.3.1271openalex-snapshot
Detecting Ancient Admixture in Humans Using Sequence Polymorphism Data
inferredcites →https://doi.org/10.1093/genetics/155.2.909openalex-snapshot
Genetic Drift in an Infinite Population: The Pseudohitchhiking Model
inferredcites →https://doi.org/10.1093/genetics/156.4.1461openalex-snapshot
Origins of the Coalescent: 1974-1982
inferredcites →https://doi.org/10.1093/genetics/158.2.885openalex-snapshot
Distinguishing Migration From Isolation: A Markov Chain Monte Carlo Approach
inferredcites →https://doi.org/10.1093/genetics/28.6.491openalex-snapshot
MUTATIONS OF BACTERIA FROM VIRUS SENSITIVITY TO VIRUS RESISTANCE
inferredcites →https://doi.org/10.1093/oso/9780195062892.001.0001openalex-snapshot
Oxford Surveys in Evolutionary Biology
inferredcites →https://doi.org/10.1093/oso/9780198599623.003.0009openalex-snapshot
The Relationship between Coalescence Times and Population Divergence Times
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003747openalex-snapshot
Phylogenetic Relationships and Ancient Incomplete Lineage Sorting Among Cichlid Fishes in Lake Tanganyika as Revealed by Analysis of the Insertion of Retroposons
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003791openalex-snapshot
Testing Multiregionality of Modern Human Origins
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003842openalex-snapshot
Estimating Mutation Rate and Generation Time from Longitudinal Samples of DNA Sequences
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003883openalex-snapshot
On a Test of Depaulis and Veuille
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003884openalex-snapshot
Coalescent Simulations and Statistical Tests of Neutrality
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003885openalex-snapshot
Haplotype Tests Using Coalescent Simulations Conditional on the Number of Segregating Sites
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025761openalex-snapshot
Molecular phylogeny of the hominoids: inferences from multiple independent DNA sequence data sets
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026091openalex-snapshot
Population growth of human Y chromosomes: a study of Y chromosome microsatellites
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026228openalex-snapshot
A Comparison of Estimators of the Population Recombination Rate
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040517openalex-snapshot
Relationships between gene trees and species trees.
inferredcites →https://doi.org/10.1093/sysbio/40.3.355openalex-snapshot
African Origin of Human Mitochondrial DNA Reexamined
inferredcites →https://doi.org/10.1093/sysbio/46.3.523openalex-snapshot
Gene Trees in Species Trees
inferredcites →https://doi.org/10.1101/gr.194801openalex-snapshot
Bayesian Analysis of Haplotypes for Linkage Disequilibrium Mapping
inferredcites →https://doi.org/10.1111/1467-985x.00264openalex-snapshot
Inferences from DNA Data: Population Histories, Evolutionary Processes and Forensic Match Probabilities
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Inference in Molecular Population Genetics
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LIKELIHOOD ANALYSIS OF ONGOING GENE FLOW AND HISTORICAL ASSOCIATION
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THE EFFECTS OF SUBDIVISION ON THE GENETIC DIVERGENCE OF POPULATIONS AND SPECIES
inferredcites →https://doi.org/10.1111/j.0014-3820.2000.tb01231.xopenalex-snapshot
PERSPECTIVE: GENE DIVERGENCE, POPULATION DIVERGENCE, AND THE VARIANCE IN COALESCENCE TIME IN PHYLOGEOGRAPHIC STUDIES
inferredcites →https://doi.org/10.1111/j.1558-5646.1983.tb05528.xopenalex-snapshot
TESTING THE CONSTANT-RATE NEUTRAL ALLELE MODEL WITH PROTEIN SEQUENCE DATA
inferredcites →https://doi.org/10.1111/j.1558-5646.1998.tb01653.xopenalex-snapshot
TESTING MODELS OF MIGRATION AND ISOLATION AMONG POPULATIONS OF CHINOOK SALMON (ONCORHYNCHUS TSCHAWYTSCHA)
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MAXIMUM-LIKELIHOOD ESTIMATION OF POPULATION DIVERGENCE TIMES AND POPULATION PHYLOGENY IN MODELS WITHOUT MUTATION
inferredcites →https://doi.org/10.1126/science.1065573openalex-snapshot
Blocks of Limited Haplotype Diversity Revealed by High-Resolution Scanning of Human Chromosome 21
inferredcites →https://doi.org/10.1126/science.1590849openalex-snapshot
Human Origins and Analysis of Mitochondrial DNA Sequences
inferredcites →https://doi.org/10.1126/science.1738849openalex-snapshot
Human Origins and Analysis of Mitochondrial DNA Sequences
inferredcites →https://doi.org/10.1126/science.1840702openalex-snapshot
African Populations and the Evolution of Human Mitochondrial DNA
inferredcites →https://doi.org/10.1136/jmg.33.11.976-aopenalex-snapshot
Variation in the Human Genome
inferredcites →https://doi.org/10.1146/annurev.ge.22.120188.002513openalex-snapshot
PHYLOGENIES FROM MOLECULAR SEQUENCES: INFERENCE AND RELIABILITY
inferredcites →https://doi.org/10.1146/annurev.ge.29.120195.002153openalex-snapshot
COALESCENTS AND GENEALOGICAL STRUCTURE UNDER NEUTRALITY
inferredcites →https://doi.org/10.1146/annurev.genet.29.1.401openalex-snapshot
Coalescents and Genealogical Structure under Neutrality
inferredcites →https://doi.org/10.1146/annurev.genom.1.1.539openalex-snapshot
Methods to Detect Selection in Populations with Applications to the Human
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Statistical Inference From Genetic Data on Pedigrees
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Ancestral Inference in Population Genetics
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Molecular Ecology and Evolution: Approaches and Applications.
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OXFORD SURVEYS IN EVOLUTIONARY BIOLOGY
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African Origin of Human Mitochondrial DNA Reexamined
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The Evolution of HIV

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Genetic variation and dispersal patterns in three varieties of Pinus caribaea (Pinaceae) in the Caribbean Basin
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The hyperdominant tropical tree Eschweilera coriacea (Lecythidaceae) shows higher genetic heterogeneity than sympatric Eschweilera species in French Guiana
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Coalescent Theory
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References
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Coalescent
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Single Nucleotide Polymorphisms in Human Disease and Evolution: Phylogenies and Genealogies
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Phylogeography
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Palaeogenomics of Extinct and Archaic Hominins
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Gene flow in the Iberian Peninsula determined from Y‐chromosome STR loci
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Autosomal microsatellite variability of the Arrernte people of Australia
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Discrepancies between genetic and ecological divergence patterns suggest a complex biogeographic history in a Neotropical genus
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Effective number of different populations: A new concept and how to use it
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Coalescent analyses show isolation without migration in two closely related tropical orioles: the case of Icterus graduacauda and I cterus chrysater
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Phylogeography of a widely distributed plant species reveals cryptic genetic lineages with parallel phenotypic responses to warming and drought conditions
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New developments in the genetic evidence for modern human origins
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Simulating Realistic Genomic Data With Rare Variants
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Capturing Morpho‐Genetic Diversity of Paramyrothecium roridum Across Cotton Growing Regions of Haryana, India
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Founder mutation inKCNJ10in Pakistani patients with EAST syndrome
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Phylogeography of South European mammals
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Genomic Selection
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Coalescent Models of Demographic History: Application to Plant Domestication
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Ancient DNA and the Neanderthals
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A Population Genomics Lexicon
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Analyses of Nuclear Reads Obtained Using Genome Skimming
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Phylogeographical Approaches to the Study of Plant Domestication, with Special Emphasis on Perennial Plants
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DNA Sequence Polymorphism Analysis Using DnaSP
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Bacterial Microevolution and the Pangenome
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Estimating Evolutionary Rates and Timescales from Time-Stamped Data
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Reticulate Evolution
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Host–Symbiont–Pathogen–Host Interactions: Wolbachia, Vector-Transmitted Human Pathogens, and the Importance of Quantitative Models of Multipartite Coevolution
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The Gene Pool Concept Applied to Crop Wild Relatives: An Evolutionary Perspective
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Populationsgenetik
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Haplotype Structure
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Arabidopsis
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Asexual Speciation
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Paradigm Shifts in the Phylogeographic Analysis of Seaweeds
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Molecular Evolution of Parasitic Helminths
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Phylogeography of Medicinal Plant
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Somiglianze e differenze genetiche nei primati e loro implicazioni
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Addressing alpine plant phylogeography using integrative distributional, demographic and coalescent modeling
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How do the type of QTL effect and the form of the residual term influence QTL detection in multi-parent populations? A case study in the maize EU-NAM population
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inferred← citeshttps://doi.org/10.1007/s00227-018-3437-5openalex-snapshot
Comparative population genetics and demographic history of two polychaete species suggest that coastal lagoon populations evolve under alternate regimes of gene flow
inferred← citeshttps://doi.org/10.1007/s00267-014-0388-6openalex-snapshot
Conservation Considerations for a Management Measure: An Integrated Approach to Hare Rearing and Release
inferred← citeshttps://doi.org/10.1007/s00439-005-0028-6openalex-snapshot
Independent methods for evolutionary genetic dating provide insights into Y-chromosomal STR mutation rates confirming data from direct father–son transmissions
inferred← citeshttps://doi.org/10.1007/s00606-014-1101-1openalex-snapshot
Phylogeography and demographic history of Zamia paucijuga Wieland (Zamiaceae), a cycad species from the Mexican Pacific slope
inferred← citeshttps://doi.org/10.1007/s10327-016-0643-1openalex-snapshot
Genetic evidence of local adaption and long distance migration in Blumeria graminis f. sp. hordei populations from China
inferred← citeshttps://doi.org/10.1007/s10493-006-9035-0openalex-snapshot
Genetic variation of ticks (Ixodes ricinus L.) in the Lithuanian and Norwegian populations
inferred← citeshttps://doi.org/10.1007/s10539-010-9218-2openalex-snapshot
On the need for integrative phylogenomics, and some steps toward its creation
inferred← citeshttps://doi.org/10.1007/s10592-011-0228-7openalex-snapshot
The structure of population genetic diversity in Vallisneria americana in the Chesapeake Bay: implications for restoration
inferred← citeshttps://doi.org/10.1007/s10592-012-0432-0openalex-snapshot
Long-term population size of the North Atlantic humpback whale within the context of worldwide population structure
inferred← citeshttps://doi.org/10.1007/s10592-022-01440-yopenalex-snapshot
Population genetics of three at-risk tiger beetles Habroscelimorpha dorsalis dorsalis, H. d. media, and Ellipsoptera puritana
inferred← citeshttps://doi.org/10.1007/s10670-015-9784-4openalex-snapshot
Probability and Manipulation: Evolution and Simulation in Applied Population Genetics
inferred← citeshttps://doi.org/10.1007/s10681-007-9465-8openalex-snapshot
Using molecular markers for detecting domestication, improvement, and adaptation genes
inferred← citeshttps://doi.org/10.1007/s10682-020-10057-xopenalex-snapshot
Salinity tolerance explains the contrasting phylogeographic patterns of two swimming crabs species along the tropical western Atlantic
inferred← citeshttps://doi.org/10.1007/s10709-006-0030-5openalex-snapshot
The molecular population genetics of shoot development in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1007/s10709-012-9662-9openalex-snapshot
Human influence on the population decline and loss of genetic diversity in a small and isolated population of Sichuan snub-nosed monkeys (Rhinopithecus roxellana)
inferred← citeshttps://doi.org/10.1007/s10739-016-9448-5openalex-snapshot
Natural Selection, Adaptive Topographies and the Problem of Statistical Inference: The Moraba scurra Controversy Under the Microscope
inferred← citeshttps://doi.org/10.1007/s10980-005-7756-9openalex-snapshot
Integrating patterns across multiple genetic markers to infer spatial processes
inferred← citeshttps://doi.org/10.1007/s11295-006-0038-0openalex-snapshot
A computer simulation study on the number of loci and trees required to estimate genetic variability in cacao (Theobroma cacao L.)
inferred← citeshttps://doi.org/10.1007/s11295-015-0894-6openalex-snapshot
Inferences of demographic history and fine-scale landscape genetics in Cycas panzhihuaensis and implications for its conservation
inferred← citeshttps://doi.org/10.1007/s11538-009-9428-4openalex-snapshot
The Mutation Process in Colored Coalescent Theory
inferred← citeshttps://doi.org/10.1007/s42113-024-00214-8openalex-snapshot
Lessons for Theory from Scientific Domains Where Evidence is Sparse or Indirect
inferred← citeshttps://doi.org/10.1016/b978-0-12-369420-1.00002-0openalex-snapshot
Concepts of Population Genomics
inferred← citeshttps://doi.org/10.1016/b978-0-12-800049-6.00109-8openalex-snapshot
Phylogeography
inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.90693-9openalex-snapshot
Population Genetics
inferred← citeshttps://doi.org/10.1016/b978-0-12-822562-2.00152-3openalex-snapshot
Scale, Concept and Effects of
inferred← citeshttps://doi.org/10.1016/b978-0-444-53636-5.00017-2openalex-snapshot
Palaeogenetics for Ostracods (Crustacea, Ostracoda)
inferred← citeshttps://doi.org/10.1016/bs.aecr.2016.10.005openalex-snapshot
Importance of Microorganisms to Macroorganisms Invasions
inferred← citeshttps://doi.org/10.1016/j.ajhg.2013.02.002openalex-snapshot
An African American Paternal Lineage Adds an Extremely Ancient Root to the Human Y Chromosome Phylogenetic Tree
inferred← citeshttps://doi.org/10.1016/j.ajhg.2023.10.017openalex-snapshot
Tree-based QTL mapping with expected local genetic relatedness matrices
inferred← citeshttps://doi.org/10.1016/j.cca.2005.03.002openalex-snapshot
New metallothionein mRNAs in Gobio gobio reveal at least three gene duplication events in cyprinid metallothionein evolution
inferred← citeshttps://doi.org/10.1016/j.cell.2023.02.016openalex-snapshot
A reference cell tree will serve science better than a reference cell atlas
inferred← citeshttps://doi.org/10.1016/j.cels.2021.05.017openalex-snapshot
Learning the protein language: Evolution, structure, and function
inferred← citeshttps://doi.org/10.1016/j.cub.2004.07.014openalex-snapshot
Sex Determination: Balancing Selection in the Honey Bee
inferred← citeshttps://doi.org/10.1016/j.fbr.2017.11.002openalex-snapshot
Fungal species and their boundaries matter – Definitions, mechanisms and practical implications
inferred← citeshttps://doi.org/10.1016/j.foreco.2004.05.007openalex-snapshot
Relating processes to patterns of genetic variation across landscapes
inferred← citeshttps://doi.org/10.1016/j.gde.2003.10.010openalex-snapshot
Role of evolutionary history on haplotype block structure in the human genome: implications for disease mapping
inferred← citeshttps://doi.org/10.1016/j.gene.2013.06.065openalex-snapshot
Genes alternations with exposure time of environmental factors
inferred← citeshttps://doi.org/10.1016/j.gene.2021.145418openalex-snapshot
Comparative analysis of chloroplast genomes of seven perennial Helianthus species
inferred← citeshttps://doi.org/10.1016/j.jhevol.2014.08.009openalex-snapshot
The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses
inferred← citeshttps://doi.org/10.1016/j.jhin.2013.11.007openalex-snapshot
Healthcare-associated outbreak of meticillin-resistant Staphylococcus aureus bacteraemia: role of a cryptic variant of an epidemic clone
inferred← citeshttps://doi.org/10.1016/j.jtbi.2015.05.019openalex-snapshot
Revisiting the time until fixation of a neutral mutant in a finite population – A coalescent theory approach
inferred← citeshttps://doi.org/10.1016/j.jtbi.2022.111186openalex-snapshot
The bounded coalescent model: Conditioning a genealogy on a minimum root date
inferred← citeshttps://doi.org/10.1016/j.meegid.2009.10.010openalex-snapshot
ABC: A useful Bayesian tool for the analysis of population data
inferred← citeshttps://doi.org/10.1016/j.meegid.2011.08.004openalex-snapshot
Review of genetic diversity in malaria vectors (Culicidae: Anophelinae)
inferred← citeshttps://doi.org/10.1016/j.meegid.2014.03.003openalex-snapshot
Hybridization between previously isolated ancestors may explain the persistence of exactly two ancient lineages in the genome of the oyster parasite Perkinsus marinus
inferred← citeshttps://doi.org/10.1016/j.meegid.2018.07.033openalex-snapshot
The diversity, evolution and epidemiology of plant viruses: A phylogenetic view
inferred← citeshttps://doi.org/10.1016/j.meegid.2020.104277openalex-snapshot
Evaluation of haplotype callers for next-generation sequencing of viruses
inferred← citeshttps://doi.org/10.1016/j.meegid.2020.104441openalex-snapshot
Assessing the evolutionary persistence of ecological relationships: A review and preview
inferred← citeshttps://doi.org/10.1016/j.mito.2015.04.001openalex-snapshot
Mitochondrial DNA haplogroup phylogeny of the dog: Proposal for a cladistic nomenclature
inferred← citeshttps://doi.org/10.1016/j.pbi.2008.02.009openalex-snapshot
Demographic processes shaping genetic variation
inferred← citeshttps://doi.org/10.1016/j.pmpp.2025.102803openalex-snapshot
Gene genealogies reveal recent population expansion of cotton root rot incitant, Macrophomina phaseolina (Tassi) Goid in North-Western India
inferred← citeshttps://doi.org/10.1016/j.pt.2009.09.008openalex-snapshot
The dynamics of mutations associated with anti-malarial drug resistance in Plasmodium falciparum
inferred← citeshttps://doi.org/10.1016/j.sajb.2013.06.012openalex-snapshot
The promise of genomics for a “next generation” of advances in higher-level legume molecular systematics
inferred← citeshttps://doi.org/10.1016/j.tig.2006.06.005openalex-snapshot
Genomic insights into positive selection
inferred← citeshttps://doi.org/10.1016/j.tig.2007.02.001openalex-snapshot
DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics
inferred← citeshttps://doi.org/10.1016/j.tig.2007.08.009openalex-snapshot
Approaches for identifying targets of positive selection
inferred← citeshttps://doi.org/10.1016/j.tim.2010.03.009openalex-snapshot
Clanistics: a multi-level perspective for harvesting unrooted gene trees
inferred← citeshttps://doi.org/10.1016/j.tpb.2012.05.001openalex-snapshot
Multiple merger gene genealogies in two species: Monophyly, paraphyly, and polyphyly for two examples of Lambda coalescents
inferred← citeshttps://doi.org/10.1016/j.tpb.2017.03.002openalex-snapshot
A non-zero variance of Tajima’s estimator for two sequences even for infinitely many unlinked loci
inferred← citeshttps://doi.org/10.1016/j.tpb.2020.06.001openalex-snapshot
Maximum likelihood estimators for scaled mutation rates in an equilibrium mutation–drift model
inferred← citeshttps://doi.org/10.1016/j.tpb.2024.06.004openalex-snapshot
The coalescent in finite populations with arbitrary, fixed structure
inferred← citeshttps://doi.org/10.1016/j.tree.2005.01.001openalex-snapshot
Tackling the population genetics of clonal and partially clonal organisms
inferred← citeshttps://doi.org/10.1016/j.tree.2006.11.012openalex-snapshot
Parasites: proxies for host genealogy and ecology?
inferred← citeshttps://doi.org/10.1016/j.tree.2008.06.010openalex-snapshot
Phylogeographic insights into cryptic glacial refugia
inferred← citeshttps://doi.org/10.1016/j.ttbdis.2020.101496openalex-snapshot
Reporting of New tick-borne encephalitis virus strains isolated in Eastern Siberia (Russia) in 1960-2011 and explaining them in an evolutionary context using Bayesian phylogenetic inference
inferred← citeshttps://doi.org/10.1016/j.ympev.2004.07.015openalex-snapshot
Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.09.012openalex-snapshot
Molecular evidence for a species complex in the patagonian lizard Liolaemus bibronii and phylogeography of the closely related Liolaemus gracilis (Squamata: Liolaemini)
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.11.031openalex-snapshot
Phylogenetic relationships and phylogeography of Hynobius tokyoensis (Amphibia: Caudata) using complete sequences of cytochrome b and control region genes of mitochondrial DNA
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.03.009openalex-snapshot
Diversification of Lupinus (Leguminosae) in the western New World: Derived evolution of perennial life history and colonization of montane habitats
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.03.014openalex-snapshot
Speciation of a tropical fungal species pair following transoceanic dispersal
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.06.007openalex-snapshot
Spatial pattern of nucleotide polymorphism indicates molecular adaptation in the bryophyte Sphagnum fimbriatum
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.07.016openalex-snapshot
Bayesian hypothesis testing supports long-distance Pleistocene migrations in a European high mountain plant (Androsace vitaliana, Primulaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.11.002openalex-snapshot
Phylogeny and phylogeography of the sword-tailed newt, Cynops ensicauda (Amphibia: Caudata), as revealed by nucleotide sequences of mitochondrial DNA
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.01.005openalex-snapshot
Reconciling phylogeography and ecological niche models for New Zealand beetles: Looking beyond glacial refugia
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.03.012openalex-snapshot
Sorting through the chaff, nDNA gene trees for phylogenetic inference and hybrid identification of annual sunflowers (Helianthus sect. Helianthus)
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.07.019openalex-snapshot
Phylogeny and biogeography of the Anderson’s crocodile newt, Echinotriton andersoni (Amphibia: Caudata), as revealed by mitochondrial DNA sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.07.031openalex-snapshot
Multi-locus species tree for the Amazonian peacock basses (Cichlidae: Cichla): Emergent phylogenetic signal despite limited nuclear variation
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.05.003openalex-snapshot
Multi-locus DNA sequence variation in a complex of four leaf beetle species with parapatric distributions: Mitochondrial and nuclear introgressions reveal recent hybridization
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.11.003openalex-snapshot
Deep phylogenetic incongruence in the angiosperm clade Rosidae
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.07.026openalex-snapshot
ddRAD-seq phylogenetics based on nucleotide, indel, and presence–absence polymorphisms: Analyses of two avian genera with contrasting histories
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.10.027openalex-snapshot
Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.11.022openalex-snapshot
Evolutionary trends in the distylous genus Pulmonaria (Boraginaceae): Evidence of ancient hybridization and current interspecific gene flow
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.12.015openalex-snapshot
Nuclear phylogenomics of the palm subfamily Arecoideae (Arecaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2016.07.011openalex-snapshot
Integrating multiple evidences in taxonomy: species diversity and phylogeny of mustached bats (Mormoopidae: Pteronotus)
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.04.009openalex-snapshot
Gene tree discordance and coalescent methods support ancient intergeneric hybridisation between Dasymaschalon and Friesodielsia (Annonaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107483openalex-snapshot
A road map for phylogenetic models of species trees
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108605openalex-snapshot
Evolutionary relationships and diversification of Euphorbia austroanatolica and E. rhytidosperma (Euphorbiaceae), narrow endemics of the Taurus Mountains in the eastern Mediterranean biodiversity hotspot
inferred← citeshttps://doi.org/10.1016/s0040-5809(03)00010-8openalex-snapshot
Estimating change rates of genetic markers using serial samples: applications to the transposon IS6110 in Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1016/s0169-5347(03)00018-1openalex-snapshot
The utility of single nucleotide polymorphisms in inferences of population history
inferred← citeshttps://doi.org/10.1016/s0378-1097(02)00854-6openalex-snapshot
Genetic diversity and models of viral evolution for the hepatitis C virus
inferred← citeshttps://doi.org/10.1016/s1874-5334(04)80005-4openalex-snapshot
Inferring Process from Pattern in Fungal Population Genetics
inferred← citeshttps://doi.org/10.1017/9781139013826.002openalex-snapshot
Ancient DNA
inferred← citeshttps://doi.org/10.1017/9781316146040openalex-snapshot
Empires and Exchanges in Eurasian Late Antiquity
inferred← citeshttps://doi.org/10.1017/9781316146040.001openalex-snapshot
Preface and Acknowledgments
inferred← citeshttps://doi.org/10.1017/9781316146040.002openalex-snapshot
Maps
inferred← citeshttps://doi.org/10.1017/9781316146040.003openalex-snapshot
Introduction
inferred← citeshttps://doi.org/10.1017/9781316146040.004openalex-snapshot
How the Steppes Became Byzantine
inferred← citeshttps://doi.org/10.1017/9781316146040.005openalex-snapshot
The Relations between China and the Steppe
inferred← citeshttps://doi.org/10.1017/9781316146040.006openalex-snapshot
Sasanian Iran and the Projection of Power in Late Antique Eurasia
inferred← citeshttps://doi.org/10.1017/9781316146040.007openalex-snapshot
Trade and Exchanges along the Silk and Steppe Routes in Late Antique Eurasia
inferred← citeshttps://doi.org/10.1017/9781316146040.008openalex-snapshot
Sogdian Merchants and Sogdian Culture on the Silk Road
inferred← citeshttps://doi.org/10.1017/9781316146040.009openalex-snapshot
“Charismatic” Goods
inferred← citeshttps://doi.org/10.1017/9781316146040.010openalex-snapshot
The Synthesis of the Tang Dynasty
inferred← citeshttps://doi.org/10.1017/9781316146040.011openalex-snapshot
Central Asia in the Late Roman Mental Map, Second to Sixth Centuries
inferred← citeshttps://doi.org/10.1017/9781316146040.012openalex-snapshot
Genetic History and Migrations in Western Eurasia, 500–1000
inferred← citeshttps://doi.org/10.1017/9781316146040.013openalex-snapshot
Northern Invaders
inferred← citeshttps://doi.org/10.1017/9781316146040.014openalex-snapshot
Chinese and Inner Asian Perspectives on the History of the Northern Dynasties (386–589) in Chinese Historiography
inferred← citeshttps://doi.org/10.1017/9781316146040.015openalex-snapshot
Xiongnu and Huns
inferred← citeshttps://doi.org/10.1017/9781316146040.016openalex-snapshot
Ethnicity and Empire in the Western Eurasian Steppes
inferred← citeshttps://doi.org/10.1017/9781316146040.017openalex-snapshot
The Languages of Christianity on the Silk Roads and the Transmission of Mediterranean Culture into Central Asia
inferred← citeshttps://doi.org/10.1017/9781316146040.018openalex-snapshot
The Spread of Buddhist Culture to China between the Third and Seventh Centuries
inferred← citeshttps://doi.org/10.1017/9781316146040.019openalex-snapshot
The Circulation of Astrological Lore and Its Political Use BETWEEN the Roman East, Sasanian Iran, Central Asia, India, and the Türks
inferred← citeshttps://doi.org/10.1017/9781316146040.020openalex-snapshot
Luminous Markers
inferred← citeshttps://doi.org/10.1017/9781316146040.021openalex-snapshot
Byzantium’s Eurasian Policy in the Age of the Türk Empire
inferred← citeshttps://doi.org/10.1017/9781316146040.022openalex-snapshot
Sasanian Iran and Its Northeastern Frontier
inferred← citeshttps://doi.org/10.1017/9781316146040.023openalex-snapshot
Infrastructures of Legitimacy in Inner Asia
inferred← citeshttps://doi.org/10.1017/9781316146040.024openalex-snapshot
The Stateless Nomads of Central Eurasia
inferred← citeshttps://doi.org/10.1017/9781316146040.025openalex-snapshot
Aspects of Elite Representation among the Sixth- and Seventh-Century Türks
inferred← citeshttps://doi.org/10.1017/9781316146040.026openalex-snapshot
Patterns of Roman Diplomacy with Iran and the Steppe Peoples
inferred← citeshttps://doi.org/10.1017/9781316146040.027openalex-snapshot
Collapse of a Eurasian Hybrid
inferred← citeshttps://doi.org/10.1017/9781316146040.028openalex-snapshot
Ideological Interweaving in Eastern Eurasia
inferred← citeshttps://doi.org/10.1017/9781316146040.029openalex-snapshot
Followers and Leaders in Northeastern Eurasia, ca. Seventh to Tenth Centuries
inferred← citeshttps://doi.org/10.1017/9781316146040.030openalex-snapshot
Epilogue
inferred← citeshttps://doi.org/10.1017/9781316146040.031openalex-snapshot
Glossary of Chinese Terms
inferred← citeshttps://doi.org/10.1017/9781316146040.032openalex-snapshot
Bibliography
inferred← citeshttps://doi.org/10.1017/9781316146040.033openalex-snapshot
Index
inferred← citeshttps://doi.org/10.1017/cbo9780511543555.004openalex-snapshot
Population genetics and disease
inferred← citeshttps://doi.org/10.1017/cbo9780511754807.012openalex-snapshot
Bryophyte species and speciation
inferred← citeshttps://doi.org/10.1017/cbo9780511777592.014openalex-snapshot
Evolutionary toxicology
inferred← citeshttps://doi.org/10.1017/cbo9781139167222.007openalex-snapshot
Molecular Markers in Anthropological Genetic Studies
inferred← citeshttps://doi.org/10.1017/cbo9781139167222.013openalex-snapshot
Human Origins Within and Out of Africa
inferred← citeshttps://doi.org/10.1017/ehs.2020.7openalex-snapshot
Japan considered from the hypothesis of farmer/language spread
inferred← citeshttps://doi.org/10.1017/s0024282909990259openalex-snapshot
Generation time estimated to be 25–30 years in Cliostomum corrugatum (Ach.) Fr.
inferred← citeshttps://doi.org/10.1017/s0953756204001790openalex-snapshot
Molecular evidence supports the distinction between Xanthoria parietina and X. aureola (Teloschistaceae, lichenized Ascomycota)
inferred← citeshttps://doi.org/10.1023/a:1024473620792openalex-snapshot
Molecular techniques in phytoplankton research: from allozyme electrophoresis to genomics
inferred← citeshttps://doi.org/10.1029/178gm13openalex-snapshot
Processes and Interactions in Macrofaunal Assemblages at Hydrothermal Vents: A Modeling Perspective
inferred← citeshttps://doi.org/10.1038/hdy.2009.154openalex-snapshot
Host-associated divergence and incipient speciation in the yucca moth Prodoxus coloradensis (Lepidoptera: Prodoxidae) on three species of host plants
inferred← citeshttps://doi.org/10.1038/hdy.2010.161openalex-snapshot
Evolution of adaptive diversity and genetic connectivity in Arctic charr (Salvelinus alpinus) in Iceland
inferred← citeshttps://doi.org/10.1038/hdy.2010.58openalex-snapshot
Mitochondrial DNA variation in the malaria vector Anopheles minimus across China, Thailand and Vietnam: evolutionary hypothesis, population structure and population history
inferred← citeshttps://doi.org/10.1038/hdy.2014.9openalex-snapshot
Distinguishing the effects of selection from demographic history in the genetic variation of two sister passerines based on mitochondrial–nuclear comparison
inferred← citeshttps://doi.org/10.1038/ng.3617openalex-snapshot
Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism
inferred← citeshttps://doi.org/10.1038/npg.els.0005458openalex-snapshot
Coalescent Theory
inferred← citeshttps://doi.org/10.1038/nrg1112openalex-snapshot
The study of structured populations — new hope for a difficult and divided science
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