On the public citation graph

Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism

https://doi.org/10.1038/ng.3617
0 signed · 261 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/9780470015902.a0020833openalex-snapshot
Inferring the Process of Human–Chimpanzee Speciation
inferredcites →https://doi.org/10.1002/9780470015902.a0020833.pub2openalex-snapshot
Inferring the Process of Human–Chimpanzee Speciation
inferredcites →https://doi.org/10.1002/bies.201500149openalex-snapshot
How reticulated are species?
inferredcites →https://doi.org/10.1007/s101440200025openalex-snapshot
Ecology meets molecular genetics in Arabidopsis
inferredcites →https://doi.org/10.1016/0031-9422(80)85004-7openalex-snapshot
Deviations from michaelis-menten behaviour of plant glutamate dehydrogenase with ammonium as variable substrate
inferredcites →https://doi.org/10.1016/j.ajhg.2011.09.005openalex-snapshot
Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania
inferredcites →https://doi.org/10.1016/j.cell.2016.05.063openalex-snapshot
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
inferredcites →https://doi.org/10.1016/j.jtbi.2009.07.018openalex-snapshot
On incomplete sampling under birth–death models and connections to the sampling-based coalescent
inferredcites →https://doi.org/10.1038/nature11968openalex-snapshot
Patterns of population epigenomic diversity
inferredcites →https://doi.org/10.1038/nature14181openalex-snapshot
Evolution of Darwin’s finches and their beaks revealed by genome sequencing
inferredcites →https://doi.org/10.1038/ng.2678openalex-snapshot
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/ng.807openalex-snapshot
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
inferredcites →https://doi.org/10.1038/ng.911openalex-snapshot
Whole-genome sequencing of multiple Arabidopsis thaliana populations
inferredcites →https://doi.org/10.1038/nrg795openalex-snapshot
Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
inferredcites →https://doi.org/10.1073/pnas.0809297106openalex-snapshot
Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals
inferredcites →https://doi.org/10.1073/pnas.1000675107openalex-snapshot
A domain swap approach reveals a role of the plant wall-associated kinase 1 (WAK1) as a receptor of oligogalacturonides
inferredcites →https://doi.org/10.1073/pnas.1104212108openalex-snapshot
Arabidopsis hybrid speciation processes
inferredcites →https://doi.org/10.1073/pnas.1412627111openalex-snapshot
Speciation with gene flow in equids despite extensive chromosomal plasticity
inferredcites →https://doi.org/10.1073/pnas.87.24.9732openalex-snapshot
Polymorphism at the self-incompatibility locus in Solanaceae predates speciation.
inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot
APE: Analyses of Phylogenetics and Evolution in R language
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq228openalex-snapshot
DendroPy: a Python library for phylogenetic computing
inferredcites →https://doi.org/10.1093/bioinformatics/bts315openalex-snapshot
Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/genetics/123.3.585openalex-snapshot
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
inferredcites →https://doi.org/10.1093/genetics/148.3.1325openalex-snapshot
Fixation Indices in Subdivided Populations
inferredcites →https://doi.org/10.1093/genetics/154.2.923openalex-snapshot
Linkage Disequilibrium, Gene Trees and Selfing: An Ancestral Recombination Graph With Partial Self-Fertilization
inferredcites →https://doi.org/10.1093/molbev/msl042openalex-snapshot
The Transition to Self-Compatibility in Arabidopsis thaliana and Evolution within S-Haplotypes over 10 Myr
inferredcites →https://doi.org/10.1093/molbev/msn172openalex-snapshot
Subdivision in an Ancestral Species Creates Asymmetry in Gene Trees
inferredcites →https://doi.org/10.1093/molbev/msq166openalex-snapshot
Mammalian Evolution May not Be Strictly Bifurcating
inferredcites →https://doi.org/10.1093/molbev/msr048openalex-snapshot
Testing for Ancient Admixture between Closely Related Populations
inferredcites →https://doi.org/10.1093/molbev/mss020openalex-snapshot
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/gkt1376openalex-snapshot
Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
inferredcites →https://doi.org/10.1101/gr.079509.108openalex-snapshot
Population genetic inference from genomic sequence variation
inferredcites →https://doi.org/10.1101/gr.094052.109openalex-snapshot
Fast model-based estimation of ancestry in unrelated individuals
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.130922.111openalex-snapshot
Genome sequencing reveals complex speciation in the Drosophila simulans clade
inferredcites →https://doi.org/10.1101/gr.159426.113openalex-snapshot
Genome-wide evidence for speciation with gene flow in Heliconius butterflies
inferredcites →https://doi.org/10.1104/pp.108.132787openalex-snapshot
Arabidopsis Protein Kinases GRIK1 and GRIK2 Specifically Activate SnRK1 by Phosphorylating Its Activation Loop
inferredcites →https://doi.org/10.1104/pp.111.181990openalex-snapshot
Genome-Wide Comparison of Nucleotide-Binding Site-Leucine-Rich Repeat-Encoding Genes in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.107.051375openalex-snapshot
Roles of Arabidopsis Cyclin-Dependent Kinase C Complexes in Cauliflower Mosaic Virus Infection, Plant Growth, and Development
inferredcites →https://doi.org/10.1105/tpc.15.00482openalex-snapshot
A Time-Calibrated Road Map of Brassicaceae Species Radiation and Evolutionary History
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04329.xopenalex-snapshot
The allopolyploidArabidopsis kamchaticaoriginated from multiple individuals ofArabidopsis lyrataandArabidopsis halleri
inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03556.xopenalex-snapshot
A novel nucleocytoplasmic traffic GTPase identified as a functional target of the bipartite geminivirus nuclear shuttle protein
inferredcites →https://doi.org/10.1111/j.1469-8137.2008.02748.xopenalex-snapshot
Molecular mechanisms of metal hyperaccumulation in plants
inferredcites →https://doi.org/10.1111/j.1600-0684.1993.tb00637.xopenalex-snapshot
Trans‐specific Mhc polymorphism and the origin of species in primates
inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02832.xopenalex-snapshot
msABC: a modification of Hudson’s ms to facilitate multi‐locus ABC analysis
inferredcites →https://doi.org/10.1111/mec.12682openalex-snapshot
A recent local sweep at the PHYA locus in the N orthern E uropean S piterstulen population of Arabidopsis lyrata
inferredcites →https://doi.org/10.1126/science.1188021openalex-snapshot
A Draft Sequence of the Neandertal Genome
inferredcites →https://doi.org/10.1126/science.1234070openalex-snapshot
Multiple Instances of Ancient Balancing Selection Shared Between Humans and Chimpanzees
inferredcites →https://doi.org/10.1126/science.1258524openalex-snapshot
Extensive introgression in a malaria vector species complex revealed by phylogenomics
inferredcites →https://doi.org/10.1146/annurev-arplant-042809-112156openalex-snapshot
Metal Hyperaccumulation in Plants
inferredcites →https://doi.org/10.1146/annurev-ecolsys-112414-054249openalex-snapshot
Evolution of Selfing: Recurrent Patterns in Molecular Adaptation
inferredcites →https://doi.org/10.1186/1471-2148-14-82openalex-snapshot
Selecting optimal partitioning schemes for phylogenomic datasets
inferredcites →https://doi.org/10.1186/preaccept-1775653123133997openalex-snapshot
Taming the wild: resolving the gene pools of non-model Arabidopsis lineages
inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot
ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1371/journal.pbio.0030196openalex-snapshot
The Pattern of Polymorphism in Arabidopsis thaliana
inferredcites →https://doi.org/10.1371/journal.pbio.0040088openalex-snapshot
Relaxed Phylogenetics and Dating with Confidence
inferredcites →https://doi.org/10.1371/journal.pbio.1002224openalex-snapshot
The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
inferredcites →https://doi.org/10.1371/journal.pbio.1002379openalex-snapshot
Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1003754openalex-snapshot
Genomic Identification of Founding Haplotypes Reveals the History of the Selfing Species Capsella rubella
inferredcites →https://doi.org/10.1534/genetics.104.029488openalex-snapshot
The Probability and Chromosomal Extent of trans-specific Polymorphism
inferredcites →https://doi.org/10.1534/genetics.106.064485openalex-snapshot
The Genetic Basis of Zinc Tolerance in the Metallophyte Arabidopsis halleri ssp. halleri (Brassicaceae): An Analysis of Quantitative Trait Loci
inferredcites →https://doi.org/10.1534/genetics.113.150029openalex-snapshot
Improving the Accuracy and Efficiency of Identity-by-Descent Detection in Population Data
inferredcites →https://doi.org/10.18942/apg.kj00004623241openalex-snapshot
Arabidopsis kamchatica (Fisch. ex DC.) K. Shimizu & Kudoh and A. kamchatica subsp. kawasakiana (Makino) K. Shimizu & Kudoh, New Combinations
inferredcites →https://doi.org/10.2307/3666887openalex-snapshot
Cardaminopsis suecica (fr.) Hiit., a Northern Amphidiploid species
inferredcites →https://doi.org/10.3732/ajb.1400024openalex-snapshot
Is gene flow the most important evolutionary force in plants?
inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10722-016-0467-zzenodo-depositor-declared
Solanum insanum L. (subgenus Leptostemonum Bitter, Solanaceae), the neglected wild progenitor of eggplant (S. melongena L.): a review of taxonomy, characteristics and uses aimed at its enhancement for improved eggplant breeding
inferred← citeshttps://doi.org/10.1016/j.phytochem.2021.112668zenodo-depositor-declared
Comparison of glucosinolate diversity in the crucifer tribe Cardamineae and the remaining order Brassicales highlights repetitive evolutionary loss and gain of biosynthetic steps
inferred← citeshttps://doi.org/10.1002/9781119409144.ch115openalex-snapshot
Patterns of polymorphism, recombination, and selection in Medicago truncatula
inferred← citeshttps://doi.org/10.1002/ajb2.1212openalex-snapshot
Autopolyploid lineage shows climatic niche expansion but not divergence in Arabidopsis arenosa
inferred← citeshttps://doi.org/10.1002/ajb2.1442openalex-snapshot
Cold tolerance in the genus Arabidopsis
inferred← citeshttps://doi.org/10.1002/cpz1.876openalex-snapshot
Compare_Genomes: A Comparative Genomics Workflow to Streamline the Analysis of Evolutionary Divergence Across Eukaryotic Genomes
inferred← citeshttps://doi.org/10.1002/evl3.96openalex-snapshot
Bulk pollen sequencing reveals rapid evolution of segregation distortion in the male germline of Arabidopsis hybrids
inferred← citeshttps://doi.org/10.1007/978-1-0716-2561-3_15openalex-snapshot
Inference of Polyploid Origin and Inheritance Mode from Population Genomic Data
inferred← citeshttps://doi.org/10.1007/978-1-0716-2561-3_16openalex-snapshot
Population Genomic Analysis of Diploid-Autopolyploid Species
inferred← citeshttps://doi.org/10.1007/978-94-007-6167-4_637-1openalex-snapshot
Plant Genome Editing Governance
inferred← citeshttps://doi.org/10.1007/978-94-024-1179-9_637openalex-snapshot
Plant Genome Editing Governance
inferred← citeshttps://doi.org/10.1007/s00497-022-00451-6openalex-snapshot
Ancestral self-compatibility facilitates the establishment of allopolyploids in Brassicaceae
inferred← citeshttps://doi.org/10.1007/s10265-017-0982-9openalex-snapshot
Agrobacterium-mediated floral dip transformation of the model polyploid species Arabidopsis kamchatica
inferred← citeshttps://doi.org/10.1007/s11692-023-09612-5openalex-snapshot
Geographic Variation in Genomic Signals of Admixture Between Two Closely Related European Sepsid Fly Species
inferred← citeshttps://doi.org/10.1016/b978-0-12-819715-8.00005-7openalex-snapshot
Genome mapping tools: current research and future prospects
inferred← citeshttps://doi.org/10.1016/j.cell.2019.07.038openalex-snapshot
A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1016/j.cub.2023.05.003openalex-snapshot
Extreme genome diversity and cryptic speciation in a harmful algal-bloom-forming eukaryote
inferred← citeshttps://doi.org/10.1016/j.flora.2019.151477openalex-snapshot
The Eurasian steppe belt in time and space: Phylogeny and historical biogeography of the false flax (Camelina Crantz, Camelineae, Brassicaceae)
inferred← citeshttps://doi.org/10.1016/j.gene.2018.05.088openalex-snapshot
The Crambe abyssinica plastome: Brassicaceae phylogenomic analysis, evolution of RNA editing sites, hotspot and microsatellite characterization of the tribe Brassiceae
inferred← citeshttps://doi.org/10.1016/j.jgg.2023.08.004openalex-snapshot
Natural variation in the SVP contributes to the pleiotropic adaption of Arabidopsis thaliana across contrasted habitats
inferred← citeshttps://doi.org/10.1016/j.molp.2025.12.014openalex-snapshot
Evolutionary innovations and genetic diversity in angiosperm centromeres
inferred← citeshttps://doi.org/10.1016/j.pbi.2016.11.018openalex-snapshot
Genomic studies of adaptive evolution in outcrossing Arabidopsis species
inferred← citeshttps://doi.org/10.1016/j.pbi.2017.02.005openalex-snapshot
Using mustard genomes to explore the genetic basis of evolutionary change
inferred← citeshttps://doi.org/10.1016/j.pbi.2018.01.005openalex-snapshot
Polyploid Arabidopsis species originated around recent glaciation maxima
inferred← citeshttps://doi.org/10.1016/j.pld.2025.04.007openalex-snapshot
A complex interplay of genetic introgression and local adaptation during the evolutionary history of three closely related spruce species
inferred← citeshttps://doi.org/10.1016/j.ppees.2023.125760openalex-snapshot
The spatio-temporal diversification of SRK alleles in an Arabidopsis polyploid hybrid and introgression zone
inferred← citeshttps://doi.org/10.1016/j.tplants.2017.10.005openalex-snapshot
Database Taxonomics as Key to Modern Plant Biology
inferred← citeshttps://doi.org/10.1016/j.xplc.2020.100089openalex-snapshot
Variation Patterns of NLR Clusters in Arabidopsis thaliana Genomes
inferred← citeshttps://doi.org/10.1016/j.xplc.2025.101629openalex-snapshot
Prefoldin 3 promotes the turnover of WRKY70 and FHY3 to modulate UV-B–induced hypocotyl growth inhibition in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108222openalex-snapshot
Whole genome data confirm pervasive gene discordance in the evolutionary history of Coenonympha (Nymphalidae) butterflies
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108444openalex-snapshot
Phylogenomic incongruence in Castanopsis (Fagaceae) is primarily caused by gene flow rather than incomplete lineage sorting
inferred← citeshttps://doi.org/10.1038/ng.3980openalex-snapshot
Ancient hybridization and strong adaptation to viruses across African vervet monkey populations
inferred← citeshttps://doi.org/10.1038/s41437-019-0184-4openalex-snapshot
Genetic architecture of a plant adaptive trait: QTL mapping of intraspecific variation for tolerance to metal pollution in Arabidopsis halleri
inferred← citeshttps://doi.org/10.1038/s41437-019-0247-6openalex-snapshot
Structure is more robust than other clustering methods in simulated mixed-ploidy populations
inferred← citeshttps://doi.org/10.1038/s41437-026-00826-9openalex-snapshot
Seizure samples reveal complex evolutionary dynamics among Southeast Asian pangolins
inferred← citeshttps://doi.org/10.1038/s41467-018-05281-7openalex-snapshot
Gene expression drives the evolution of dominance
inferred← citeshttps://doi.org/10.1038/s41467-018-06108-1openalex-snapshot
Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica
inferred← citeshttps://doi.org/10.1038/s41467-019-13159-5openalex-snapshot
Interspecific introgression mediates adaptation to whole genome duplication
inferred← citeshttps://doi.org/10.1038/s41467-021-25256-5openalex-snapshot
Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles
inferred← citeshttps://doi.org/10.1038/s41467-022-28800-zopenalex-snapshot
Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages
inferred← citeshttps://doi.org/10.1038/s41467-022-35368-1openalex-snapshot
Recent speciation associated with range expansion and a shift to self-fertilization in North American Arabidopsis
inferred← citeshttps://doi.org/10.1038/s41467-023-43275-2openalex-snapshot
Dominance in self-compatibility between subgenomes of allopolyploid Arabidopsis kamchatica shown by transgenic restoration of self-incompatibility
inferred← citeshttps://doi.org/10.1038/s41477-019-0444-6openalex-snapshot
A stigmatic gene confers interspecies incompatibility in the Brassicaceae
inferred← citeshttps://doi.org/10.1038/s41559-019-0807-4openalex-snapshot
Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa
inferred← citeshttps://doi.org/10.1038/s41559-021-01523-yopenalex-snapshot
Concerted genomic and epigenomic changes accompany stabilization of Arabidopsis allopolyploids
inferred← citeshttps://doi.org/10.1038/s41559-021-01525-wopenalex-snapshot
Gradual evolution of allopolyploidy in Arabidopsis suecica
inferred← citeshttps://doi.org/10.1038/s41576-020-0269-1openalex-snapshot
Host–parasite co-evolution and its genomic signature
inferred← citeshttps://doi.org/10.1038/s41586-023-06062-zopenalex-snapshot
Cycles of satellite and transposon evolution in Arabidopsis centromeres
inferred← citeshttps://doi.org/10.1038/s41598-017-07891-5openalex-snapshot
Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis
inferred← citeshttps://doi.org/10.1038/s41598-017-08461-5openalex-snapshot
Field-based species identification of closely-related plants using real-time nanopore sequencing
inferred← citeshttps://doi.org/10.1038/s41598-021-03419-0openalex-snapshot
An integrative genomic and phenomic analysis to investigate the nature of plant species in Escallonia (Escalloniaceae)
inferred← citeshttps://doi.org/10.1073/pnas.1615123114openalex-snapshot
Endosperm-based hybridization barriers explain the pattern of gene flow between Arabidopsis lyrata and Arabidopsis arenosa in Central Europe
inferred← citeshttps://doi.org/10.1073/pnas.2022713118openalex-snapshot
Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives
inferred← citeshttps://doi.org/10.1073/pnas.2105431118openalex-snapshot
Evolutionary history and pan-genome dynamics of strawberry ( Fragaria spp.)
inferred← citeshttps://doi.org/10.1073/pnas.2220389120openalex-snapshot
Phylogenomic comparative methods: Accurate evolutionary inferences in the presence of gene tree discordance
inferred← citeshttps://doi.org/10.1093/aob/mcaa053openalex-snapshot
The Quaternary evolutionary history of Bristol rock cress (Arabis scabra, Brassicaceae), a Mediterranean element with an outpost in the north-western Atlantic region
inferred← citeshttps://doi.org/10.1093/aob/mcy237openalex-snapshot
Arabidopsis species deploy distinct strategies to cope with drought stress
inferred← citeshttps://doi.org/10.1093/auk/ukz046openalex-snapshot
Shallow genetic divergence and distinct phenotypic differences between two Andean hummingbirds: Speciation with gene flow?
inferred← citeshttps://doi.org/10.1093/botlinnean/box064openalex-snapshot
Range-wide genetic structure of Arabidopsis halleri (Brassicaceae): glacial persistence in multiple refugia and origin of the Northern Hemisphere disjunction
inferred← citeshttps://doi.org/10.1093/botlinnean/boz026openalex-snapshot
Population genomic evidence for radiative divergence of four Orychophragmus (Brassicaceae) species in eastern Asia
inferred← citeshttps://doi.org/10.1093/dnares/dsy005openalex-snapshot
Functional divergence of duplicate genes several million years after gene duplication in Arabidopsis
inferred← citeshttps://doi.org/10.1093/evlett/qraf013openalex-snapshot
Diverging Arabidopsis populations quickly accumulate pollen-acting genetic incompatibilities
inferred← citeshttps://doi.org/10.1093/g3journal/jkaf147openalex-snapshot
Local gene duplications drive extensive NLR copy number variation across multiple genotypes of Theobroma cacao
inferred← citeshttps://doi.org/10.1093/g3journal/jkag183openalex-snapshot
Copy number variation: a substrate for plant adaptation and stress response in Arabidopsis
inferred← citeshttps://doi.org/10.1093/gbe/evaa149openalex-snapshot
Biased Gene Retention in the Face of Introgression Obscures Species Relationships
inferred← citeshttps://doi.org/10.1093/gbe/evy227openalex-snapshot
Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana)
inferred← citeshttps://doi.org/10.1093/gbe/evy274openalex-snapshot
Genome Sequence of Jaltomata Addresses Rapid Reproductive Trait Evolution and Enhances Comparative Genomics in the Hyper-Diverse Solanaceae
inferred← citeshttps://doi.org/10.1093/genetics/iyab173openalex-snapshot
Phylogenomic approaches to detecting and characterizing introgression
inferred← citeshttps://doi.org/10.1093/genetics/iyac132openalex-snapshot
Rapid large-scale genomic introgression in Arabidopsis suecica via an autoallohexaploid bridge
inferred← citeshttps://doi.org/10.1093/hr/uhab050openalex-snapshot
Chloroplast phylogenomics in Camelina (Brassicaceae) reveals multiple origins of polyploid species and the maternal lineage of C. sativa
inferred← citeshttps://doi.org/10.1093/jxb/ery340openalex-snapshot
The plant model system Arabidopsis set into an evolutionary, systematic and spatio-temporal context
inferred← citeshttps://doi.org/10.1093/jxb/ery447openalex-snapshot
Linking genes with ecological strategies in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1093/molbev/msaa238openalex-snapshot
Tracing the Diploid Ancestry of the Cultivated Octoploid Strawberry
inferred← citeshttps://doi.org/10.1093/molbev/msab268openalex-snapshot
Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia
inferred← citeshttps://doi.org/10.1093/molbev/msac015openalex-snapshot
Approximate Bayesian Computation Untangles Signatures of Contemporary and Historical Hybridization between Two Endangered Species
inferred← citeshttps://doi.org/10.1093/molbev/msac122openalex-snapshot
Interactions Between Natural Selection and Recombination Shape the Genomic Landscape of Introgression
inferred← citeshttps://doi.org/10.1093/molbev/msad122openalex-snapshot
Transition to Self-compatibility Associated With Dominant S -allele in a Diploid Siberian Progenitor of Allotetraploid Arabidopsis kamchatica Revealed by Arabidopsis lyrata Genomes
inferred← citeshttps://doi.org/10.1093/molbev/msaf153openalex-snapshot
Multiple Autopolyploid Arabidopsis lyrata Populations Stabilized by Long-Range Adaptive Introgression Across Eurasia
inferred← citeshttps://doi.org/10.1093/molbev/msaf298openalex-snapshot
Whole-Genome Duplication Reshapes Adaptation: Autotetraploid Arabidopsis arenosa Leverages its High Genetic Variation to Compensate for Selection Constraints
inferred← citeshttps://doi.org/10.1093/molbev/msw197openalex-snapshot
Gene Tree Discordance Can Generate Patterns of Diminishing Convergence over Time
inferred← citeshttps://doi.org/10.1093/molbev/msw299openalex-snapshot
Genome sequencing reveals the origin of the allotetraploid Arabidopsis suecica
inferred← citeshttps://doi.org/10.1093/molbev/msx193openalex-snapshot
Genome-Wide Analysis of Colonization History and Concomitant Selection in Arabidopsis lyrata
inferred← citeshttps://doi.org/10.1093/molbev/msy166openalex-snapshot
sppIDer: A Species Identification Tool to Investigate Hybrid Genomes with High-Throughput Sequencing
inferred← citeshttps://doi.org/10.1093/molbev/msz294openalex-snapshot
Ancestral Hybridization Facilitated Species Diversification in the Lake Malawi Cichlid Fish Adaptive Radiation
inferred← citeshttps://doi.org/10.1093/nar/gkw893openalex-snapshot
CeNDR, the Caenorhabditis elegans natural diversity resource
inferred← citeshttps://doi.org/10.1093/ornithology/ukaa069openalex-snapshot
The genomic revolution and species delimitation in birds (and other organisms): Why phenotypes should not be overlooked
inferred← citeshttps://doi.org/10.1093/sysbio/syad009openalex-snapshot
Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences
inferred← citeshttps://doi.org/10.1093/sysbio/syag007openalex-snapshot
Unravelling Complex Hybrid and Polyploid Evolutionary Relationships Using Phylogenetic Placement of Homologous Gene Copies from Target Enrichment Data
inferred← citeshttps://doi.org/10.1093/sysbio/syx078openalex-snapshot
Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo Clade (Caryophyllales)
inferred← citeshttps://doi.org/10.1098/rstb.2018.0244openalex-snapshot
The perils of intralocus recombination for inferences of molecular convergence
inferred← citeshttps://doi.org/10.1098/rstb.2019.0544openalex-snapshot
Evolution of strong reproductive isolation in plants: broad-scale patterns and lessons from a perennial model group
inferred← citeshttps://doi.org/10.1098/rstb.2020.0510openalex-snapshot
The selfing syndrome and beyond: diverse evolutionary consequences of mating system transitions in plants
inferred← citeshttps://doi.org/10.1101/107656openalex-snapshot
Field-based species identification in eukaryotes using real-time nanopore sequencing
inferred← citeshttps://doi.org/10.1101/2020.03.11.985903openalex-snapshot
Genomic signals of admixture and reinforcement between two closely related species of European sepsid flies
inferred← citeshttps://doi.org/10.1101/2023.01.11.523565openalex-snapshot
Novel reassortments of variation underlie repeated adaptation to whole genome duplication in two outcrossing Arabidopsis species
inferred← citeshttps://doi.org/10.1101/2023.05.30.542816openalex-snapshot
Structural evidence for MADS-box type I family expansion seen in new assemblies of A. arenosa and A. lyrata
inferred← citeshttps://doi.org/10.1101/2024.04.16.589693openalex-snapshot
Balancing selection and the functional effects of shared polymorphism in cryptic Daphnia species
inferred← citeshttps://doi.org/10.1101/2024.08.27.609292openalex-snapshot
Multiple polyploidizations in Arabidopsis lyrata stabilized by long-range adaptive introgression across Eurasia
inferred← citeshttps://doi.org/10.1101/2025.08.15.670553openalex-snapshot
Copy Number Variation: A Substrate for Plant Adaptation and Stress Response in Arabidopsis
inferred← citeshttps://doi.org/10.1101/249755openalex-snapshot
Shallow evolutionary divergence between two Andean hummingbirds: Speciation with gene flow?
inferred← citeshttps://doi.org/10.1101/495812openalex-snapshot
Genomic footprints of repeated evolution of CAM photosynthesis in tillandsioid bromeliads
inferred← citeshttps://doi.org/10.1101/593699openalex-snapshot
Whole genome duplication potentiates inter-specific hybridisation and niche shifts in Australian burrowing frogs Neobatrachus
inferred← citeshttps://doi.org/10.1105/tpc.18.00606openalex-snapshot
Breaking Free: The Genomics of Allopolyploidy-Facilitated Niche Expansion in White Clover
inferred← citeshttps://doi.org/10.1111/1755-0998.12604openalex-snapshot
Genome assembly and annotation of Arabidopsis halleri , a model for heavy metal hyperaccumulation and evolutionary ecology
inferred← citeshttps://doi.org/10.1111/1755-0998.12945openalex-snapshot
A dedicated target capture approach reveals variable genetic markers across micro‐ and macro‐evolutionary time scales in palms
inferred← citeshttps://doi.org/10.1111/1755-0998.13490openalex-snapshot
Arabis alpina: A perennial model plant for ecological genomics and life‐history evolution
inferred← citeshttps://doi.org/10.1111/dgd.12578openalex-snapshot
Plant adaptation and speciation studied by population genomic approaches
inferred← citeshttps://doi.org/10.1111/jeb.14122openalex-snapshot
Intraspecific variation in reproductive barriers between two closely related Arabidopsis sister species
inferred← citeshttps://doi.org/10.1111/jipb.13157openalex-snapshot
Balancing selection and wild gene pool contribute to resistance in global rice germplasm against planthopper
inferred← citeshttps://doi.org/10.1111/jse.12461openalex-snapshot
Analyses of genome‐scale variation reveal divergence of two Sinalliaria species (Brassicaceae) with continuous but limited gene flow
inferred← citeshttps://doi.org/10.1111/jse.12725openalex-snapshot
Species delimitation of North AmericanNyssaspecies
inferred← citeshttps://doi.org/10.1111/mec.14110openalex-snapshot
Molecular ecology studies of species radiations: current research gaps, opportunities and challenges
inferred← citeshttps://doi.org/10.1111/mec.14280openalex-snapshot
Long‐term balancing selection on chromosomal variants associated with crypsis in a stick insect
inferred← citeshttps://doi.org/10.1111/mec.14707openalex-snapshot
Evolution of interspecies unilateral incompatibility in the relatives of Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1111/mec.14780openalex-snapshot
Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance
inferred← citeshttps://doi.org/10.1111/mec.14795openalex-snapshot
Detecting introgression despite phylogenetic uncertainty: The case of the South American siskins
inferred← citeshttps://doi.org/10.1111/mec.14869openalex-snapshot
RADseq data reveal ancient, but not pervasive, introgression between Californian tree and scrub oak species (Quercussect.Quercus: Fagaceae)
inferred← citeshttps://doi.org/10.1111/mec.14930openalex-snapshot
The genomic basis of adaptation to calcareous and siliceous soils in Arabidopsis lyrata
inferred← citeshttps://doi.org/10.1111/mec.15194openalex-snapshot
Strengths and potential pitfalls of hay transfer for ecological restoration revealed by RAD‐seq analysis in floodplain Arabis species
inferred← citeshttps://doi.org/10.1111/mec.15338openalex-snapshot
Lineage‐specific adaptation to climate involves flowering time in North American Arabidopsis lyrata
inferred← citeshttps://doi.org/10.1111/mec.17624openalex-snapshot
Recent Origin of a Range‐Restricted Species With Subsequent Introgression in its Widespread Congener in the Phyteuma spicatum Group (Campanulaceae)
inferred← citeshttps://doi.org/10.1111/mec.17632openalex-snapshot
Trans‐Specific Polymorphisms Between Cryptic Daphnia Species Affect Fitness and Behavior
inferred← citeshttps://doi.org/10.1111/mec.17786openalex-snapshot
Genome Analyses Reveal Diverse Riverine Genetic Contributions to the Lake Malawi Cichlid Radiation
inferred← citeshttps://doi.org/10.1111/nph.14607openalex-snapshot
Rapid radiations of both kiwifruit hybrid lineages and their parents shed light on a two‐layer mode of species diversification
inferred← citeshttps://doi.org/10.1111/nph.14860openalex-snapshot
The Sphagnome Project: enabling ecological and evolutionary insights through a genus‐level sequencing project
inferred← citeshttps://doi.org/10.1111/nph.14948openalex-snapshot
Contrasting cadmium resistance strategies in two metallicolous populations of Arabidopsis halleri
inferred← citeshttps://doi.org/10.1111/nph.15590openalex-snapshot
Trans‐lineage polymorphism and nonbifurcating diversification of the genus Picea
inferred← citeshttps://doi.org/10.1111/nph.15682openalex-snapshot
On the postglacial spread of human commensal Arabidopsis thaliana : journey to the East
inferred← citeshttps://doi.org/10.1111/nph.16215openalex-snapshot
Phylogenomics of the genusPopulusreveals extensive interspecific gene flow and balancing selection
inferred← citeshttps://doi.org/10.1111/nph.19451openalex-snapshot
The self‐compatibility is acquired after polyploidization: a case study of Brassica napus self‐incompatible trilinear hybrid breeding system
inferred← citeshttps://doi.org/10.1111/nph.20095openalex-snapshot
Homoeologous crossovers are distally biased and underlie genomic instability in first‐generation neo‐allopolyploid Arabidopsis suecica
inferred← citeshttps://doi.org/10.1111/nph.70082openalex-snapshot
Repeated colonisation of alpine habitats by Arabidopsis arenosa involved parallel adjustments of leaf cuticle traits
inferred← citeshttps://doi.org/10.1111/nph.70689openalex-snapshot
Diploid origins and early genome stabilization in the allotetraploid Arabidopsis suecica
inferred← citeshttps://doi.org/10.1111/nph.71167openalex-snapshot
The abundance of pollen coat small signaling proteins shows limited convergence between independent selfing transitions in Arabidopsis and Capsella
inferred← citeshttps://doi.org/10.1111/nph.71179openalex-snapshot
Somatic genome‐doubling is the most parsimonious route to allopolyploidy
inferred← citeshttps://doi.org/10.1111/pce.13847openalex-snapshot
Genomic footprints of repeated evolution of CAM photosynthesis in a Neotropical species radiation
inferred← citeshttps://doi.org/10.1111/pce.13883openalex-snapshot
Different strategies of Cd tolerance and accumulation in Arabidopsis halleri and Arabidopsis arenosa
inferred← citeshttps://doi.org/10.1111/tpj.14061openalex-snapshot
Diverse paths to hybrid incompatibility in Arabidopsis
inferred← citeshttps://doi.org/10.1111/tpj.14631openalex-snapshot
The Earth BioGenome project: opportunities and challenges for plant genomics and conservation
inferred← citeshttps://doi.org/10.1111/tpj.15650openalex-snapshot
Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
inferred← citeshttps://doi.org/10.1111/tpj.16401openalex-snapshot
Structural evidence for MADS ‐box type I family expansion seen in new assemblies of Arabidopsis arenosa and A. lyrata
inferred← citeshttps://doi.org/10.1126/sciadv.aav9188openalex-snapshot
Pervasive hybridizations in the history of wheat relatives
inferred← citeshttps://doi.org/10.1126/science.adx1616openalex-snapshot
Multiscale pangenome graphs empower the genomic dissection of mixed-ploidy sugarcane species
inferred← citeshttps://doi.org/10.1146/annurev-animal-061220-023129openalex-snapshot
Genetic Variation and Hybridization in Evolutionary Radiations of Cichlid Fishes
inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-102723-053810openalex-snapshot
The Molecular Basis of Adaptation to Climatic Factors and Range Change in Plants
inferred← citeshttps://doi.org/10.1186/s12859-017-1911-6openalex-snapshot
Reference-guided de novo assembly approach improves genome reconstruction for related species
inferred← citeshttps://doi.org/10.1186/s12862-018-1160-yopenalex-snapshot
Phylogenomics and barcoding of Panax: toward the identification of ginseng species
inferred← citeshttps://doi.org/10.1186/s12864-017-3555-3openalex-snapshot
Plastome phylogeny and early diversification of Brassicaceae
inferred← citeshttps://doi.org/10.1186/s12864-017-4220-6openalex-snapshot
An Arabidopsis introgression zone studied at high spatio-temporal resolution: interglacial and multiple genetic contact exemplified using whole nuclear and plastid genomes
inferred← citeshttps://doi.org/10.1186/s12864-018-4614-0openalex-snapshot
Correction to: An Arabidopsis introgression zone studied at high spatio-temporal resolution: interglacial and multiple genetic contact exemplified using whole nuclear and plastid genomes
inferred← citeshttps://doi.org/10.1186/s12864-018-4806-7openalex-snapshot
Restriction associated DNA-genotyping at multiple spatial scales in Arabidopsis lyrata reveals signatures of pathogen-mediated selection
inferred← citeshttps://doi.org/10.1186/s12864-024-11073-9openalex-snapshot
A catalog of gene editing sites and genetic variations in editing sites in model organisms
inferred← citeshttps://doi.org/10.1186/s13059-016-1127-5openalex-snapshot
Methylome evolution in plants
inferred← citeshttps://doi.org/10.1186/s13059-017-1281-4openalex-snapshot
Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid
inferred← citeshttps://doi.org/10.1186/s13059-017-1342-8openalex-snapshot
Long-term balancing selection contributes to adaptation in Arabidopsis and its relatives
inferred← citeshttps://doi.org/10.1186/s13059-017-1365-1openalex-snapshot
Balancing selection and trans-specific polymorphisms
inferred← citeshttps://doi.org/10.1271/kagakutoseibutsu.56.317openalex-snapshot
Evolutionary Dynamics of Plant Populations Studied by Population Genomics: Genomics of Adaptation
inferred← citeshttps://doi.org/10.1360/n052018-00202openalex-snapshot
Adaptive evolution of Arabidopsis and its relatives
inferred← citeshttps://doi.org/10.1371/journal.pgen.1006919openalex-snapshot
Adaptive introgression from distant Caribbean islands contributed to the diversification of a microendemic adaptive radiation of trophic specialist pupfishes
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007741openalex-snapshot
Deleterious variation shapes the genomic landscape of introgression
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007949openalex-snapshot
Parental legacy, demography, and admixture influenced the evolution of the two subgenomes of the tetraploid Capsella bursa-pastoris (Brassicaceae)
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008769openalex-snapshot
Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus
inferred← citeshttps://doi.org/10.1371/journal.pgen.1011521openalex-snapshot
Polyploids broadly generate novel haplotypes from trans-specific variation in Arabidopsis arenosa and Arabidopsis lyrata
inferred← citeshttps://doi.org/10.1371/journal.pone.0178459openalex-snapshot
Peripatric speciation in an endemic Macaronesian plant after recent divergence from a widespread relative
inferred← citeshttps://doi.org/10.1534/g3.117.043984openalex-snapshot
Evidence for Adaptive Introgression of Disease Resistance Genes Among Closely Related Arabidopsis Species
inferred← citeshttps://doi.org/10.1534/genetics.119.302869openalex-snapshot
From Drift to Draft: How Much Do Beneficial Mutations Actually Contribute to Predictions of Ohta’s Slightly Deleterious Model of Molecular Evolution?
inferred← citeshttps://doi.org/10.1534/genetics.120.303351openalex-snapshot
Base-Pairing Requirements for Small RNA-Mediated Gene Silencing of Recessive Self-Incompatibility Alleles in Arabidopsis halleri
inferred← citeshttps://doi.org/10.17520/biods.2017097openalex-snapshot
Approaches used to detect and test hybridization: combining phylogenetic and population genetic analyses
inferred← citeshttps://doi.org/10.3389/fevo.2018.00114openalex-snapshot
Adding Complexity to Complexity: Gene Family Evolution in Polyploids
inferred← citeshttps://doi.org/10.3389/fgene.2025.1623517openalex-snapshot
The first complete mitochondrial genome of Biotodoma cupido (Cichiliformes: Cichlidae) and its phylogeny
inferred← citeshttps://doi.org/10.3389/fpls.2016.01826openalex-snapshot
Species Delimitation and Interspecific Relationships of the Genus Orychophragmus (Brassicaceae) Inferred from Whole Chloroplast Genomes
inferred← citeshttps://doi.org/10.3389/fpls.2016.01955openalex-snapshot
Completion of the Chloroplast Genomes of Five Chinese Juglans and Their Contribution to Chloroplast Phylogeny
inferred← citeshttps://doi.org/10.3389/fpls.2017.01488openalex-snapshot
Molecular Resources from Transcriptomes in the Brassicaceae Family
inferred← citeshttps://doi.org/10.3389/fpls.2019.01553openalex-snapshot
A Phylogenomic Analysis of the Floral Transcriptomes of Sexually Deceptive and Rewarding European Orchids, Ophrys and Gymnadenia
inferred← citeshttps://doi.org/10.3390/genes10090691openalex-snapshot
Population Genetics of the Highly Polymorphic RPP8 Gene Family
inferred← citeshttps://doi.org/10.3390/plants11212993openalex-snapshot
Interspecific Gene Flow and Selective Sweeps in Picea wilsonii, P. neoveitchii and P. likiangensis
inferred← citeshttps://doi.org/10.3410/f.737692977.793573305openalex-snapshot
Faculty Opinions recommendation of Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, Brassicaceae).
inferred← citeshttps://doi.org/10.3897/phytokeys.196.77940openalex-snapshot
Taxonomy of Dianthus (Caryophyllaceae) – overall phylogenetic relationships and assessment of species diversity based on a first comprehensive checklist of the genus
inferred← citeshttps://doi.org/10.64898/2026.03.02.709016openalex-snapshot
A Global Genomic Resource for Outcrossing Arabidopsis lyrata and Arabidopsis arenosa
inferred← citeshttps://doi.org/10.70675/d0f17122z28f0z4f3bzb658z0ac2763274f1openalex-snapshot
Mécanismes et conséquences évolutives de la dominance au locus d'auto-incompatibilité chez Arabidopsis
inferred← citeshttps://doi.org/10.7554/elife.108238openalex-snapshot
The genetic control of rapid genome content divergence in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.7554/elife.108238.1openalex-snapshot
The genetic control of rapid genome content divergence in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.7554/elife.108238.3openalex-snapshot
The genetic control of rapid genome content divergence in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.7554/elife.36426openalex-snapshot
The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history
inferred← citeshttps://doi.org/10.7554/elife.43606openalex-snapshot
Long-term balancing selection drives evolution of immunity genes in Capsella
inferred← citeshttps://doi.org/10.7554/elife.51712openalex-snapshot
Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, Brassicaceae)
inferred← citeshttps://doi.org/10.7554/elife.63753openalex-snapshot
Determining the probability of hemiplasy in the presence of incomplete lineage sorting and introgression
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.