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Rising to the challenge: accelerated pace of discovery transforms marine virology
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Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/9780470281840openalex-snapshot
Microbial Ecology of the Oceans
inferredcites →https://doi.org/10.1002/bies.201200174openalex-snapshot
From deep sequencing to viral tagging: Recent advances in viral metagenomics
inferredcites →https://doi.org/10.1007/bf00397184openalex-snapshot
Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters: Evaluation and field results
inferredcites →https://doi.org/10.1007/s10872-007-0023-8openalex-snapshot
Flow cytometric detection and enumeration of DNA and RNA viruses infecting marine eukaryotic microalgae
inferredcites →https://doi.org/10.1016/j.coviro.2013.07.004openalex-snapshot
The global virome: not as big as we thought?
inferredcites →https://doi.org/10.1016/j.ecolmodel.2010.12.014openalex-snapshot
Modeling the seasonal autochthonous sources of dissolved organic carbon and nitrogen in the upper Chesapeake Bay
inferredcites →https://doi.org/10.1016/j.jmarsys.2012.01.002openalex-snapshot
Comparative simulations of dissolved organic matter cycling in idealized oceanic, coastal, and estuarine surface waters
inferredcites →https://doi.org/10.1016/j.tim.2012.10.005openalex-snapshot
Fake virus particles generated by fluorescence microscopy
inferredcites →https://doi.org/10.1016/j.tim.2012.11.003openalex-snapshot
Phage–bacteria infection networks
inferredcites →https://doi.org/10.1016/j.virol.2012.09.036openalex-snapshot
Ocean viruses: Rigorously evaluating the metagenomic sample-to-sequence pipeline
inferredcites →https://doi.org/10.1016/s0166-0934(99)00167-6openalex-snapshot
Flow cytometric detection of viruses
inferredcites →https://doi.org/10.1038/21119openalex-snapshot
Marine viruses and their biogeochemical and ecological effects
inferredcites →https://doi.org/10.1038/340467a0openalex-snapshot
High abundance of viruses found in aquatic environments
inferredcites →https://doi.org/10.1038/343060a0openalex-snapshot
Viral mortality of marine bacteria and cyanobacteria
inferredcites →https://doi.org/10.1038/35054051openalex-snapshot
Archaeal dominance in the mesopelagic zone of the Pacific Ocean
inferredcites →https://doi.org/10.1038/424741aopenalex-snapshot
Bacterial photosynthesis genes in a virus
inferredcites →https://doi.org/10.1038/ismej.2008.35openalex-snapshot
Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?
inferredcites →https://doi.org/10.1038/ismej.2010.1openalex-snapshot
Viral and microbial community dynamics in four aquatic environments
inferredcites →https://doi.org/10.1038/ismej.2010.188openalex-snapshot
Diversity and distribution of single-stranded DNA phages in the North Atlantic Ocean
inferredcites →https://doi.org/10.1038/ismej.2011.101openalex-snapshot
Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea
inferredcites →https://doi.org/10.1038/ismej.2011.2openalex-snapshot
Comparative metagenomics of microbial traits within oceanic viral communities
inferredcites →https://doi.org/10.1038/ismej.2012.121openalex-snapshot
Are we missing half of the viruses in the ocean?
inferredcites →https://doi.org/10.1038/ismej.2012.135openalex-snapshot
Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages
inferredcites →https://doi.org/10.1038/ismej.2013.110openalex-snapshot
Previously unknown and highly divergent ssDNA viruses populate the oceans
inferredcites →https://doi.org/10.1038/ismej.2013.19openalex-snapshot
Short-term observations of marine bacterial and viral communities: patterns, connections and resilience
inferredcites →https://doi.org/10.1038/ismej.2013.199openalex-snapshot
Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists
inferredcites →https://doi.org/10.1038/ismej.2013.59openalex-snapshot
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
inferredcites →https://doi.org/10.1038/ismej.2013.67openalex-snapshot
Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses
inferredcites →https://doi.org/10.1038/ismej.2014.143openalex-snapshot
Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome
inferredcites →https://doi.org/10.1038/ismej.2014.184openalex-snapshot
Membrane vesicles in natural environments: a major challenge in viral ecology
inferredcites →https://doi.org/10.1038/nature01886openalex-snapshot
High diversity of unknown picorna-like viruses in the sea
inferredcites →https://doi.org/10.1038/nature01929openalex-snapshot
Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
inferredcites →https://doi.org/10.1038/nature04111openalex-snapshot
Photosynthesis genes in marine viruses yield proteins during host infection
inferredcites →https://doi.org/10.1038/nature06130openalex-snapshot
Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution
inferredcites →https://doi.org/10.1038/nature10172openalex-snapshot
Genomic island variability facilitates Prochlorococcus–virus coexistence
inferredcites →https://doi.org/10.1038/nature11921openalex-snapshot
Abundant SAR11 viruses in the ocean
inferredcites →https://doi.org/10.1038/nature12212openalex-snapshot
Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome
inferredcites →https://doi.org/10.1038/nature12387openalex-snapshot
SAR11 viruses and defensive host strains
inferredcites →https://doi.org/10.1038/nature13459openalex-snapshot
Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
inferredcites →https://doi.org/10.1038/nprot.2013.038openalex-snapshot
Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA
inferredcites →https://doi.org/10.1038/nrmicro1527openalex-snapshot
Viruses of the Archaea: a unifying view
inferredcites →https://doi.org/10.1038/nrmicro2778openalex-snapshot
Microbial ecology of expanding oxygen minimum zones
inferredcites →https://doi.org/10.1038/nrmicro3218openalex-snapshot
Explaining microbial genomic diversity in light of evolutionary ecology
inferredcites →https://doi.org/10.1073/pnas.0401526101openalex-snapshot
Transfer of photosynthesis genes to and from Prochlorococcus viruses
inferredcites →https://doi.org/10.1073/pnas.1101595108openalex-snapshot
Statistical structure of host–phage interactions
inferredcites →https://doi.org/10.1073/pnas.1120310109openalex-snapshot
Rapid diversification of coevolving marine Synechococcus and a virus
inferredcites →https://doi.org/10.1073/pnas.1219930110openalex-snapshot
Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans
inferredcites →https://doi.org/10.1073/pnas.1305956110openalex-snapshot
Twelve previously unknown phage genera are ubiquitous in global oceans
inferredcites →https://doi.org/10.1073/pnas.1313713111openalex-snapshot
Gene-centric approach to integrating environmental genomics and biogeochemical models
inferredcites →https://doi.org/10.1073/pnas.1319778111openalex-snapshot
Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses
inferredcites →https://doi.org/10.1073/pnas.202488399openalex-snapshot
Genomic analysis of uncultured marine viral communities
inferredcites →https://doi.org/10.1080/10635150118513openalex-snapshot
Environmental Diversity of Bacteria and Archaea
inferredcites →https://doi.org/10.1093/bioinformatics/btr519openalex-snapshot
Metavir: a web server dedicated to virome analysis
inferredcites →https://doi.org/10.1098/rsob.130160openalex-snapshot
Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences
inferredcites →https://doi.org/10.1098/rspb.2003.2628openalex-snapshot
Diversity and population structure of a near–shore marine–sediment viral community
inferredcites →https://doi.org/10.1099/vir.0.012955-0openalex-snapshot
Diverse circovirus-like genome architectures revealed by environmental metagenomics
inferredcites →https://doi.org/10.1111/1462-2920.12100openalex-snapshot
Single‐cell and population level viral infection dynamics revealed by phage FISH , a method to visualize intracellular and free viruses
inferredcites →https://doi.org/10.1111/1462-2920.12391openalex-snapshot
Contrasting genomic patterns and infection strategies of two co‐existing B acteroidetes podovirus genera
inferredcites →https://doi.org/10.1111/j.1462-2920.2005.00833.xopenalex-snapshot
Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates
inferredcites →https://doi.org/10.1111/j.1462-2920.2005.00969.xopenalex-snapshot
Transcription of a ‘photosynthetic’ T4‐type phage during infection of a marine cyanobacterium
inferredcites →https://doi.org/10.1111/j.1462-2920.2009.02081.xopenalex-snapshot
The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial ‘mobilome’
inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02280.xopenalex-snapshot
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4‐like myoviruses from diverse hosts and environments
inferredcites →https://doi.org/10.1111/j.1462-2920.2012.02744.xopenalex-snapshot
Seasonality and monthly dynamics of marine myovirus communities
inferredcites →https://doi.org/10.1111/j.1462-2920.2012.02791.xopenalex-snapshot
Towards quantitative metagenomics of wild viruses and other ultra‐low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
inferredcites →https://doi.org/10.1111/j.1462-2920.2012.02836.xopenalex-snapshot
Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics
inferredcites →https://doi.org/10.1111/j.1574-6976.2008.00132.xopenalex-snapshot
RNA viruses in the sea
inferredcites →https://doi.org/10.1111/j.1758-2229.2010.00208.xopenalex-snapshot
A simple and efficient method for concentration of ocean viruses by chemical flocculation
inferredcites →https://doi.org/10.1126/science.1120250openalex-snapshot
Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
inferredcites →https://doi.org/10.1126/science.1127404openalex-snapshot
Metagenomic Analysis of Coastal RNA Virus Communities
inferredcites →https://doi.org/10.1126/science.1153213openalex-snapshot
The Microbial Engines That Drive Earth's Biogeochemical Cycles
inferredcites →https://doi.org/10.1126/science.1200758openalex-snapshot
Probing Individual Environmental Bacteria for Viruses by Using Microfluidic Digital PCR
inferredcites →https://doi.org/10.1126/science.1243457openalex-snapshot
Bacterial Vesicles in Marine Ecosystems
inferredcites →https://doi.org/10.1126/science.1252229openalex-snapshot
Sulfur Oxidation Genes in Diverse Deep-Sea Viruses
inferredcites →https://doi.org/10.1126/science.276.5313.734openalex-snapshot
A Molecular View of Microbial Diversity and the Biosphere
inferredcites →https://doi.org/10.1128/aem.00289-11openalex-snapshot
Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses
inferredcites →https://doi.org/10.1128/aem.02181-07openalex-snapshot
Metagenomics: Read Length Matters
inferredcites →https://doi.org/10.1128/aem.06580-11openalex-snapshot
Cultivated Single-Stranded DNA Phages That Infect Marine Bacteroidetes Prove Difficult To Detect with DNA-Binding Stains
inferredcites →https://doi.org/10.1128/aem.59.10.3393-3399.1993openalex-snapshot
Resistance to Co-Occurring Phages Enables Marine Synechococcus Communities To Coexist with Cyanophages Abundant in Seawater
inferredcites →https://doi.org/10.1128/aem.64.6.2051-2060.1998openalex-snapshot
Occurrence of a Sequence in Marine Cyanophages Similar to That of T4 g20 and Its Application to PCR-Based Detection and Quantification Techniques
inferredcites →https://doi.org/10.1128/aem.65.1.231-240.1999openalex-snapshot
Population Dynamics of Chesapeake Bay Virioplankton: Total-Community Analysis by Pulsed-Field Gel Electrophoresis
inferredcites →https://doi.org/10.1128/aem.65.1.45-52.1999openalex-snapshot
Enumeration of Marine Viruses in Culture and Natural Samples by Flow Cytometry
inferredcites →https://doi.org/10.1128/aem.66.6.2283-2289.2000openalex-snapshot
A Comparison of Methods for Counting Viruses in Aquatic Systems
inferredcites →https://doi.org/10.1128/jb.01896-06openalex-snapshot
Analysis of the First Genome of a Hyperthermophilic Marine Virus-Like Particle, PAV1, Isolated fromPyrococcus abyssi
inferredcites →https://doi.org/10.1128/jb.183.1.358-366.2001openalex-snapshot
Phylogeny of the Major Head and Tail Genes of the Wide-Ranging T4-Type Bacteriophages
inferredcites →https://doi.org/10.1128/mbio.00373-12openalex-snapshot
Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
inferredcites →https://doi.org/10.1128/mmbr.64.1.69-114.2000openalex-snapshot
Virioplankton: Viruses in Aquatic Ecosystems
inferredcites →https://doi.org/10.1146/annurev-marine-120709-142805openalex-snapshot
Marine Viruses: Truth or Dare
inferredcites →https://doi.org/10.1146/annurev.mi.39.100185.001541openalex-snapshot
MEASUREMENT OF IN SITU ACTIVITIES OF NONPHOTOSYNTHETIC MICROORGANISMS IN AQUATIC AND TERRESTRIAL HABITATS
inferredcites →https://doi.org/10.1146/annurev.micro.57.030502.090759openalex-snapshot
The Uncultured Microbial Majority
inferredcites →https://doi.org/10.1186/1471-2164-10-229openalex-snapshot
A supervised learning approach for taxonomic classification of core-photosystem-II genes and transcripts in the marine environment
inferredcites →https://doi.org/10.1186/1471-2164-14-320openalex-snapshot
Sequencing platform and library preparation choices impact viral metagenomes
inferredcites →https://doi.org/10.1186/1743-422x-8-287openalex-snapshot
Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct shotgun cloning
inferredcites →https://doi.org/10.1186/2049-2618-2-9openalex-snapshot
Comparative metagenomic analyses reveal viral-induced shifts of host metabolism towards nucleotide biosynthesis
inferredcites →https://doi.org/10.1186/gb-2013-14-11-r123openalex-snapshot
Metabolic reprogramming by viruses in the sunlit and dark ocean
inferredcites →https://doi.org/10.1371/journal.pbio.0030144openalex-snapshot
Three Prochlorococcus Cyanophage Genomes: Signature Features and Ecological Interpretations
inferredcites →https://doi.org/10.1371/journal.pbio.0040234openalex-snapshot
Prevalence and Evolution of Core Photosystem II Genes in Marine Cyanobacterial Viruses and Their Hosts
inferredcites →https://doi.org/10.1371/journal.pbio.0040368openalex-snapshot
The Marine Viromes of Four Oceanic Regions
inferredcites →https://doi.org/10.1371/journal.pbio.0050016openalex-snapshot
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
inferredcites →https://doi.org/10.1371/journal.pbio.0050077openalex-snapshot
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
inferredcites →https://doi.org/10.1371/journal.pbio.1001177openalex-snapshot
A Holistic Approach to Marine Eco-Systems Biology
inferredcites →https://doi.org/10.1371/journal.pcbi.1002657openalex-snapshot
Artificial Neural Networks Trained to Detect Viral and Phage Structural Proteins
inferredcites →https://doi.org/10.1371/journal.pgen.1003987openalex-snapshot
Expanding the Marine Virosphere Using Metagenomics
inferredcites →https://doi.org/10.1371/journal.pone.0003550openalex-snapshot
Modeling the Fitness Consequences of a Cyanophage-Encoded Photosynthesis Gene
inferredcites →https://doi.org/10.1371/journal.pone.0040418openalex-snapshot
Evolution and Diversity of the Microviridae Viral Family through a Collection of 81 New Complete Genomes Assembled from Virome Reads
inferredcites →https://doi.org/10.1371/journal.pone.0057355openalex-snapshot
The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology
inferredcites →https://doi.org/10.2307/1313569openalex-snapshot
Viruses and Nutrient Cycles in the Sea
inferredcites →https://doi.org/10.2307/1940151openalex-snapshot
Special Feature: The Relative Contributions to Top‐Down and Bottom‐Up Forces in Population and Community Ecology
inferredcites →https://doi.org/10.3354/ame013225openalex-snapshot
Comparison of epifluorescence and transmission electron microscopy for counting viruses in natural marine waters
inferredcites →https://doi.org/10.3354/ame014113openalex-snapshot
Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria
inferredcites →https://doi.org/10.3354/ame020001openalex-snapshot
Breakdown and microbial uptake of marine viruses and other lysis products
inferredcites →https://doi.org/10.3354/ame041103openalex-snapshot
Concentration, production and turnover of viruses and dissolved DNA pools at Stn ALOHA, North Pacific Subtropical Gyre
inferredcites →https://doi.org/10.3354/meps092099openalex-snapshot
Marine cyanophages infecting oceanic and coastal strains of Synechococcus: abundance, morphology, cross-infectivity and growth characteristics
inferredcites →https://doi.org/10.3410/b4-17openalex-snapshot
Ocean viruses and their effects on microbial communities and biogeochemical cycles
inferredcites →https://doi.org/10.4161/bact.28265openalex-snapshot
Tales from a thousand and one phages
inferredcites →https://doi.org/10.4319/lo.1995.40.6.1050openalex-snapshot
Direct counts of viruses in natural waters and laboratory cultures by epifluorescence microscopy
inferredcites →https://doi.org/10.4319/lo.1997.42.7.1492openalex-snapshot
Release and bioavailability of C, N, P Se, and Fe following viral lysis of a marine chrysophyte
inferredcites →https://doi.org/10.4319/lo.2000.45.6.1320openalex-snapshot
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
inferredcites →https://doi.org/10.4319/lo.2000.45.8.1697openalex-snapshot
Genome size distributions indicate variability and similarities among marine viral assemblages from diverse environments
inferredcites →https://doi.org/10.4319/mave.2010.978-0-9845591-0-7openalex-snapshot
Manual of Aquatic Viral Ecology
inferredcites →https://doi.org/10.5670/oceanog.2007.58openalex-snapshot
Exploring the Vast Diversity of Marine Viruses
inferredcites →https://doi.org/10.5860/choice.38-5020openalex-snapshot
Microbial ecology of the oceans
inferredcites →https://doi.org/10.7554/elife.03125openalex-snapshot
Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Freshwater Viromes: From Sampling to Evaluation
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Marine Microbial Community Adaptation and Resiliency to Anthropogenic Stresses Through Horizontal Gene Transfer
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inferred← citeshttps://doi.org/10.1016/bs.aivir.2018.02.004openalex-snapshot
Water-Mediated Transmission of Plant, Animal, and Human Viruses
inferred← citeshttps://doi.org/10.1016/j.agee.2022.108076openalex-snapshot
Consecutive monoculture regimes differently affected the diversity of the rhizosphere soil viral community and accumulated soil-borne plant viruses
inferred← citeshttps://doi.org/10.1016/j.apsoil.2024.105554openalex-snapshot
The impact of soil viruses on organic carbon mineralization and microbial biomass turnover
inferred← citeshttps://doi.org/10.1016/j.cej.2024.153964openalex-snapshot
Uncovering effects of anaerobic digestion process on viral communities in activated sludges using viromic approaches
inferred← citeshttps://doi.org/10.1016/j.cell.2017.10.045openalex-snapshot
Contemporary Phage Biology: From Classic Models to New Insights
inferred← citeshttps://doi.org/10.1016/j.copbio.2016.04.011openalex-snapshot
High definition for systems biology of microbial communities: metagenomics gets genome-centric and strain-resolved
inferred← citeshttps://doi.org/10.1016/j.csag.2024.100022openalex-snapshot
Unveiling the top-down control of soil viruses over microbial communities and soil organic carbon cycling: A review
inferred← citeshttps://doi.org/10.1016/j.envint.2024.109125openalex-snapshot
Seasonal succession, host associations, and biochemical roles of aquatic viruses in a eutrophic lake plagued by cyanobacterial blooms
inferred← citeshttps://doi.org/10.1016/j.envpol.2025.126636openalex-snapshot
Diversity and functional roles of viral communities in gene transfer and antibiotic resistance in aquaculture waters and microplastic biofilms
inferred← citeshttps://doi.org/10.1016/j.envres.2026.125138openalex-snapshot
Microplastics as emerging viral vectors: Nexus, mechanisms, ecological implications and health risks
inferred← citeshttps://doi.org/10.1016/j.gpb.2015.06.004openalex-snapshot
First Insights into the Viral Communities of the Deep-Sea Anoxic Brines of the Red Sea
inferred← citeshttps://doi.org/10.1016/j.isci.2021.102900openalex-snapshot
Gut dsDNA virome shows diversity and richness alterations associated with childhood obesity and metabolic syndrome
inferred← citeshttps://doi.org/10.1016/j.isci.2021.103439openalex-snapshot
Saline lakes on the Qinghai-Tibet Plateau harbor unique viral assemblages mediating microbial environmental adaption
inferred← citeshttps://doi.org/10.1016/j.isci.2022.104680openalex-snapshot
Virioplankton assemblages from challenger deep, the deepest place in the oceans
inferred← citeshttps://doi.org/10.1016/j.jare.2023.04.009openalex-snapshot
Environmental viromes reveal the global distribution signatures of deep-sea DNA viruses
inferred← citeshttps://doi.org/10.1016/j.jes.2024.08.026openalex-snapshot
Virus communities rather than bacterial communities contribute more on nutrient pool in polluted aquatic environment
inferred← citeshttps://doi.org/10.1016/j.jes.2026.105814openalex-snapshot
Domoic acid deposition reshapes benthic viral community structure, virus–host interactions, and functional profiles in coastal sediments
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2024.135147openalex-snapshot
Effects of vegetation cover and aquaculture pollution on viral assemblages in mangroves sediments
inferred← citeshttps://doi.org/10.1016/j.margen.2017.02.006openalex-snapshot
Modelling plankton ecosystems in the meta-omics era. Are we ready?
inferred← citeshttps://doi.org/10.1016/j.margen.2026.101281openalex-snapshot
Characterization and genomic analysis of the newly isolated Ruegeria phage DSS3_VP2
inferred← citeshttps://doi.org/10.1016/j.mib.2016.04.002openalex-snapshot
Viral metabolic reprogramming in marine ecosystems
inferred← citeshttps://doi.org/10.1016/j.resmic.2018.05.002openalex-snapshot
Bacteriophage research – What we have learnt and what still needs to be addressed
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.139275openalex-snapshot
Resurrection of inactive microbes and resistome present in the natural frozen world: Reality or myth?
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.143499openalex-snapshot
The communities and functional profiles of virioplankton along a salinity gradient in a subtropical estuary
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2021.152217openalex-snapshot
Unravelling the ecological complexity of soil viromes: Challenges and opportunities
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.162289openalex-snapshot
Ecological drivers and potential functions of viral communities in flooded arsenic-contaminated paddy soils
inferred← citeshttps://doi.org/10.1016/j.soilbio.2024.109419openalex-snapshot
Exploring viral particle, soil, and extraction buffer physicochemical characteristics and their impacts on extractable viral communities
inferred← citeshttps://doi.org/10.1016/j.tim.2017.12.004openalex-snapshot
The ‘Neglected’ Soil Virome – Potential Role and Impact
inferred← citeshttps://doi.org/10.1016/j.virol.2017.01.005openalex-snapshot
VirusSeeker, a computational pipeline for virus discovery and virome composition analysis
inferred← citeshttps://doi.org/10.1016/j.virusres.2017.10.020openalex-snapshot
Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer
inferred← citeshttps://doi.org/10.1016/j.virusres.2017.11.011openalex-snapshot
Increase in taxonomic assignment efficiency of viral reads in metagenomic studies
inferred← citeshttps://doi.org/10.1016/j.virusres.2020.198155openalex-snapshot
Genomic analysis of Synechococcus phage S-B43 and its adaption to the coastal environment
inferred← citeshttps://doi.org/10.1016/j.watbs.2022.100062openalex-snapshot
Recent insights into aquatic viruses: Emerging and reemerging pathogens, molecular features, biological effects, and novel investigative approaches
inferred← citeshttps://doi.org/10.1016/j.watres.2019.01.003openalex-snapshot
Coupled virus - bacteria interactions and ecosystem function in an engineered microbial system
inferred← citeshttps://doi.org/10.1021/acs.est.1c03847openalex-snapshot
Viral Community and Virus-Associated Antibiotic Resistance Genes in Soils Amended with Organic Fertilizers
inferred← citeshttps://doi.org/10.1021/acs.est.2c07800openalex-snapshot
Potential Auxiliary Metabolic Capabilities and Activities Reveal Biochemical Impacts of Viruses in Municipal Wastewater Treatment Plants
inferred← citeshttps://doi.org/10.1029/2023gb007701openalex-snapshot
How Well do Earth System Models Capture Apparent Relationships Between Phytoplankton Biomass and Environmental Variables?
inferred← citeshttps://doi.org/10.1038/ismej.2015.125openalex-snapshot
Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics
inferred← citeshttps://doi.org/10.1038/ismej.2016.134openalex-snapshot
Membrane vesicles in sea water: heterogeneous DNA content and implications for viral abundance estimates
inferred← citeshttps://doi.org/10.1038/ismej.2016.160openalex-snapshot
Temperature is a key factor in Micromonas–virus interactions
inferred← citeshttps://doi.org/10.1038/ismej.2017.61openalex-snapshot
Genomic exploration of individual giant ocean viruses
inferred← citeshttps://doi.org/10.1038/nature19366openalex-snapshot
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
inferred← citeshttps://doi.org/10.1038/nature23295openalex-snapshot
Lysis, lysogeny and virus–microbe ratios
inferred← citeshttps://doi.org/10.1038/nature25474openalex-snapshot
A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria
inferred← citeshttps://doi.org/10.1038/nbt.4306openalex-snapshot
Minimum Information about an Uncultivated Virus Genome (MIUViG)
inferred← citeshttps://doi.org/10.1038/nmicrobiol.2015.15openalex-snapshot
An assessment of US microbiome research
inferred← citeshttps://doi.org/10.1038/nmicrobiol.2015.24openalex-snapshot
Re-examination of the relationship between marine virus and microbial cell abundances
inferred← citeshttps://doi.org/10.1038/s41396-018-0052-xopenalex-snapshot
Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan
inferred← citeshttps://doi.org/10.1038/s41396-018-0071-7openalex-snapshot
A virus or more in (nearly) every cell: ubiquitous networks of virus–host interactions in extreme environments
inferred← citeshttps://doi.org/10.1038/s41396-020-00752-6openalex-snapshot
A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances
inferred← citeshttps://doi.org/10.1038/s41396-020-00872-zopenalex-snapshot
Efficient dilution-to-extinction isolation of novel virus–host model systems for fastidious heterotrophic bacteria
inferred← citeshttps://doi.org/10.1038/s41396-021-00897-yopenalex-snapshot
Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities
inferred← citeshttps://doi.org/10.1038/s41396-021-00932-yopenalex-snapshot
Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity
inferred← citeshttps://doi.org/10.1038/s41396-021-01117-3openalex-snapshot
Incomplete tricarboxylic acid cycle and proton gradient in Pandoravirus massiliensis : is it still a virus?
inferred← citeshttps://doi.org/10.1038/s41396-021-01143-1openalex-snapshot
Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state
inferred← citeshttps://doi.org/10.1038/s41396-022-01188-wopenalex-snapshot
Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes
inferred← citeshttps://doi.org/10.1038/s41396-023-01468-zopenalex-snapshot
Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios
inferred← citeshttps://doi.org/10.1038/s41467-019-09106-zopenalex-snapshot
Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes
inferred← citeshttps://doi.org/10.1038/s41467-022-30049-5openalex-snapshot
Patterns and ecological drivers of viral communities in acid mine drainage sediments across Southern China
inferred← citeshttps://doi.org/10.1038/s41467-023-44028-xopenalex-snapshot
Viruses under the Antarctic Ice Shelf are active and potentially involved in global nutrient cycles
inferred← citeshttps://doi.org/10.1038/s41467-024-51101-6openalex-snapshot
Global diversity and ecological functions of viruses inhabiting oil reservoirs
inferred← citeshttps://doi.org/10.1038/s41467-024-53317-yopenalex-snapshot
Seasonal dynamics and diversity of Antarctic marine viruses reveal a novel viral seascape
inferred← citeshttps://doi.org/10.1038/s41467-025-59154-xopenalex-snapshot
Endemism shapes viral ecology and evolution in globally distributed hydrothermal vent ecosystems
inferred← citeshttps://doi.org/10.1038/s41467-026-71398-9openalex-snapshot
Complex temporal dynamics of phage-bacteria populations in an animal-associated marine system
inferred← citeshttps://doi.org/10.1038/s41559-020-01288-wopenalex-snapshot
Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions
inferred← citeshttps://doi.org/10.1038/s41559-023-02207-5openalex-snapshot
Viral but not bacterial community successional patterns reflect extreme turnover shortly after rewetting dry soils
inferred← citeshttps://doi.org/10.1038/s41561-024-01508-zopenalex-snapshot
Glacier-preserved Tibetan Plateau viral community probably linked to warm–cold climate variations
inferred← citeshttps://doi.org/10.1038/s41564-017-0045-yopenalex-snapshot
Quantification of diverse virus populations in the environment using the polony method
inferred← citeshttps://doi.org/10.1038/s41564-018-0166-yopenalex-snapshot
Phage puppet masters of the marine microbial realm
inferred← citeshttps://doi.org/10.1038/s41564-018-0190-yopenalex-snapshot
Host-linked soil viral ecology along a permafrost thaw gradient
inferred← citeshttps://doi.org/10.1038/s41564-019-0510-xopenalex-snapshot
Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
inferred← citeshttps://doi.org/10.1038/s41564-020-0755-4openalex-snapshot
Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome
inferred← citeshttps://doi.org/10.1038/s41564-024-01767-xopenalex-snapshot
Integrating viruses into soil food web biogeochemistry
inferred← citeshttps://doi.org/10.1038/s41579-019-0270-xopenalex-snapshot
Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems
inferred← citeshttps://doi.org/10.1038/s41579-019-0311-5openalex-snapshot
Phage diversity, genomics and phylogeny
inferred← citeshttps://doi.org/10.1038/s41579-020-00444-0openalex-snapshot
Single-virus genomics and beyond
inferred← citeshttps://doi.org/10.1038/s41579-020-0364-5openalex-snapshot
Tara Oceans: towards global ocean ecosystems biology
inferred← citeshttps://doi.org/10.1038/s41579-022-00811-zopenalex-snapshot
Soil viral diversity, ecology and climate change
inferred← citeshttps://doi.org/10.1038/s41597-025-06062-wopenalex-snapshot
Dynamics of the DNA Viral Community in Korean Coastal Waters
inferred← citeshttps://doi.org/10.1038/s41598-017-09317-8openalex-snapshot
A novel inducible prophage from the mycosphere inhabitant Paraburkholderia terrae BS437
inferred← citeshttps://doi.org/10.1038/s41598-019-39847-2openalex-snapshot
Host Taxon Predictor - A Tool for Predicting Taxon of the Host of a Newly Discovered Virus
inferred← citeshttps://doi.org/10.1038/s41598-021-97867-3openalex-snapshot
High-throughput identification of viral termini and packaging mechanisms in virome datasets using PhageTermVirome
inferred← citeshttps://doi.org/10.1038/s42003-024-06798-yopenalex-snapshot
Metagenomic analysis reveals high diversity of gut viromes in yaks (Bos grunniens) from the Qinghai-Tibet Plateau
inferred← citeshttps://doi.org/10.1038/s43705-021-00083-3openalex-snapshot
iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
inferred← citeshttps://doi.org/10.1038/s43705-022-00093-9openalex-snapshot
Viral tag and grow: a scalable approach to capture and characterize infectious virus–host pairs
inferred← citeshttps://doi.org/10.1038/s43705-022-00109-4openalex-snapshot
Experimental evidence for the impact of soil viruses on carbon cycling during surface plant litter decomposition
inferred← citeshttps://doi.org/10.1038/s43705-023-00295-9openalex-snapshot
MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
inferred← citeshttps://doi.org/10.1038/srep28428openalex-snapshot
Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses
inferred← citeshttps://doi.org/10.1038/srep44176openalex-snapshot
Visualizing Adsorption of Cyanophage P-SSP7 onto Marine Prochlorococcus
inferred← citeshttps://doi.org/10.1042/cs20171330openalex-snapshot
Does the microbiome and virome contribute to myalgic encephalomyelitis/chronic fatigue syndrome?
inferred← citeshttps://doi.org/10.1073/pnas.1525139113openalex-snapshot
Illuminating structural proteins in viral “dark matter” with metaproteomics
inferred← citeshttps://doi.org/10.1073/pnas.1908291116openalex-snapshot
Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
inferred← citeshttps://doi.org/10.1080/10408398.2023.2299323openalex-snapshot
The insights into the phage communities of fermented foods in the age of viral metagenomics
inferred← citeshttps://doi.org/10.1089/cmb.2022.0397openalex-snapshot
FastViromeExplorer-Novel: Recovering Draft Genomes of Novel Viruses and Phages in Metagenomic Data
inferred← citeshttps://doi.org/10.1093/9780197831632.003.0002openalex-snapshot
Elements, Biochemicals, and Cellular Structures
inferred← citeshttps://doi.org/10.1093/9780197831632.003.0003openalex-snapshot
The Physical-Chemical Environment
inferred← citeshttps://doi.org/10.1093/9780197831632.003.0006openalex-snapshot
Genomes and Meta-Omics
inferred← citeshttps://doi.org/10.1093/9780197831632.003.0007openalex-snapshot
Predation and Protists
inferred← citeshttps://doi.org/10.1093/9780197831632.003.0011openalex-snapshot
Processes in Anoxic Environments
inferred← citeshttps://doi.org/10.1093/9780197831632.003.0014openalex-snapshot
Symbioses and Microbes
inferred← citeshttps://doi.org/10.1093/bioadv/vbag149openalex-snapshot
vClassifier: a toolkit for high-resolution phylogenetic classification of prokaryotic viruses
inferred← citeshttps://doi.org/10.1093/femsec/fiab167openalex-snapshot
Year-round dynamics of amplicon sequence variant communities differ among eukaryotes,Imiterviralesand prokaryotes in a coastal ecosystem
inferred← citeshttps://doi.org/10.1093/femsec/fiae052openalex-snapshot
The role of rhizosphere phages in soil health
inferred← citeshttps://doi.org/10.1093/femsle/fnw158openalex-snapshot
Marine phage genomics: the tip of the iceberg
inferred← citeshttps://doi.org/10.1093/femsle/fnz094openalex-snapshot
Estimate of the diversity of viral and bacterial assemblage in the coastal water of Lake Baikal
inferred← citeshttps://doi.org/10.1093/ismeco/ycaf233openalex-snapshot
Comparative transcriptomes reveal differential effects on host metabolism reprogramming in two different pelagiphage-SAR11 infection systems
inferred← citeshttps://doi.org/10.1093/ismeco/ycag189openalex-snapshot
Spatial and depth structuring predominate over temporal variation in Mediterranean climate grassland soil viral communities
inferred← citeshttps://doi.org/10.1093/nar/gkaa621openalex-snapshot
DRAM for distilling microbial metabolism to automate the curation of microbiome function
inferred← citeshttps://doi.org/10.1093/nar/gkaa946openalex-snapshot
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
inferred← citeshttps://doi.org/10.1093/nar/gkab133openalex-snapshot
Streamlining CRISPR spacer-based bacterial host predictions to decipher the viral dark matter
inferred← citeshttps://doi.org/10.1093/nar/gkaf1225openalex-snapshot
VIRE: a metagenome-derived, planetary-scale virome resource with environmental context
inferred← citeshttps://doi.org/10.1093/nar/gkw1030openalex-snapshot
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
inferred← citeshttps://doi.org/10.1093/nar/gky1127openalex-snapshot
IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.001.0001openalex-snapshot
Processes in Microbial Ecology
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0002openalex-snapshot
Elements, biochemicals, and structures of microbes
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0003openalex-snapshot
The physical-chemical environment of microbes
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0004openalex-snapshot
Community structure of microbes in natural environments
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0005openalex-snapshot
Genomes and meta-omics for microbes
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0006openalex-snapshot
Microbial primary production and phototrophy
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0007openalex-snapshot
Degradation of organic matter
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0008openalex-snapshot
Microbial growth, biomass production, and controls
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0010openalex-snapshot
The ecology of viruses
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0012openalex-snapshot
The nitrogen cycle
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0013openalex-snapshot
Introduction to geomicrobiology
inferred← citeshttps://doi.org/10.1093/ve/vez006openalex-snapshot
Viral invasion fitness across a continuum from lysis to latency†
inferred← citeshttps://doi.org/10.1094/pbiomes-11-21-0073-rvwopenalex-snapshot
Predators of Soil Bacteria in Plant and Human Health
inferred← citeshttps://doi.org/10.1096/fj.201601168ropenalex-snapshot
Viruses comprise an extensive pool of mobile genetic elements in eukaryote cell cultures and human clinical samples
inferred← citeshttps://doi.org/10.1098/rsos.160654openalex-snapshot
Inferring phage–bacteria infection networks from time-series data
inferred← citeshttps://doi.org/10.1098/rstb.2019.0086openalex-snapshot
Targeted metagenomic recovery of four divergent viruses reveals shared and distinctive characteristics of giant viruses of marine eukaryotes
inferred← citeshttps://doi.org/10.1101/2020.11.03.367664openalex-snapshot
Comparing the diversity and relative abundance of free and particle-associated aquatic viruses
inferred← citeshttps://doi.org/10.1101/2021.01.25.428156openalex-snapshot
Ecology of active viruses and their bacterial hosts in frozen Arctic peat soil revealed with H 2 18 O stable isotope probing metagenomics
inferred← citeshttps://doi.org/10.1101/2021.02.02.429489openalex-snapshot
Year-round dynamics of amplicon sequence variant communities differ among eukaryotes, Mimiviridae , and prokaryotes in a coastal ecosystem
inferred← citeshttps://doi.org/10.1101/2021.05.05.442762openalex-snapshot
Genetic determinism of phage-bacteria coevolution in natural populations
inferred← citeshttps://doi.org/10.1101/2021.06.14.448389openalex-snapshot
Accurate viral genome reconstruction and host assignment with proximity-ligation sequencing
inferred← citeshttps://doi.org/10.1101/2022.01.27.478124openalex-snapshot
Genomic and phylogenetic analysis of the first myovirus isolated from Oceanospirillaceae , representing a novel viral cluster prevalent in polar oceans
inferred← citeshttps://doi.org/10.1101/2022.09.06.506642openalex-snapshot
Divergence in bacterial ecology is reflected by difference in population genetic structure, phage-predator load and host range
inferred← citeshttps://doi.org/10.1101/2023.09.19.558540openalex-snapshot
Diversity and ecological functions of viruses inhabiting the oil reservoirs
inferred← citeshttps://doi.org/10.1101/2023.09.25.559239openalex-snapshot
The role of phages in proglacial stream biofilm communities characterized by microdiversity
inferred← citeshttps://doi.org/10.1101/2024.05.28.596318openalex-snapshot
vClassifier: a toolkit for species-level classification of prokaryotic viruses
inferred← citeshttps://doi.org/10.1101/2024.10.28.619755openalex-snapshot
Locally heterogeneous soil viral and prokaryotic responses to prescribed burn correspond with patchy burn severity in a mixed conifer forest
inferred← citeshttps://doi.org/10.1101/2025.02.12.637985openalex-snapshot
Synthetic community Hi-C benchmarking provides a baseline for virus-host inferences
inferred← citeshttps://doi.org/10.1101/2025.10.10.681744openalex-snapshot
Ecological constraints foster both extreme viral-host lineage stability and mobile element diversity in a marine community
inferred← citeshttps://doi.org/10.1101/2025.10.20.683370openalex-snapshot
Sub-daily Bermuda Atlantic Time Series virus sampling reveals taxonomy, host, and functional differences at the population, but not community level
inferred← citeshttps://doi.org/10.1101/296897openalex-snapshot
Viral Invasion Fitness Across a Continuum from Lysis to Latency
inferred← citeshttps://doi.org/10.1101/655167openalex-snapshot
Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake
inferred← citeshttps://doi.org/10.1109/access.2019.2957833openalex-snapshot
VFM: Identification of Bacteriophages From Metagenomic Bins and Contigs Based on Features Related to Gene and Genome Composition
inferred← citeshttps://doi.org/10.1111/1462-2920.13009openalex-snapshot
Variably lytic infection dynamics of large B acteroidetes podovirus phi38:1 against two C ellulophaga baltica host strains
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