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Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Mixing alters the lytic activity of viruses in the dark ocean
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Autochthonous origin of semi-labile dissolved organic carbon in a large monomictic lake (Lake Biwa): carbon stable isotopic evidence
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How do freshwater organisms cross the “dry ocean”? A review on passive dispersal and colonization processes with a special focus on temporary ponds
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Ecology of prokaryotic viruses
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Role of phages in the pathogenesis of Burkholderia, or ‘Where are the toxin genes in Burkholderia phages?’
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Viral metabolic reprogramming in marine ecosystems
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Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer
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Infrequent marine–freshwater transitions in the microbial world
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Viruses of archaea: Structural, functional, environmental and evolutionary genomics
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High abundance of viruses found in aquatic environments
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Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?
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Viral and microbial community dynamics in four aquatic environments
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Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria ‘that rule the waves’ (LD12)
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Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome
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Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics
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Complete ecological isolation and cryptic diversity in Polynucleobacter bacteria not resolved by 16S rRNA gene sequences
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Polar freshwater cyanophage S-EIV1 represents a new widespread evolutionary lineage of phages
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Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria
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Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton
inferredcites →https://doi.org/10.1038/ismej.2015.55openalex-snapshot
The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign
inferredcites →https://doi.org/10.1038/ismej.2016.110openalex-snapshot
Metagenomic recovery of phage genomes of uncultured freshwater actinobacteria
inferredcites →https://doi.org/10.1038/ismej.2017.156openalex-snapshot
Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria
inferredcites →https://doi.org/10.1038/ismej.2017.157openalex-snapshot
Temporal dynamics of uncultured viruses: a new dimension in viral diversity
inferredcites →https://doi.org/10.1038/ismej.2017.16openalex-snapshot
Lysogeny in nature: mechanisms, impact and ecology of temperate phages
inferredcites →https://doi.org/10.1038/ismej.2017.89openalex-snapshot
Ubiquity and quantitative significance of bacterioplankton lineages inhabiting the oxygenated hypolimnion of deep freshwater lakes
inferredcites →https://doi.org/10.1038/nature12760openalex-snapshot
Global carbon dioxide emissions from inland waters
inferredcites →https://doi.org/10.1038/nature14486openalex-snapshot
Unusual biology across a group comprising more than 15% of domain Bacteria
inferredcites →https://doi.org/10.1038/nbt.4229openalex-snapshot
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
inferredcites →https://doi.org/10.1038/nclimate1581openalex-snapshot
Harmful filamentous cyanobacteria favoured by reduced water turnover with lake warming
inferredcites →https://doi.org/10.1038/ncomms15892openalex-snapshot
Single-virus genomics reveals hidden cosmopolitan and abundant viruses
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PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
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Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations
inferredcites →https://doi.org/10.1038/s41396-018-0052-xopenalex-snapshot
Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan
inferredcites →https://doi.org/10.1038/s41396-018-0092-2openalex-snapshot
Cultivation and genomics of the first freshwater SAR11 (LD12) isolate
inferredcites →https://doi.org/10.1038/s41396-018-0289-4openalex-snapshot
Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes
inferredcites →https://doi.org/10.1038/s41396-018-0304-9openalex-snapshot
Uneven distribution of cobamide biosynthesis and dependence in bacteria predicted by comparative genomics
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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
inferredcites →https://doi.org/10.1038/s41467-018-08103-yopenalex-snapshot
Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community
inferredcites →https://doi.org/10.1038/s41467-019-08672-6openalex-snapshot
Numerous cultivated and uncultivated viruses encode ribosomal proteins
inferredcites →https://doi.org/10.1038/s41561-019-0322-xopenalex-snapshot
Worldwide alteration of lake mixing regimes in response to climate change
inferredcites →https://doi.org/10.1038/s41598-018-26363-yopenalex-snapshot
Genomic and ecological study of two distinctive freshwater bacteriophages infecting a Comamonadaceae bacterium
inferredcites →https://doi.org/10.1038/srep42252openalex-snapshot
The first complete genome sequences of the acI lineage, the most abundant freshwater Actinobacteria, obtained by whole-genome-amplification of dilution-to-extinction cultures
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btx157openalex-snapshot
ViPTree: the viral proteomic tree server
inferredcites →https://doi.org/10.1093/femsec/fiy104openalex-snapshot
NanoSIMS imaging of extracellular electron transport processes during microbial iron(III) reduction
inferredcites →https://doi.org/10.1093/femsre/fuv048openalex-snapshot
Computational approaches to predict bacteriophage–host relationships
inferredcites →https://doi.org/10.1093/femsre/fuy017openalex-snapshot
Archaeal DNA replication and repair: new genetic, biophysical and molecular tools for discovering and characterizing enzymes, pathways and mechanisms
inferredcites →https://doi.org/10.1101/gr.213959.116openalex-snapshot
metaSPAdes: a new versatile metagenomic assembler
inferredcites →https://doi.org/10.1111/1462-2920.13936openalex-snapshot
Genome characteristics and environmental distribution of the first phage that infects the LD28 clade, a freshwater methylotrophic bacterial group
inferredcites →https://doi.org/10.1111/1462-2920.14462openalex-snapshot
Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes
inferredcites →https://doi.org/10.1111/1574-6976.12072openalex-snapshot
Bacteria–phage coevolution as a driver of ecological and evolutionary processes in microbial communities
inferredcites →https://doi.org/10.1111/1758-2229.12439openalex-snapshot
Vertical partitioning of freshwater bacterioplankton community in a deep mesotrophic lake with a fully oxygenated hypolimnion (Lake Biwa, Japan)
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02502.xopenalex-snapshot
A freshwater cyanophage whose genome indicates close relationships to photosynthetic marine cyanomyophages
inferredcites →https://doi.org/10.1111/j.1462-2920.2012.02836.xopenalex-snapshot
Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics
inferredcites →https://doi.org/10.1111/j.1574-6941.2012.01451.xopenalex-snapshot
Seasonal dominance of CL500-11 bacterioplankton (phylumChloroflexi) in the oxygenated hypolimnion of Lake Biwa, Japan
inferredcites →https://doi.org/10.1111/j.1758-2229.2010.00208.xopenalex-snapshot
A simple and efficient method for concentration of ocean viruses by chemical flocculation
inferredcites →https://doi.org/10.1126/science.1261498openalex-snapshot
Patterns and ecological drivers of ocean viral communities
inferredcites →https://doi.org/10.1128/aem.02132-17openalex-snapshot
Genomes of Novel Microbial Lineages Assembled from the Sub-Ice Waters of Lake Baikal
inferredcites →https://doi.org/10.1128/aem.02534-06openalex-snapshot
FlavobacteriaBlooms in Four Eutrophic Lakes: Linking Population Dynamics of Freshwater Bacterioplankton to Resource Availability
inferredcites →https://doi.org/10.1128/aem.02742-12openalex-snapshot
Reconstruction of Novel Cyanobacterial Siphovirus Genomes from Mediterranean Metagenomic Fosmids
inferredcites →https://doi.org/10.1128/mbio.00805-16openalex-snapshot
Genomes of Abundant and Widespread Viruses from the Deep Ocean
inferredcites →https://doi.org/10.1128/mmbr.00028-10openalex-snapshot
A Guide to the Natural History of Freshwater Lake Bacteria
inferredcites →https://doi.org/10.1128/mmbr.64.1.69-114.2000openalex-snapshot
Virioplankton: Viruses in Aquatic Ecosystems
inferredcites →https://doi.org/10.1128/msphere.00359-16openalex-snapshot
Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean
inferredcites →https://doi.org/10.1128/msphere.00366-17openalex-snapshot
Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon
inferredcites →https://doi.org/10.1128/msystems.00232-18openalex-snapshot
Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems
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Regularized gene selection in cancer microarray meta-analysis
inferredcites →https://doi.org/10.1186/1471-2105-11-119openalex-snapshot
Prodigal: prokaryotic gene recognition and translation initiation site identification
inferredcites →https://doi.org/10.1186/gb-2013-14-11-r130openalex-snapshot
Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
inferredcites →https://doi.org/10.1186/s40168-018-0563-8openalex-snapshot
Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi
inferredcites →https://doi.org/10.1371/journal.pbio.0030144openalex-snapshot
Three Prochlorococcus Cyanophage Genomes: Signature Features and Ecological Interpretations
inferredcites →https://doi.org/10.1371/journal.pgen.1003987openalex-snapshot
Expanding the Marine Virosphere Using Metagenomics
inferredcites →https://doi.org/10.1371/journal.pgen.1007018openalex-snapshot
Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters
inferredcites →https://doi.org/10.1371/journal.pone.0058209openalex-snapshot
The Diversity of the Limnohabitans Genus, an Important Group of Freshwater Bacterioplankton, by Characterization of 35 Isolated Strains
inferredcites →https://doi.org/10.1371/journal.pone.0150361openalex-snapshot
Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland
inferredcites →https://doi.org/10.1371/journal.pone.0162755openalex-snapshot
Opposite Effects of mGluR1a and mGluR5 Activation on Nucleus Accumbens Medium Spiny Neuron Dendritic Spine Density
inferredcites →https://doi.org/10.2307/1313569openalex-snapshot
Viruses and Nutrient Cycles in the Sea
inferredcites →https://doi.org/10.3354/ame01381openalex-snapshot
Seasonal variation in viral-induced mortality of bacterioplankton in the water column of a large mesotrophic lake (Lake Biwa, Japan)
inferredcites →https://doi.org/10.3389/fmicb.2014.00153openalex-snapshot
Genetic basis for nitrate resistance in Desulfovibrio strains
inferredcites →https://doi.org/10.3389/fmicb.2015.00265openalex-snapshot
Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions
inferredcites →https://doi.org/10.3389/fmicb.2017.01020openalex-snapshot
Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach
inferredcites →https://doi.org/10.3389/fmicb.2018.00803openalex-snapshot
Comparing Microbiome Sampling Methods in a Wild Mammal: Fecal and Intestinal Samples Record Different Signals of Host Ecology, Evolution
inferredcites →https://doi.org/10.3389/fmicb.2018.02891openalex-snapshot
The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes
inferredcites →https://doi.org/10.3390/v8030066openalex-snapshot
Linking Virus Genomes with Host Taxonomy
inferredcites →https://doi.org/10.3391/mbi.2017.8.1.01openalex-snapshot
Raising the flag on marine alien fouling species
inferredcites →https://doi.org/10.4161/bact.28265openalex-snapshot
Tales from a thousand and one phages
inferredcites →https://doi.org/10.4319/lo.2000.45.6.1320openalex-snapshot
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
inferredcites →https://doi.org/10.4319/lo.2003.48.4.1457openalex-snapshot
Lysogeny and virus‐induced mortality of bacterioplankton in surface, deep, and anoxic marine waters
inferredcites →https://doi.org/10.4319/lo.2005.50.4.1339openalex-snapshot
Inhibitory effect of light on methane oxidation in the pelagic water column of a mesotrophic lake (Lake Biwa, Japan)
inferredcites →https://doi.org/10.4319/lo.2006.51.6.2775openalex-snapshot
To sink or to be lysed? Contrasting fate of two large phytoplankton species in Lake Biwa
inferredcites →https://doi.org/10.4319/lo.2009.54.6_part_2.2298openalex-snapshot
Lakes and reservoirs as regulators of carbon cycling and climate
inferredcites →https://doi.org/10.4319/lo.2013.58.1.0276openalex-snapshot
Rates and controls of nitrification in a large oligotrophic lake
inferredcites →https://doi.org/10.4319/lo.2013.58.6.2262openalex-snapshot
Biogeochemical control on fluorescent dissolved organic matter dynamics in a large freshwater lake (Lake Biwa, Japan)
inferredcites →https://doi.org/10.5670/oceanog.2007.58openalex-snapshot
Exploring the Vast Diversity of Marine Viruses
inferredcites →https://doi.org/10.7554/elife.31955openalex-snapshot
A comprehensive and quantitative exploration of thousands of viral genomes
inferredcites →https://doi.org/10.7717/peerj.1165openalex-snapshot
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
inferredcites →https://doi.org/10.7717/peerj.3817openalex-snapshot
Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
inferredcites →https://doi.org/10.7717/peerj.6800openalex-snapshot
Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands
inferredcites →https://doi.org/10.7717/peerj.985openalex-snapshot
VirSorter: mining viral signal from microbial genomic data
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.watres.2021.116907openalex-snapshot
Next generation sequencing approaches to evaluate water and wastewater quality
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