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Compliance with minimum information guidelines in public metabolomics repositories
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/s11306-007-0067-1openalex-snapshot
Standard reporting requirements for biological samples in metabolomics experiments: environmental context
inferredcites →https://doi.org/10.1007/s11306-007-0068-0openalex-snapshot
Minimum reporting standards for plant biology context information in metabolomic studies
inferredcites →https://doi.org/10.1007/s11306-007-0070-6openalex-snapshot
The metabolomics standards initiative (MSI)
inferredcites →https://doi.org/10.1007/s11306-007-0077-zopenalex-snapshot
Standard reporting requirements for biological samples in metabolomics experiments: mammalian/in vivo experiments
inferredcites →https://doi.org/10.1007/s11306-007-0080-4openalex-snapshot
Standard reporting requirements for biological samples in metabolomics experiments: microbial and in vitro biology experiments
inferredcites →https://doi.org/10.1007/s11306-007-0082-2openalex-snapshot
Proposed minimum reporting standards for chemical analysis
inferredcites →https://doi.org/10.1007/s11306-013-0618-6openalex-snapshot
Water, water, every where, but rarely any drop to drink
inferredcites →https://doi.org/10.1007/s11306-014-0738-7openalex-snapshot
The influence of scaling metabolomics data on model classification accuracy
inferredcites →https://doi.org/10.1007/s11306-015-0810-yopenalex-snapshot
COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access
inferredcites →https://doi.org/10.1007/s11306-015-0879-3openalex-snapshot
Data standards can boost metabolomics research, and if there is a will, there is a way
inferredcites →https://doi.org/10.1021/acs.analchem.5b02287openalex-snapshot
PredRet: Prediction of Retention Time by Direct Mapping between Multiple Chromatographic Systems
inferredcites →https://doi.org/10.1038/nbt.2839openalex-snapshot
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
inferredcites →https://doi.org/10.1038/nbt.3597openalex-snapshot
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
inferredcites →https://doi.org/10.1038/nbt0705-833openalex-snapshot
Summary recommendations for standardization and reporting of metabolic analyses
inferredcites →https://doi.org/10.1038/nbt0807-846bopenalex-snapshot
The Metabolomics Standards Initiative
inferredcites →https://doi.org/10.1038/nbt1041openalex-snapshot
A proposed framework for the description of plant metabolomics experiments and their results
inferredcites →https://doi.org/10.1038/nbt1329openalex-snapshot
The minimum information about a proteomics experiment (MIAPE)
inferredcites →https://doi.org/10.1038/ng1201-365openalex-snapshot
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
inferredcites →https://doi.org/10.1038/sdata.2016.18openalex-snapshot
The FAIR Guiding Principles for scientific data management and stewardship
inferredcites →https://doi.org/10.1038/srep38881openalex-snapshot
Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis
inferredcites →https://doi.org/10.1093/bioinformatics/bti236openalex-snapshot
GMD@CSB.DB: the Golm Metabolome Database
inferredcites →https://doi.org/10.1093/bioinformatics/btx169openalex-snapshot
mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data
inferredcites →https://doi.org/10.1093/nar/gks1004openalex-snapshot
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
inferredcites →https://doi.org/10.1093/nar/gkv1042openalex-snapshot
Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools
inferredcites →https://doi.org/10.11610/bmdj.01102openalex-snapshot
European Commission Policy on Open-Access to Scientific Publications and Research Data in Horizon 2020
inferredcites →https://doi.org/10.1186/1471-2105-11-376openalex-snapshot
The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets
inferredcites →https://doi.org/10.1186/1471-2229-11-104openalex-snapshot
MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles
inferredcites →https://doi.org/10.3389/fbioe.2015.00106openalex-snapshot
PhenoMeter: A Metabolome Database Search Tool Using Statistical Similarity Matching of Metabolic Phenotypes for High-Confidence Detection of Functional Links
inferredcites →https://doi.org/10.6084/m9.figshare.c.3803764openalex-snapshot
Compliance with Minimum Information Guidelines in Public Metabolomics Repositories
inferredcites →https://doi.org/10.7554/elife.16800openalex-snapshot
How open science helps researchers succeed
inferredcites →https://doi.org/10.7717/peerj.175openalex-snapshot
Data reuse and the open data citation advantage
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4857592openalex-extracted
Metabolomics Unveils Plant-Microbe Interactions: Advancing Agricultural Sustainability
inferred← citeshttps://doi.org/10.1002/ansa.202000042openalex-snapshot
Cloud‐based archived metabolomics data: A resource for in‐source fragmentation/annotation, meta‐analysis and systems biology
inferred← citeshttps://doi.org/10.1002/elps.202300105openalex-snapshot
Opportunities and challenges for sample preparation and enrichment in mass spectrometry for single‐cell metabolomics
inferred← citeshttps://doi.org/10.1002/jssc.202200164openalex-snapshot
Comprehensive two‐dimensional gas chromatographic platforms comparison for exhaled breath metabolites analysis
inferred← citeshttps://doi.org/10.1002/mas.21603openalex-snapshot
Mass spectrometry‐based forest tree metabolomics
inferred← citeshttps://doi.org/10.1007/978-1-0716-4116-3_29openalex-snapshot
Extracting Knowledge from MS Clinical Metabolomic Data: Processing and Analysis Strategies
inferred← citeshttps://doi.org/10.1007/978-3-030-77252-9_12openalex-snapshot
Metabolomics Data Treatment: Basic Directions of the Full Process
inferred← citeshttps://doi.org/10.1007/978-3-030-97415-2_30-1openalex-snapshot
Ecometabolomics Studies of Bryophytes
inferred← citeshttps://doi.org/10.1007/978-3-031-23243-5_30openalex-snapshot
Ecometabolomics Studies of Bryophytes
inferred← citeshttps://doi.org/10.1007/s00216-026-06355-yopenalex-snapshot
Updates to the Minimum Information Required for A Glycomics Experiment (MIRAGE) guidelines
inferred← citeshttps://doi.org/10.1007/s11306-017-1299-3openalex-snapshot
Critical review of reporting of the data analysis step in metabolomics
inferred← citeshttps://doi.org/10.1007/s11306-018-1465-2openalex-snapshot
RANCM: a new ranking scheme for assigning confidence levels to metabolite assignments in NMR-based metabolomics studies
inferred← citeshttps://doi.org/10.1007/s11306-019-1607-1openalex-snapshot
Metabolomic identification of novel diagnostic biomarkers in ectopic pregnancy
inferred← citeshttps://doi.org/10.1007/s11306-022-01956-xopenalex-snapshot
Critical assessment of chromatographic metadata in publicly available metabolomics data repositories
inferred← citeshttps://doi.org/10.1007/s13668-019-00279-zopenalex-snapshot
Nutritional Metabolomics in Cancer Epidemiology: Current Trends, Challenges, and Future Directions
inferred← citeshttps://doi.org/10.1007/s40572-020-00298-xopenalex-snapshot
Use of Untargeted Metabolomics to Explore the Air Pollution-Related Disease Continuum
inferred← citeshttps://doi.org/10.1016/b978-0-12-812293-8.00012-8openalex-snapshot
Progress in Standardization of Metabolic Phenotyping Data
inferred← citeshttps://doi.org/10.1016/b978-0-12-814872-3.00001-1openalex-snapshot
Introducing Metabolomics
inferred← citeshttps://doi.org/10.1016/j.biocontrol.2021.104663openalex-snapshot
Metabolomic analysis of host plant biochemistry could improve the effectiveness and safety of classical weed biocontrol
inferred← citeshttps://doi.org/10.1016/j.carbon.2021.09.052openalex-snapshot
The lipid composition of few layers graphene and graphene oxide biomolecular corona
inferred← citeshttps://doi.org/10.1016/j.copbio.2018.07.010openalex-snapshot
Challenges, progress and promises of metabolite annotation for LC–MS-based metabolomics
inferred← citeshttps://doi.org/10.1016/j.envint.2022.107159openalex-snapshot
Non-targeted metabolomics and associations with per- and polyfluoroalkyl substances (PFAS) exposure in humans: A scoping review
inferred← citeshttps://doi.org/10.1016/j.envint.2024.108585openalex-snapshot
Innovative analytical methodologies for characterizing chemical exposure with a view to next-generation risk assessment
inferred← citeshttps://doi.org/10.1016/j.foodres.2021.110392openalex-snapshot
Application of untargeted volatile profiling and data driven approaches in wine flavoromics research
inferred← citeshttps://doi.org/10.1016/j.tifs.2022.01.002openalex-snapshot
Alterations in genetically modified crops assessed by omics studies: Systematic review and meta-analysis
inferred← citeshttps://doi.org/10.1016/j.trac.2019.02.033openalex-snapshot
Single-cell metabolomics by mass spectrometry: Advances, challenges, and future applications
inferred← citeshttps://doi.org/10.1016/j.trac.2020.115886openalex-snapshot
Recent advances in single-cell ultra-trace analysis
inferred← citeshttps://doi.org/10.1016/j.ymgme.2023.108115openalex-snapshot
An evaluation of untargeted metabolomics methods to characterize inborn errors of metabolism
inferred← citeshttps://doi.org/10.1021/acs.chemrestox.9b00196openalex-snapshot
Methods and Challenges for Computational Data Analysis for DNA Adductomics
inferred← citeshttps://doi.org/10.1021/acs.jproteome.1c00841openalex-snapshot
Is Current Practice Adhering to Guidelines Proposed for Metabolite Identification in LC-MS Untargeted Metabolomics? A Meta-Analysis of the Literature
inferred← citeshttps://doi.org/10.1021/acsomega.9b03708openalex-snapshot
Crowd-Sourced Chemistry: Considerations for Building a Standardized Database to Improve Omic Analyses
inferred← citeshttps://doi.org/10.1038/sdata.2017.138openalex-snapshot
A decade after the metabolomics standards initiative it's time for a revision
inferred← citeshttps://doi.org/10.1038/sdata.2018.179openalex-snapshot
Computational workflow to study the seasonal variation of secondary metabolites in nine different bryophytes
inferred← citeshttps://doi.org/10.1039/d3nh00510kopenalex-snapshot
Sources of biases in the in vitro testing of nanomaterials: the role of the biomolecular corona
inferred← citeshttps://doi.org/10.1079/9781789247534.0004openalex-snapshot
Plant Metabolomics: The Great Potential of Plant Metabolomics in Big Data Biology
inferred← citeshttps://doi.org/10.1080/00032719.2021.2019758openalex-snapshot
Principal Component Analysis (PCA) Loading and Statistical Tests for Nuclear Magnetic Resonance (NMR) Metabolomics Involving Multiple Study Groups
inferred← citeshttps://doi.org/10.1088/1752-7163/aba130openalex-snapshot
A benchmarking protocol for breath analysis: the peppermint experiment
inferred← citeshttps://doi.org/10.1093/exposome/osab003openalex-snapshot
Analytical strategies for chemical exposomics: exploring limits and feasibility
inferred← citeshttps://doi.org/10.1093/gigascience/giy102openalex-snapshot
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments
inferred← citeshttps://doi.org/10.1093/glycob/cwac021openalex-snapshot
The minimum information required for a glycomics experiment (MIRAGE): reporting guidelines for capillary electrophoresis
inferred← citeshttps://doi.org/10.1093/pcp/pcab173openalex-snapshot
Development of RIKEN Plant Metabolome MetaDatabase
inferred← citeshttps://doi.org/10.1101/2020.07.27.20162958openalex-snapshot
Metabolomics differentiate cancer from non-cancer pleural effusions based on steroid lipids and acyl carnitines
inferred← citeshttps://doi.org/10.1101/2021.12.20.473496openalex-snapshot
Boosting annotation in nutrimetabolomics by Feature-Based Molecular Networking: analytical and computational strategies applied to human urine samples from an untargeted LC-MS/MS based bilberry-blueberry intervention study
inferred← citeshttps://doi.org/10.1101/2024.04.02.587699openalex-snapshot
Estimating essential phenotypic and molecular traits from integrative biodiversity data
inferred← citeshttps://doi.org/10.1136/bmjopen-2019-031238openalex-snapshot
Examining the predictive accuracy of metabolomics for small-for-gestational-age babies: a systematic review
inferred← citeshttps://doi.org/10.1155/2020/2930347openalex-snapshot
Metabolic Biomarkers of Squamous Cell Carcinoma of the Aerodigestive Tract: A Systematic Review and Quality Assessment
inferred← citeshttps://doi.org/10.1155/jfbc/6588161openalex-snapshot
Beyond Basmati: Metabolomic Profiling of Kalanamak GI Rice for Valorizing Traditional Aroma and Health‐Promoting Bioactivities
inferred← citeshttps://doi.org/10.1177/1469066720918446openalex-snapshot
Data normalization strategies in metabolomics: Current challenges, approaches, and tools
inferred← citeshttps://doi.org/10.1186/s12870-021-03200-5openalex-snapshot
Altered metabolomic states elicited by Flg22 and FlgII-28 in Solanum lycopersicum: intracellular perturbations and metabolite defenses
inferred← citeshttps://doi.org/10.1530/jme-18-0055openalex-snapshot
Integrated omics: tools, advances and future approaches
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Advancements in Metabolomics: Illuminating Plant-Microbe Interactions for Enhanced Ecosystems and Agricultural Productivity
inferred← citeshttps://doi.org/10.22541/au.171934398.85448535/v1openalex-snapshot
Decoding Nature's Conversations: Metabolomics and the Intriguing World of Plant-Microbe Interactions
inferred← citeshttps://doi.org/10.31219/osf.io/43uebopenalex-snapshot
Metabolomics in Plant-Microbe Interactions: Unveiling Chemical Dialogues and Advancing Agriculture
inferred← citeshttps://doi.org/10.31219/osf.io/4dtmcopenalex-snapshot
Software that target metadata determine if science is at sea or in a fishbowl
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Invited review: Multiomics insights into the molecular and regulatory mechanisms underlying bovine mastitis
inferred← citeshttps://doi.org/10.3389/fmicb.2019.02550openalex-snapshot
Comparative Genomics and Metabolomics Analyses of Clavulanic Acid-Producing Streptomyces Species Provides Insight Into Specialized Metabolism
inferred← citeshttps://doi.org/10.3389/fmolb.2022.930204openalex-snapshot
An anchored experimental design and meta-analysis approach to address batch effects in large-scale metabolomics
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Lipopolysaccharides from Ralstonia solanacearum induce a broad metabolomic response in Solanum lycopersicum
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Cancers in Agreement? Exploring the Cross-Talk of Cancer Metabolomic and Transcriptomic Landscapes Using Publicly Available Data
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Metabolomic Profiling of the Host Response of Tomato (Solanum lycopersicum) Following Infection by Ralstonia solanacearum
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Untargeted In Silico Compound Classification—A Novel Metabolomics Method to Assess the Chemodiversity in Bryophytes
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Untargeted Metabolomic Biomarker Discovery for the Detection of Ectopic Pregnancy
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Specialized Metabolites from Ribosome Engineered Strains of Streptomyces clavuligerus
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A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research
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A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics
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Systematic Review of NMR-Based Metabolomics Practices in Human Disease Research
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Animal Metabolite Database: Metabolite Concentrations in Animal Tissues and Convenient Comparison of Quantitative Metabolomic Data
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A Tool to Encourage Minimum Reporting Guideline Uptake for Data Analysis in Metabolomics
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Experimental Design and Sample Preparation in Forest Tree Metabolomics
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Multi-Platform Metabolomics for Fraud Detection in Spices and Botanical Food Supplements: From Fingerprint Acquisition to Decision-Grade Evidence
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Untargeted Metabolomics for Integrative Taxonomy: Metabolomics, DNA Marker-Based Sequencing, and Phenotype Bioimaging
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Ontology-Based Metabolomics Data Integration with Quality Control
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MassBase: A large-scaled depository of mass spectrometry datasets for metabolome analysis
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Application d’algorithmes de machine learning pour l’exploitation de données omiques en oncologie
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