On the public citation graph

Metabolomics Unveils Plant-Microbe Interactions: Advancing Agricultural Sustainability

https://doi.org/10.2139/ssrn.4857592
0 signed · 118 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471142727.mb3004s114openalex-extracted
Metabolomics by Gas Chromatography–Mass Spectrometry: Combined Targeted and Untargeted Profiling
inferredcites →https://doi.org/10.1002/9781119312994.apr0471openalex-extracted
Spatially Resolved Plant Metabolomics
inferredcites →https://doi.org/10.1002/9781444339956.ch11openalex-extracted
Spatially Resolved Plant Metabolomics
inferredcites →https://doi.org/10.1002/elps.200800512openalex-extracted
CE‐MS in metabolomics
inferredcites →https://doi.org/10.1002/elps.201500417openalex-extracted
Updates in metabolomics tools and resources: 2014–2015
inferredcites →https://doi.org/10.1002/elps.201800428openalex-extracted
Tools and resources for metabolomics research community: A 2017–2018 update
inferredcites →https://doi.org/10.1002/jms.1777openalex-extracted
MassBank: a public repository for sharing mass spectral data for life sciences
inferredcites →https://doi.org/10.1002/mas.20032openalex-extracted
Mass spectrometry in metabolome analysis
inferredcites →https://doi.org/10.1002/pca.1187openalex-extracted
An introduction to liquid chromatography–mass spectrometry instrumentation applied in plant metabolomic analyses
inferredcites →https://doi.org/10.1007/978-1-4939-7819-9_17openalex-extracted
Mass Spectrometry Imaging (MSI) for Plant Metabolomics
inferredcites →https://doi.org/10.1007/978-3-030-28954-6openalex-extracted
Explainable AI: Interpreting, Explaining and Visualizing Deep Learning
inferredcites →https://doi.org/10.1007/s11306-007-0070-6openalex-extracted
The metabolomics standards initiative (MSI)
inferredcites →https://doi.org/10.1007/s11306-013-0618-6openalex-extracted
Water, water, every where, but rarely any drop to drink
inferredcites →https://doi.org/10.1007/s11306-014-0670-xopenalex-extracted
Comparative metabolomics and transcriptomics of plant response to Tomato yellow leaf curl virus infection in resistant and susceptible tomato cultivars
inferredcites →https://doi.org/10.1007/s11306-019-1608-0openalex-extracted
The application of artificial neural networks in metabolomics: a historical perspective
inferredcites →https://doi.org/10.1007/s44154-022-00034-5openalex-extracted
Metabolic signatures of Arabidopsis thaliana abiotic stress responses elucidate patterns in stress priming, acclimation, and recovery
inferredcites →https://doi.org/10.1016/bs.abr.2020.09.018openalex-extracted
Metabolomics in plant-microbe interactions in the roots
inferredcites →https://doi.org/10.1016/j.aca.2015.02.012openalex-extracted
A tutorial review: Metabolomics and partial least squares-discriminant analysis – a marriage of convenience or a shotgun wedding
inferredcites →https://doi.org/10.1016/j.cbpa.2009.09.022openalex-extracted
Integrated omics approaches in plant systems biology
inferredcites →https://doi.org/10.1016/j.chroma.2007.02.065openalex-extracted
Metabolome analysis by capillary electrophoresis–mass spectrometry
inferredcites →https://doi.org/10.1016/j.chroma.2014.10.091openalex-extracted
Current approaches and challenges for the metabolite profiling of complex natural extracts
inferredcites →https://doi.org/10.1016/j.copbio.2015.10.004openalex-extracted
Matrix assisted laser desorption/ionization-mass spectrometry imaging (MALDI-MSI) for direct visualization of plant metabolites in situ
inferredcites →https://doi.org/10.1016/j.csbj.2020.09.033openalex-extracted
Deep metabolome: Applications of deep learning in metabolomics
inferredcites →https://doi.org/10.1016/j.jasms.2010.04.003openalex-extracted
Dealing with the unknown: Metabolomics and Metabolite Atlases
inferredcites →https://doi.org/10.1016/j.pbi.2003.12.003openalex-extracted
Metabolite profiling as an aid to metabolic engineering in plants
inferredcites →https://doi.org/10.1016/j.pbi.2015.05.023openalex-extracted
What the transcriptome does not tell — proteomics and metabolomics are closer to the plants’ patho-phenotype
inferredcites →https://doi.org/10.1016/j.plantsci.2009.01.017openalex-extracted
Fungal infection-induced metabolites in Brassica rapa
inferredcites →https://doi.org/10.1016/j.tibtech.2011.02.001openalex-extracted
NMR-based plant metabolomics: where do we stand, where do we go?
inferredcites →https://doi.org/10.1016/j.tibtech.2011.11.002openalex-extracted
Unraveling plant–microbe interactions: can multi-species transcriptomics help?
inferredcites →https://doi.org/10.1016/j.tplants.2016.01.008openalex-extracted
Metabolomics in the Rhizosphere: Tapping into Belowground Chemical Communication
inferredcites →https://doi.org/10.1016/j.tplants.2016.04.009openalex-extracted
Omic Relief for the Biotically Stressed: Metabolomics of Plant Biotic Interactions
inferredcites →https://doi.org/10.1016/j.tplants.2017.09.003openalex-extracted
Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?
inferredcites →https://doi.org/10.1016/s0021-9258(18)37752-4openalex-extracted
Quantification of carbon fluxes through the tricarboxylic acid cycle in early germinating lettuce embryos.
inferredcites →https://doi.org/10.1021/ac051437yopenalex-extracted
XCMS: Processing Mass Spectrometry Data for Metabolite Profiling Using Nonlinear Peak Alignment, Matching, and Identification
inferredcites →https://doi.org/10.1021/ac9019522openalex-extracted
FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry
inferredcites →https://doi.org/10.1021/acs.analchem.6b01214openalex-extracted
xMSannotator: An R Package for Network-Based Annotation of High-Resolution Metabolomics Data
inferredcites →https://doi.org/10.1021/acs.analchem.7b02380openalex-extracted
Systems-Level Annotation of a Metabolomics Data Set Reduces 25 000 Features to Fewer than 1000 Unique Metabolites
inferredcites →https://doi.org/10.1021/acs.analchem.7b04424openalex-extracted
METLIN: A Technology Platform for Identifying Knowns and Unknowns
inferredcites →https://doi.org/10.1038/nature03145openalex-extracted
Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds
inferredcites →https://doi.org/10.1038/nature14539openalex-extracted
Deep learning
inferredcites →https://doi.org/10.1038/nbt.4101openalex-extracted
Metabolomics activity screening for identifying metabolites that modulate phenotype
inferredcites →https://doi.org/10.1038/nprot.2006.59openalex-extracted
Gas chromatography mass spectrometry–based metabolite profiling in plants
inferredcites →https://doi.org/10.1038/nprot.2007.95openalex-extracted
Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry
inferredcites →https://doi.org/10.1038/nprot.2010.50openalex-extracted
Global metabolic profiling procedures for urine using UPLC–MS
inferredcites →https://doi.org/10.1038/nrmicro3109openalex-extracted
Going back to the roots: the microbial ecology of the rhizosphere
inferredcites →https://doi.org/10.1038/s41396-018-0188-8openalex-extracted
Observed metabolic asymmetry within soybean root nodules reflects unexpected complexity in rhizobacteria-legume metabolite exchange
inferredcites →https://doi.org/10.1038/s42003-019-0440-4openalex-extracted
Combined network analysis and machine learning allows the prediction of metabolic pathways from tomato metabolomics data
inferredcites →https://doi.org/10.1038/sdata.2017.137openalex-extracted
Compliance with minimum information guidelines in public metabolomics repositories
inferredcites →https://doi.org/10.1073/pnas.1722335115openalex-extracted
MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health
inferredcites →https://doi.org/10.1073/pnas.2121531119openalex-extracted
Reimport of carbon from cytosolic and vacuolar sugar pools into the Calvin–Benson cycle explains photosynthesis labeling anomalies
inferredcites →https://doi.org/10.1073/pnas.262672599openalex-extracted
Extensive and specific responses of a eukaryote to bacterial quorum-sensing signals
inferredcites →https://doi.org/10.1074/jbc.270.22.13147openalex-extracted
Quantification of Compartmented Metabolic Fluxes in Maize Root Tips Using Isotope Distribution from 13C- or 14C-Labeled Glucose
inferredcites →https://doi.org/10.1074/jbc.m303432200openalex-extracted
A Flux Model of Glycolysis and the Oxidative Pentosephosphate Pathway in Developing Brassica napus Embryos
inferredcites →https://doi.org/10.1093/jxb/eri010openalex-extracted
Metabolite fingerprinting and profiling in plants using NMR
inferredcites →https://doi.org/10.1093/jxb/err382openalex-extracted
Strategies for investigating the plant metabolic network with steady-state metabolic flux analysis: lessons from an Arabidopsis cell culture and other systems
inferredcites →https://doi.org/10.1093/jxb/ery438openalex-extracted
Metabolic niches in the rhizosphere microbiome: new tools and approaches to analyse metabolic mechanisms of plant–microbe nutrient exchange
inferredcites →https://doi.org/10.1093/nar/gkx1089openalex-extracted
HMDB 4.0: the human metabolome database for 2018
inferredcites →https://doi.org/10.1093/nar/gky310openalex-extracted
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
inferredcites →https://doi.org/10.1093/plphys/kiab076openalex-extracted
The metabolic origins of non-photorespiratory CO2 release during photosynthesis: a metabolic flux analysis
inferredcites →https://doi.org/10.1093/plphys/kiad507openalex-extracted
Daylength variation affects growth, photosynthesis, leaf metabolism, partitioning, and metabolic fluxes
inferredcites →https://doi.org/10.1097/01.ftd.0000179845.53213.39openalex-extracted
METLIN
inferredcites →https://doi.org/10.1098/rsif.2017.0387openalex-extracted
Opportunities and obstacles for deep learning in biology and medicine
inferredcites →https://doi.org/10.1098/rsta.2015.0202openalex-extracted
Principal component analysis: a review and recent developments
inferredcites →https://doi.org/10.1104/pp.102.007765openalex-extracted
Carbon Export from Arbuscular Mycorrhizal Roots Involves the Translocation of Carbohydrate as well as Lipid
inferredcites →https://doi.org/10.1104/pp.15.00310openalex-extracted
The Petunia GRAS Transcription Factor ATA/RAM1 Regulates Symbiotic Gene Expression and Fungal Morphogenesis in Arbuscular Mycorrhiza
inferredcites →https://doi.org/10.1104/pp.16.01942openalex-extracted
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants
inferredcites →https://doi.org/10.1111/1574-6968.12406openalex-extracted
Enhanced rhizosphere colonization of beneficial Bacillus amyloliquefaciens SQR9 by pathogen infection
inferredcites →https://doi.org/10.1111/j.1365-313x.2005.02649.xopenalex-extracted
Measuring multiple fluxes through plant metabolic networks
inferredcites →https://doi.org/10.1111/j.1399-3054.2007.01001.xopenalex-extracted
Metabolomic technologies and their application to the study of plants and plant–host interactions
inferredcites →https://doi.org/10.1111/j.1469-8137.2008.02578.xopenalex-extracted
Transcription factor MYC2 is involved in priming for enhanced defense during rhizobacteria‐induced systemic resistance in Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/nph.14955openalex-extracted
Microbe‐induced plant volatiles
inferredcites →https://doi.org/10.1111/nph.19730openalex-extracted
The oxidative pentose phosphate pathway in photosynthesis: a tale of two shunts
inferredcites →https://doi.org/10.1111/tpj.12114openalex-extracted
Induced resistance in maize is based on organ‐specific defence responses
inferredcites →https://doi.org/10.1111/tpj.12465openalex-extracted
Targeting novel chemical and constitutive primed metabolites against P lectosphaerella cucumerina
inferredcites →https://doi.org/10.1111/tpj.12964openalex-extracted
An untargeted global metabolomic analysis reveals the biochemical changes underlying basal resistance and priming in Solanum lycopersicum, and identifies 1‐methyltryptophan as a metabolite involved in plant responses to Botrytis cinerea and Pseudomonas syringae
inferredcites →https://doi.org/10.1111/tpj.13639openalex-extracted
Metabolite profiling of non‐sterile rhizosphere soil
inferredcites →https://doi.org/10.1126/science.1142502openalex-extracted
Getting Closer to the Whole Picture
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110617-062406openalex-extracted
Plant Secondary Metabolite Diversity and Species Interactions
inferredcites →https://doi.org/10.1146/annurev.arplant.54.031902openalex-extracted
METABOLOMICS IN SYSTEMS BIOLOGY
inferredcites →https://doi.org/10.1146/annurev.arplant.58.032806.103822openalex-extracted
Metabolic Flux Analysis in Plants: From Intelligent Design to Rational Engineering
inferredcites →https://doi.org/10.1146/annurev.micro.091208.073504openalex-extracted
Plants, Mycorrhizal Fungi, and Bacteria: A Network of Interactions
inferredcites →https://doi.org/10.1146/annurev.micro.62.081307.162918openalex-extracted
Plant-Growth-Promoting Rhizobacteria
inferredcites →https://doi.org/10.1155/2015/354671openalex-extracted
Metabolomics for Biomarker Discovery: Moving to the Clinic
inferredcites →https://doi.org/10.1186/1471-2105-11-395openalex-extracted
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
inferredcites →https://doi.org/10.1186/1471-2164-15-73openalex-extracted
Combining metabolomics and transcriptomics to characterize tanshinone biosynthesis in Salvia miltiorrhiza
inferredcites →https://doi.org/10.1186/s13007-018-0378-4openalex-extracted
Volatilomics: a non-invasive technique for screening plant phenotypic traits
inferredcites →https://doi.org/10.12746/swrccc.v11i46.1139openalex-extracted
Artificial intelligence in biomedical research
inferredcites →https://doi.org/10.1371/journal.pcbi.1004947openalex-extracted
Ten Simple Rules for Taking Advantage of Git and GitHub
inferredcites →https://doi.org/10.1371/journal.pone.0060769openalex-extracted
Pattern-Triggered Immunity Suppresses Programmed Cell Death Triggered by Fumonisin B1
inferredcites →https://doi.org/10.1371/journal.pone.0181900openalex-extracted
Chicken hepatic response to chronic heat stress using integrated transcriptome and metabolome analysis
inferredcites →https://doi.org/10.1590/0074-0276140043openalex-extracted
Metabolomics in the fight against malaria
inferredcites →https://doi.org/10.1590/sajs.2013/20120005openalex-extracted
Plant metabolomics: A new frontier in phytochemical analysis
inferredcites →https://doi.org/10.2174/092986713805288932openalex-extracted
Plant Metabolomics: From Holistic Data to Relevant Biomarkers
inferredcites →https://doi.org/10.2174/138920211797248619openalex-extracted
Microbial Metabolomics
inferredcites →https://doi.org/10.2174/157340910791760055openalex-extracted
Metabolomics of Medicinal Plants: The Importance of Multivariate Analysis of Analytical Chemistry Data
inferredcites →https://doi.org/10.2174/2213235x11301010092openalex-extracted
Multivariate Analysis in Metabolomics
inferredcites →https://doi.org/10.3389/fmicb.2014.00148openalex-extracted
Unraveling the plant microbiome: looking back and future perspectives
inferredcites →https://doi.org/10.3389/fmicb.2015.00486openalex-extracted
Pivotal roles of phyllosphere microorganisms at the interface between plant functioning and atmospheric trace gas dynamics
inferredcites →https://doi.org/10.3389/fmicb.2015.00598openalex-extracted
Metabolic transition in mycorrhizal tomato roots
inferredcites →https://doi.org/10.3389/fphys.2019.00745openalex-extracted
Transcriptome and Metabolome Reprogramming in Tomato Plants by Trichoderma harzianum strain T22 Primes and Enhances Defense Responses Against Aphids
inferredcites →https://doi.org/10.3389/fpls.2013.00073openalex-extracted
Recent Progress in the Development of Metabolome Databases for Plant Systems Biology
inferredcites →https://doi.org/10.3389/fpls.2013.00356openalex-extracted
Plant growth-promoting rhizobacteria and root system functioning
inferredcites →https://doi.org/10.3389/fpls.2016.00537openalex-extracted
Flux Balance Analysis of Plant Metabolism: The Effect of Biomass Composition and Model Structure on Model Predictions
inferredcites →https://doi.org/10.3389/fpls.2017.01124openalex-extracted
Multi-Omics and Integrated Network Analyses Reveal New Insights into the Systems Relationships between Metabolites, Structural Genes, and Transcriptional Regulators in Developing Grape Berries (Vitis vinifera L.) Exposed to Water Deficit
inferredcites →https://doi.org/10.3389/fpls.2018.00112openalex-extracted
The Chemistry of Plant–Microbe Interactions in the Rhizosphere and the Potential for Metabolomics to Reveal Signaling Related to Defense Priming and Induced Systemic Resistance
inferredcites →https://doi.org/10.3389/fpls.2024.1292054openalex-extracted
A review of artificial intelligence-assisted omics techniques in plant defense: current trends and future directions
inferredcites →https://doi.org/10.3390/biom12070939openalex-extracted
Re-Programing Glucose Catabolism in the Microalga Chlorella sorokiniana under Light Condition
inferredcites →https://doi.org/10.3390/ijms23105716openalex-extracted
Reprogramming of Plant Central Metabolism in Response to Abiotic Stresses: A Metabolomics View
inferredcites →https://doi.org/10.3390/ijms25115882openalex-extracted
Elevated Temperature Effects on Protein Turnover Dynamics in Arabidopsis thaliana Seedlings Revealed by 15N-Stable Isotope Labeling and ProteinTurnover Algorithm
inferredcites →https://doi.org/10.3390/metabo10020052openalex-extracted
Metabolomics as an Emerging Tool for the Study of Plant–Pathogen Interactions
inferredcites →https://doi.org/10.3390/metabo10050210openalex-extracted
Metabolic Profiling of PGPR-Treated Tomato Plants Reveal Priming-Related Adaptations of Secondary Metabolites and Aromatic Amino Acids
inferredcites →https://doi.org/10.3390/metabo10060243openalex-extracted
Machine Learning Applications for Mass Spectrometry-Based Metabolomics
inferredcites →https://doi.org/10.3390/metabo8010008openalex-extracted
Structure Elucidation of Unknown Metabolites in Metabolomics by Combined NMR and MS/MS Prediction
inferredcites →https://doi.org/10.3390/stresses3010008openalex-extracted
Dynamic Metabolic Changes in Arabidopsis Seedlings under Hypoxia Stress and Subsequent Reoxygenation Recovery
inferredcites →https://doi.org/10.4103/aca.aca_94_19openalex-extracted
Application of Student's t-test, Analysis of Variance, and Covariance
inferredcites →https://doi.org/10.4137/bmi.s29511openalex-extracted
Genomic, Proteomic, and Metabolomic Data Integration Strategies
inferredcites →https://doi.org/10.48550/arxiv.1907.06831openalex-extracted
Evaluating Explanation Without Ground Truth in Interpretable Machine Learning
inferredcites →https://doi.org/10.1146/annurev.arplant.54.031902.135014openalex-snapshot
Metabolomics in Systems Biology
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.