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Fossilization causes organisms to appear erroneously primitive by distorting evolutionary trees

https://doi.org/10.1038/srep02545
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The cambrian evolutionary ‘explosion’ recalibrated
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Missing data and the design of phylogenetic analyses
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Squamate phylogeny, taxon sampling, and data congruence
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Rocks and clocks: calibrating the Tree of Life using fossils and molecules
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Inferring complex phytogenies
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Non-random decay of chordate characters causes bias in fossil interpretation
inferredcites →https://doi.org/10.1080/10635150390218330openalex-snapshot
Missing Data, Incomplete Taxa, and Phylogenetic Accuracy
inferredcites →https://doi.org/10.1080/10635150500433649openalex-snapshot
Tenrec Phylogeny and the Noninvasive Extraction of Nuclear DNA
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The Adequacy of Morphology for Reconstructing the Early History of Placental Mammals
inferredcites →https://doi.org/10.1080/10635150701627296openalex-snapshot
Fossils Impact as Hard as Living Taxa in Parsimony Analyses of Morphology
inferredcites →https://doi.org/10.1080/10635150802033022openalex-snapshot
Morphology, Paleontology, and Placental Mammal Phylogeny
inferredcites →https://doi.org/10.1080/106351598260635openalex-snapshot
Does Adding Characters with Missing Data Increase or Decrease Phylogenetic Accuracy?
inferredcites →https://doi.org/10.1093/molbev/msh182openalex-snapshot
Phylogenomics of Eukaryotes: Impact of Missing Data on Large Alignments
inferredcites →https://doi.org/10.1093/molbev/msl150openalex-snapshot
Paleontological Evidence to Date the Tree of Life
inferredcites →https://doi.org/10.1093/oso/9780195172348.001.0001openalex-snapshot
Assembling the Tree of Life
inferredcites →https://doi.org/10.1093/sysbio/40.4.458openalex-snapshot
When are Fossils Better than Extant Taxa in Phylogenetic Analysis?
inferredcites →https://doi.org/10.1093/sysbio/44.4.501openalex-snapshot
Coping with Abundant Missing Entries in Phylogenetic Inference Using Parsimony
inferredcites →https://doi.org/10.1093/sysbio/syp017openalex-snapshot
The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference
inferredcites →https://doi.org/10.1093/sysbio/syq023openalex-snapshot
Identifying Cliques of Convergent Characters: Concerted Evolution in the Cormorants and Shags
inferredcites →https://doi.org/10.1093/sysbio/syr025openalex-snapshot
Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data
inferredcites →https://doi.org/10.1093/sysbio/syr107openalex-snapshot
Best Practices for Justifying Fossil Calibrations
inferredcites →https://doi.org/10.1098/rspb.2010.1641openalex-snapshot
Decay of vertebrate characters in hagfish and lamprey (Cyclostomata) and the implications for the vertebrate fossil record
inferredcites →https://doi.org/10.1111/j.1096-0031.2008.00217.xopenalex-snapshot
TNT, a free program for phylogenetic analysis
inferredcites →https://doi.org/10.1111/j.1096-0031.2011.00375.xopenalex-snapshot
Misleading results of likelihood‐based phylogenetic analyses in the presence of missing data
inferredcites →https://doi.org/10.1111/j.1475-4983.2010.01019.xopenalex-snapshot
Taphonomy and affinity of an enigmatic Silurian vertebrate, Jamoytius kerwoodi White
inferredcites →https://doi.org/10.1111/pala.12037openalex-snapshot
Atlas of vertebrate decay: a visual and taphonomic guide to fossil interpretation
inferredcites →https://doi.org/10.1146/annurev.es.20.110189.002243openalex-snapshot
The Importance of Fossils in Phylogeny Reconstruction
inferredcites →https://doi.org/10.1371/journal.pone.0042925openalex-snapshot
Highly Incomplete Taxa Can Rescue Phylogenetic Analyses from the Negative Impacts of Limited Taxon Sampling
inferredcites →https://doi.org/10.1666/0094-8373(2004)030<0614:rhpeci>2.0.co;2openalex-snapshot
Reassessing hominoid phylogeny: evaluating congruence in the morphological and temporal data
inferredcites →https://doi.org/10.1671/0272-4634(2003)023[0297:iticap]2.0.co;2openalex-snapshot
Incomplete taxa, incomplete characters, and phylogenetic accuracy: is there a missing data problem?
inferredcites →https://doi.org/10.2307/1467007openalex-snapshot
Phylogeny of the Spiny Lizards (Sceloporus) Based on Molecular and Morphological Evidence
inferredcites →https://doi.org/10.2307/2992240openalex-snapshot
When are Fossils better than Extant Taxa in Phylogenetic Analysis?
inferredcites →https://doi.org/10.5860/choice.42-4627openalex-snapshot
Assembling the tree of life

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Impact of increasing morphological information by micro-CT scanning on the phylogenetic placement of Darwin wasps (Hymenoptera, Ichneumonidae) in amber
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Application of blender modeling techniques in the restoration of 3D morphology of fossil insects reconstructed via micro-computed tomography
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The Systematics of Cervidae
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Evolution of the batoidea pectoral fin skeleton: convergence, modularity, and integration driving disparity trends
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The effects of ordered multistate morphological characters on phylogenetic analyses of eutherian mammals
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Transient presence of a teiid lizard in the European Eocene suggests transatlantic dispersal and rapid extinction
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Exploring the evolution and terrestrialization of scorpions (Arachnida: Scorpiones) with rocks and clocks
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Isopod crustacean fossils from the Cenomanian stratotype: five new species in suborders Cymothoida, Asellota and Valvifera
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Vertebrate coprolites (fossil faeces): An underexplored Konservat-Lagerstätte
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Dating Tips for Divergence-Time Estimation
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Effects of missing data on topological inference using a Total Evidence approach
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Waking the undead: Implications of a soft explosive model for the timing of placental mammal diversification
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Tip-dating and the origin of Telluraves
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The role of preservation on the quantification of morphology and patterns of disparity within Paleozoic echinoderms
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A diverse assemblage of Permian echinoids (Echinodermata, Echinoidea) and implications for character evolution in early crown group echinoids
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Using experimental decay of modern forms to reconstruct the early evolution and morphology of fossil enteropneusts
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Character selection and the quantification of morphological disparity
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Completeness of the eutherian mammal fossil record and implications for reconstructing mammal evolution through the Cretaceous/Paleogene mass extinction
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The inseparability of sampling and time and its influence on attempts to unify the molecular and fossil records
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Experimental Decay of Soft Tissues
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Plenty of fish in the tree
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Morphological and molecular convergences in mammalian phylogenetics
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Bayesian molecular clock dating of species divergences in the genomics era
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Exceptional fossil preservation and evolution of the ray-finned fish brain
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Molecular phylogenies map to biogeography better than morphological ones
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Preservation and phylogeny of Cambrian ecdysozoans tested by experimental decay of Priapulus
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New varanid remains from the Miocene (MN4–MN5) of France: inferring fossil lizard phylogeny from subsets of large morphological data sets
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A new dryolestid fossil from the Late Jurassic illuminates molar root structure of dryolestids
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The phylogenetic relationships and evolutionary history of the armoured dinosaurs (Ornithischia: Thyreophora)
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Macroevolution of Animal Body Plans: Is There Science after the Tree?
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Protein Structure Characters in the Light of Phylogenetic Systematics
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The Fossil Record of the Pancrustacea
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Death is on Our Side: Paleontological Data Drastically Modify Phylogenetic Hypotheses
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Phylogenetic Signal and Bias in Paleontology
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Impacts of Taxon-Sampling Schemes on Bayesian Tip Dating Under the Fossilized Birth-Death Process
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Practical Guide and Review of Fossil Tip-Dating in Phylogenetics
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Methods for the Quantitative Comparison of Molecular Estimates of Clade Age and the Fossil Record
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Phylogeny, Paleontology, and Primates: Do Incomplete Fossils Bias the Tree of Life?
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Bias and Sensitivity in the Placement of Fossil Taxa Resulting from Interpretations of Missing Data
inferred← citeshttps://doi.org/10.1093/sysbio/syv015openalex-snapshot
Taxonomy and Phylogeny Can Yield Comparable Results in Comparative Paleontological Analyses
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Measuring Stratigraphic Congruence Across Trees, Higher Taxa, and Time
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Dental data perform relatively poorly in reconstructing mammal phylogenies: Morphological partitions evaluated with molecular benchmarks
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The Effect of Fossil Sampling on the Estimation of Divergence Times with the Fossilized Birth–Death Process
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A Simulation-Based Evaluation of Tip-Dating Under the Fossilized Birth–Death Process
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Craniodental and Postcranial Characters of Non-Avian Dinosauria Often Imply Different Trees
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Phylogenetic incongruence and homoplasy in the appendages and bodies of arthropods: why broad character sampling is best
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Parsimony, not Bayesian analysis, recovers more stratigraphically congruent phylogenetic trees
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Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets
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How many characters are needed to reconstruct a phylogeny?
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The first iguanian lizard from the Mesozoic of Africa
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Congruence, fossils and the evolutionary tree of rodents and lagomorphs
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A mathematical description of fossilization
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Differences between hard and soft phylogenetic data
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Improvements in the fossil record may largely resolve current conflicts between morphological and molecular estimates of mammal phylogeny
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Rapid morphological evolution in placental mammals post-dates the origin of the crown group
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Does exceptional preservation distort our view of disparity in the fossil record?
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Fossilization can mislead analyses of phenotypic disparity
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Mammal madness: is the mammal tree of life not yet resolved?
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The evolution of methods for establishing evolutionary timescales
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The making of calibration sausage exemplified by recalibrating the transcriptomic timetree of jawed vertebrates
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Impacts of Taxon-Sampling Schemes on Bayesian Molecular Dating under the Unresolved Fossilized Birth-Death Process
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Inaccurate fossil placement does not compromise tip-dated divergence times
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A Simulation-Based Evaluation of Total-Evidence Dating Under the Fossilized Birth-Death Process
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Distinguishing passive and driven trait evolution in the presence of boundaries
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JOINED AT THE HIP: LINKED CHARACTERS AND THE PROBLEM OF MISSING DATA IN STUDIES OF DISPARITY
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Sampling diverse characters improves phylogenies: Craniodental and postcranial characters of vertebrates often imply different trees
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Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution
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Principal component analysis as an alternative treatment for morphometric characters: phylogeny of caseids as a case study
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Comparative experimental taphonomy of eight marine arthropods indicates distinct differences in preservation potential
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The impact of fossil stratigraphic ranges on tip‐calibration, and the accuracy and precision of divergence time estimates
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Fossilization processes have little impact on tip‐calibrated divergence time analyses
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Skeletal and soft tissue completeness of the acanthodian fossil record
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Inaccurate fossil placement does not compromise tip‐dated divergence times
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The dynamics of stem and crown groups
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INACCURATE FOSSIL PLACEMENT DOES NOT COMPROMISE TIP-DATED DIVERGENCE TIMES
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A Paleozoic stem hagfish Myxinikela siroka — revised anatomy and implications for evolution of the living jawless vertebrate lineages
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Integrating Paleontological and Phylogenetic Approaches to Macroevolution
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Frameworks for Interpreting the Early Fossil Record of Eukaryotes
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Decay of velvet worms (Onychophora), and bias in the fossil record of lobopodians
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Ancestral morphology of Ecdysozoa constrained by an early Cambrian stem group ecdysozoan
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Phylogenetic congruence, conflict and consilience between molecular and morphological data
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Colonization of the ocean floor by jawless vertebrates across three mass extinctions
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Behaviour of cranes (family Gruidae) mirrors their phylogenetic relationships
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Total Evidence Phylogenetic Analysis Supports New Morphological Synapomorphies for Bovidae (Mammalia, Artiodactyla)
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Illustrating phylogenetic placement of fossils using RoguePlots: An example from ichneumonid parasitoid wasps (Hymenoptera, Ichneumonidae) and an extensive morphological matrix
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The effects of fossil taxa, hypothetical predicted ancestors, and a molecular scaffold on pseudoextinction analyses of extant placental orders
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PERSISTENCE OF EXTERNAL ANATOMY OF SMALL CRUSTACEANS IN A LONG TERM TAPHONOMIC EXPERIMENT
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EDIACARAN-STYLE DECAY EXPERIMENTS USING MOLLUSKS AND SEA ANEMONES
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Molecular Phylogenies Map to Biogeography Better than Morphological Ones
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The impact of tip age distribution on reconstructing trait evolution using phylogenetic comparative methods
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A Total Evidence Phylogenetic Analysis of Pinniped Phylogeny and the Possibility of Parallel Evolution Within a Monophyletic Framework
inferred← citeshttps://doi.org/10.3389/fevo.2026.1882629openalex-snapshot
A hundred years of dinosaur research in Mexico: skeletal completeness and phylogenetic information of the dinosaur fossil record in Mexico
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Evolutionary Models for the Diversification of Placental Mammals Across the KPg Boundary
inferred← citeshttps://doi.org/10.3389/fgene.2021.521693openalex-snapshot
The Making of Calibration Sausage Exemplified by Recalibrating the Transcriptomic Timetree of Jawed Vertebrates
inferred← citeshttps://doi.org/10.3390/d16010020openalex-snapshot
The Avian Acetabulum: Small Structure, but Rich with Illumination and Questions
inferred← citeshttps://doi.org/10.3390/sym13091644openalex-snapshot
A New Integrated Tool to Calculate and Map Bilateral Asymmetry on Three-Dimensional Digital Models
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Avian Diversification Patterns across the K-Pg Boundary: Influence of Calibrations, Datasets, and Model Misspecification1
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Supplemental Material for 'Total evidence phylogenetic analysis supports new morphological synapomorphies for Bovidae (Mammalia, Artiodactyla). (American Museum novitates, no. 3970)'
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Additional file 6 of Ancestral morphology of Ecdysozoa constrained by an early Cambrian stem group ecdysozoan
inferred← citeshttps://doi.org/10.70675/6738b1c8z4bb8z4e3eza5f3zc82624d6abf2openalex-snapshot
Impact of cell volume on the evolutionary strategies of eukaryotic cells
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Peer Review #1 of "Revision of the Late Triassic metoposaurid “Metoposaurus” bakeri (Amphibia: Temnospondyli) from Texas, USA and a phylogenetic analysis of the Metoposauridae (v0.1)"
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Revision of the Late Triassic metoposaurid “ Metoposaurus ” bakeri (Amphibia: Temnospondyli) from Texas, USA and a phylogenetic analysis of the Metoposauridae
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.