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Inferring complex phytogenies

https://doi.org/10.1038/383130a0
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/s0022-0981(96)02772-4openalex-snapshot
Molecular zoology: Advances, strategies and protocols
inferredcites →https://doi.org/10.1038/369363a0openalex-snapshot
Hobgoblin of phylogenetics?
inferredcites →https://doi.org/10.1038/379333a0openalex-snapshot
Phylogenetic position of the order Lagomorpha (rabbits, hares and allies)
inferredcites →https://doi.org/10.1093/aesa/90.6.863openalex-snapshot
Molecular Systematics, 2nd ed.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040433openalex-snapshot
A rate-independent technique for analysis of nucleic acid sequences: evolutionary parsimony.
inferredcites →https://doi.org/10.1093/sysbio/44.1.3openalex-snapshot
Approaches for Assessing Phylogenetic Accuracy
inferredcites →https://doi.org/10.1126/science.1840702openalex-snapshot
African Populations and the Evolution of Human Mitochondrial DNA
inferredcites →https://doi.org/10.1146/annurev.es.24.110193.001101openalex-snapshot
Congruence Between Molecular and Morphological Phylogenies
inferredcites →https://doi.org/10.2307/2399846openalex-snapshot
Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL
inferredcites →https://doi.org/10.2307/2404929openalex-snapshot
Molecular Zoology: Advances, Strategies, and Protocols.
inferredcites →https://doi.org/10.2307/2413537openalex-snapshot
Molecular Systematics.

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Tackling an intractable problem: Can greater taxon sampling help resolve relationships within the Stenopelmatoidea (Orthoptera: Ensifera)?
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A few logs suffice to build (almost) all trees (I)
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Back to the future: A synthesis of strepsirrhine systematics
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Maximum‐Likelihood Analysis Using TREE ‐ PUZZLE
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Maximum‐Likelihood Analysis Using TREE‐PUZZLE
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High‐Performance Phylogeny Reconstruction Under Maximum Parsimony
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Current Approaches to Phylogenomic Reconstruction
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Phylogeny Reconstruction
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Using and navigating the plant tree of life
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New mitogenomic lineages in Papio baboons and their phylogeographic implications
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Cranial anatomy and phylogenetic affinities of Bolosaurus major , with new information on the unique bolosaurid feeding apparatus and evolution of the impedance‐matching ear
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Wider sampling reveals a non‐sister relationship for geographically contiguous lineages of a marine mussel
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Comparative mitogenomics of marine angelfishes (F: Pomacanthidae)
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Museomic phylogenomics of Orthosiinae (Apocynaceae) integrating targeted sequencing and morphology
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Phylogenetics of Asphodelaceae (Asparagales): An Analysis of Plastid rbcL and trnL-F DNA Sequences
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Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences
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Phylogeny of the Lemuridae: Effects of Character and Taxon Sampling on Resolution of Species Relationships within Eulemur
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On the Other “Phylogenetic Systematics”
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Classification or Phylogenetic Estimates?
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Taxic Revisions
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Phylogenetic Relationships of the Liverworts (Hepaticae), a Basal Embryophyte Lineage, Inferred from Nucleotide Sequence Data of the Chloroplast GenerbcL
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The Position of Arthropods in the Animal Kingdom: A Search for a Reliable Outgroup for Internal Arthropod Phylogeny
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Duplicate Genes and the Root of Angiosperms, with an Example Using Phytochrome Sequences
inferred← citeshttps://doi.org/10.1006/mpev.1998.0518openalex-snapshot
Molecular Phylogenetics at the Felsenstein Zone: Approaching the Strepsiptera Problem Using 5.8S and 28S rDNA Sequences
inferred← citeshttps://doi.org/10.1006/mpev.1998.0549openalex-snapshot
PapilioPhylogeny Based on Mitochondrial Cytochrome Oxidase I and II Genes
inferred← citeshttps://doi.org/10.1006/mpev.1998.0562openalex-snapshot
A Molecular Phylogeny of the Pheasants and Partridges Suggests That These Lineages Are Not Monophyletic
inferred← citeshttps://doi.org/10.1006/mpev.1998.0570openalex-snapshot
A Comparison of Cytochromeband DNA Hybridization Data Bearing on the Phylogeny of Swallows (Aves: Hirundinidae)
inferred← citeshttps://doi.org/10.1006/mpev.1998.0577openalex-snapshot
Phylogenetic Relationships of the Enigmatic Angiosperm Family Podostemaceae Inferred from 18S rDNA andrbcLSequence Data
inferred← citeshttps://doi.org/10.1006/mpev.1999.0611openalex-snapshot
A Molecular Phylogeny of the New World Orioles (Icterus): The Importance of Dense Taxon Sampling
inferred← citeshttps://doi.org/10.1006/mpev.1999.0764openalex-snapshot
Rapidly Evolving Lineages Impede the Resolution of Phylogenetic Relationships among Clitellata (Annelida)
inferred← citeshttps://doi.org/10.1006/mpev.2000.0772openalex-snapshot
Factors Influencing Phylogenetic Inference: A Case Study Using the Mammalian Carnivores
inferred← citeshttps://doi.org/10.1006/mpev.2001.0945openalex-snapshot
Phylogeny of Rodentia (Mammalia) Inferred from the Nuclear-Encoded Gene IRBP
inferred← citeshttps://doi.org/10.1006/mpev.2001.0962openalex-snapshot
Retrieval of Four Adaptive Lineages in Duiker Antelope: Evidence from Mitochondrial DNA Sequences and Fluorescence in Situ Hybridization
inferred← citeshttps://doi.org/10.1006/mpev.2001.0974openalex-snapshot
Phylogeny and Evolution of African Shrews (Mammalia: Soricidae) Inferred from 16s rRNA Sequences
inferred← citeshttps://doi.org/10.1006/mpev.2001.1032openalex-snapshot
A Maximum-Likelihood Analysis of Eight Phylogenetic Markers in Gallwasps (Hymenoptera: Cynipidae): Implications for Insect Phylogenetic Studies
inferred← citeshttps://doi.org/10.1006/mpev.2001.1074openalex-snapshot
Phylogenetic Relationships of North American Garter Snakes (Thamnophis) Based on Four Mitochondrial Genes: How Much DNA Sequence Is Enough?
inferred← citeshttps://doi.org/10.1006/tpbi.2002.1593openalex-snapshot
Ancient Phylogenetic Relationships
inferred← citeshttps://doi.org/10.1007/1-4020-4408-9_4openalex-snapshot
Bayesian and maximum likelihood analyses of rotifer-acanthocephalan relationships
inferred← citeshttps://doi.org/10.1007/10913406_19openalex-snapshot
The Universal Tree of Life: From Simple to Complex or From Complex to Simple
inferred← citeshttps://doi.org/10.1007/3-540-48318-7_22openalex-snapshot
Estimating Large Distances in Phylogenetic Reconstruction
inferred← citeshttps://doi.org/10.1007/978-0-387-74021-8_2openalex-snapshot
The Diversity Of Eukaryotes And The Root Of The Eukaryotic Tree
inferred← citeshttps://doi.org/10.1007/978-1-0716-1826-4_7openalex-snapshot
Resurrecting Enzymes by Ancestral Sequence Reconstruction
inferred← citeshttps://doi.org/10.1007/978-1-4020-2330-9_21openalex-snapshot
Supertrees
inferred← citeshttps://doi.org/10.1007/978-1-4020-3547-0_4openalex-snapshot
Evolution Of Actinorhizal Host Plants And Frankia Endosymbionts
inferred← citeshttps://doi.org/10.1007/978-1-4020-6997-0_10openalex-snapshot
The Biogeographic Origins of Primates and Euprimates: East, West, North, or South of Eden?
inferred← citeshttps://doi.org/10.1007/978-1-4419-8873-7_2openalex-snapshot
Molecular Phylogeny and Dating of Early Primate Divergences
inferred← citeshttps://doi.org/10.1007/978-1-4471-5298-9_6openalex-snapshot
Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
inferred← citeshttps://doi.org/10.1007/978-1-4614-6732-8_7openalex-snapshot
The Evolutionary Origin of Animals and Fungi
inferred← citeshttps://doi.org/10.1007/978-1-4615-5419-6_1openalex-snapshot
Choosing an Approach and an Appropriate Gene for Phylogenetic Analysis
inferred← citeshttps://doi.org/10.1007/978-1-4615-5419-6_10openalex-snapshot
Phylogenetic Incongruence: Window into Genome History and Molecular Evolution
inferred← citeshttps://doi.org/10.1007/978-1-4615-5419-6_17openalex-snapshot
A Perspective on the Contribution of Plastid rbcL DNA Sequences to Angiosperm Phylogenetics
inferred← citeshttps://doi.org/10.1007/978-1-4615-5419-6_19openalex-snapshot
Phylogenetic Studies of Extant Pteridophytes
inferred← citeshttps://doi.org/10.1007/978-3-0348-8948-3_14openalex-snapshot
Pitfalls in phylogenetic analysis of large molecular data sets
inferred← citeshttps://doi.org/10.1007/978-3-0348-8948-3_15openalex-snapshot
The comparison of morphological and molecular data in phylogenetic systematics
inferred← citeshttps://doi.org/10.1007/978-3-540-74331-6_2openalex-snapshot
Large-Scale Phylogenetic Analysis of Emerging Infectious Diseases
inferred← citeshttps://doi.org/10.1007/978-3-642-27800-6_85-1openalex-snapshot
Molecular Evidence of Primate Origins and Evolution
inferred← citeshttps://doi.org/10.1007/978-3-642-39979-4_85openalex-snapshot
Molecular Evidence on Primate Origins and Evolution
inferred← citeshttps://doi.org/10.1007/978-4-431-65918-1_7openalex-snapshot
Molecular Phylogenetic Relationships Among Angiosperms: An Overview Based on rbcL and 18S rDNA Sequences
inferred← citeshttps://doi.org/10.1007/978-4-431-65930-3_6openalex-snapshot
Phylogenetic Analyses of Large Data Sets: Approaches Using the Angiosperms
inferred← citeshttps://doi.org/10.1007/978-94-010-0756-6_41openalex-snapshot
Early contributions of molecular phylogenetics to understanding the evolution of Rotifera
inferred← citeshttps://doi.org/10.1007/978-94-011-4221-2_3openalex-snapshot
Contributions of plant molecular systematics to studies of molecular evolution
inferred← citeshttps://doi.org/10.1007/978-94-011-4904-4_5openalex-snapshot
Arthropod and annelid relationships re-examined
inferred← citeshttps://doi.org/10.1007/bfb0045079openalex-snapshot
Parsimony is hard to beat!
inferred← citeshttps://doi.org/10.1007/pl00006266openalex-snapshot
Evolutionary Relationships Among the Eukaryotic Crown Taxa Taking into Account Site-to-Site Rate Variation in 18S rRNA
inferred← citeshttps://doi.org/10.1007/pl00006409openalex-snapshot
Identification of the First Fungal Annexin: Analysis of Annexin Gene Duplications and Implications for Eukaryotic Evolution
inferred← citeshttps://doi.org/10.1007/pl00006481openalex-snapshot
Multiple Substitutions Affect the Phylogenetic Utility of Cytochrome b and 12S rDNA Data: Examining a Rapid Radiation in Leporid (Lagomorpha) Evolution
inferred← citeshttps://doi.org/10.1007/pl00006538openalex-snapshot
Is There a Phylogenetic Signal in Prokaryote Proteins?
inferred← citeshttps://doi.org/10.1007/s00114-009-0555-4openalex-snapshot
Phylogeny of Collembola based on cuticular compounds:inherent usefulness and limitation of a character type
inferred← citeshttps://doi.org/10.1007/s00239-001-0019-8openalex-snapshot
Phylogenetic Analysis of 18S rRNA and the Mitochondrial Genomes of the Wombat, Vombatus ursinus, and the Spiny Anteater, Tachyglossus aculeatus: Increased Support for the Marsupionta Hypothesis
inferred← citeshttps://doi.org/10.1007/s00239-001-0057-2openalex-snapshot
Diversity, Distribution, and Ancient Taxonomic Relationships Within the TIR and Non-TIR NBS-LRR Resistance Gene Subfamilies
inferred← citeshttps://doi.org/10.1007/s00239-002-2394-1openalex-snapshot
When Being "Most Likely" Is Not Enough: Examining the Performance of Three Uses of the Parametric Bootstrap in Phylogenetics
inferred← citeshttps://doi.org/10.1007/s002390010072openalex-snapshot
Phylogenetic Position of the Subgenus Lordiphosa of the Genus Drosophila (Diptera: Drosophilidae) Inferred from Alcohol Dehydrogenase (Adh) Gene Sequences
inferred← citeshttps://doi.org/10.1007/s002390010118openalex-snapshot
Efficiency of the Neighbor-Joining Method in Reconstructing Deep and Shallow Evolutionary Relationships in Large Phylogenies
inferred← citeshttps://doi.org/10.1007/s002390010120openalex-snapshot
An Updated and Comprehensive rRNA Phylogeny of (Crown) Eukaryotes Based on Rate-Calibrated Evolutionary Distances
inferred← citeshttps://doi.org/10.1007/s00436-016-5101-7openalex-snapshot
Epidemiological and molecular data on heterophyid trematode metacercariae found in the muscle of grey mullets (Osteichthyes: Mugilidae) from Sardinia (western Mediterranean Sea)
inferred← citeshttps://doi.org/10.1007/s00606-008-0038-7openalex-snapshot
Molecular and morphological phylogeny of Menispermaceae (Ranunculales)
inferred← citeshttps://doi.org/10.1007/s00606-011-0544-xopenalex-snapshot
Impact of missing data, gene choice, and taxon sampling on phylogenetic reconstruction: the Caryophyllales (angiosperms)
inferred← citeshttps://doi.org/10.1007/s10528-006-9032-3openalex-snapshot
Mitochondrial DNA Restriction Map and Cytochrome c Oxidase Subunits I and II Sequence Divergence of Corn Stalk Borer Sesamia nonagrioides (Lepidoptera: Noctuidae)
inferred← citeshttps://doi.org/10.1007/s10750-005-4100-yopenalex-snapshot
Bayesian and Maximum Likelihood Analyses of Rotifer–Acanthocephalan Relationships
inferred← citeshttps://doi.org/10.1007/s10750-006-0369-8openalex-snapshot
Phylogenetic relationships of the Chinese sisorid catfishes: a nuclear intron versus mitochondrial gene approach
inferred← citeshttps://doi.org/10.1007/s10750-006-0478-4openalex-snapshot
Non-monophyly of fish in the Sinipercidae (Perciformes) as inferred from cytochrome b gene
inferred← citeshttps://doi.org/10.1007/s11538-010-9556-xopenalex-snapshot
Polyhedral Geometry of Phylogenetic Rogue Taxa
inferred← citeshttps://doi.org/10.1007/s13127-012-0115-1openalex-snapshot
Contrasting phylogenetic patterns of anther smuts (Pucciniomycotina: Microbotryum) reflect phylogenetic patterns of their caryophyllaceous hosts
inferred← citeshttps://doi.org/10.1016/b978-0-12-812553-3.00002-3openalex-snapshot
History of the Modern Concept of the Tree of Life
inferred← citeshttps://doi.org/10.1016/b978-0-12-812553-3.00003-5openalex-snapshot
Building the Tree of Life
inferred← citeshttps://doi.org/10.1016/b978-0-444-62710-0.00001-8openalex-snapshot
Reconciling Morphological and Molecular Approaches in Developing a Phylogeny for the Pectinidae (Mollusca: Bivalvia)
inferred← citeshttps://doi.org/10.1016/b978-012417540-2/50002-6openalex-snapshot
Molecules and Morphology in Studies of Fish Evolution
inferred← citeshttps://doi.org/10.1016/j.bbagen.2005.04.027openalex-snapshot
Genetic algorithm for large-scale maximum parsimony phylogenetic analysis of proteins
inferred← citeshttps://doi.org/10.1016/j.bulm.2004.07.007openalex-snapshot
Minimum evolution using ordinary least-squares is less robust than neighbor-joining
inferred← citeshttps://doi.org/10.1016/j.gene.2004.12.037openalex-snapshot
Transcriptional and phylogenetic analysis of five complete ambystomatid salamander mitochondrial genomes
inferred← citeshttps://doi.org/10.1016/j.gene.2006.07.002openalex-snapshot
A new test of phylogenetic model fitness addresses the issue of the basal angiosperm phylogeny
inferred← citeshttps://doi.org/10.1016/j.isci.2022.105594openalex-snapshot
Resolving tricky nodes in the tree of life through amino acid recoding
inferred← citeshttps://doi.org/10.1016/j.jbi.2005.04.001openalex-snapshot
Missing data and the design of phylogenetic analyses
inferred← citeshttps://doi.org/10.1016/j.meegid.2009.06.021openalex-snapshot
Analysis of the phylogenetic relationship of Anopheles species, subgenus Cellia (Diptera: Culicidae) and using it to define the relationship of morphologically similar species
inferred← citeshttps://doi.org/10.1016/j.meegid.2009.09.015openalex-snapshot
Phylogenetic perspectives on the epidemiology and origins of SARS and SARS-like coronaviruses
inferred← citeshttps://doi.org/10.1016/j.ode.2004.05.003openalex-snapshot
Squamate phylogeny, taxon sampling, and data congruence
inferred← citeshttps://doi.org/10.1016/j.protis.2011.04.005openalex-snapshot
Phylogenetic Analyses of a Combined Data Set Suggest that the Attheya Lineage is the Closest Living Relative of the Pennate Diatoms (Bacillariophyceae)
inferred← citeshttps://doi.org/10.1016/j.tig.2003.10.003openalex-snapshot
A decade of progress in plant molecular phylogenetics
inferred← citeshttps://doi.org/10.1016/j.ympev.2003.08.004openalex-snapshot
Efficiently resolving the basal clades of a phylogenetic tree using Bayesian and parsimony approaches: a case study using mitogenomic data from 100 higher teleost fishes
inferred← citeshttps://doi.org/10.1016/j.ympev.2004.04.011openalex-snapshot
Relative character-state space, amount of potential phylogenetic information, and heterogeneity of nucleotide and amino acid characters
inferred← citeshttps://doi.org/10.1016/j.ympev.2004.06.005openalex-snapshot
Molecular phylogeny and biogeography of Oriental voles: genus Eothenomys (Muridae, Mammalia)
inferred← citeshttps://doi.org/10.1016/j.ympev.2004.06.015openalex-snapshot
Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA
inferred← citeshttps://doi.org/10.1016/j.ympev.2005.08.006openalex-snapshot
Systematics of the cyclostome subfamilies of braconid parasitic wasps (Hymenoptera: Ichneumonoidea): A simultaneous molecular and morphological Bayesian approach
inferred← citeshttps://doi.org/10.1016/j.ympev.2005.09.019openalex-snapshot
Cytochrome b and Bayesian inference of whale phylogeny
inferred← citeshttps://doi.org/10.1016/j.ympev.2005.12.014openalex-snapshot
Bayesian mixed models and the phylogeny of pitvipers (Viperidae: Serpentes)
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.03.029openalex-snapshot
Attributes and congruence of three molecular data sets: Inferring phylogenies among Septoria-related species from woody perennial plants
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.11.001openalex-snapshot
Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.01.035openalex-snapshot
Large multi-gene phylogenetic trees of the grasses (Poaceae): Progress towards complete tribal and generic level sampling
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.05.046openalex-snapshot
The phylogeny of Cetartiodactyla: The importance of dense taxon sampling, missing data, and the remarkable promise of cytochrome b to provide reliable species-level phylogenies
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.07.022openalex-snapshot
Phylogenetic relationships of Middle American cichlids (Cichlidae, Heroini) based on combined evidence from nuclear genes, mtDNA, and morphology
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.12.015openalex-snapshot
Reconstructing the phylogenetic relationships of the earth’s most diverse clade of freshwater fishes—order Cypriniformes (Actinopterygii: Ostariophysi): A case study using multiple nuclear loci and the mitochondrial genome
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.10.017openalex-snapshot
Phylogenetic relationships of the western North American cyprinid genus Richardsonius, with an overview of phylogeographic structure
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.10.030openalex-snapshot
Phylogenetic relationships in the genus Cyprinella (Actinopterygii: Cyprinidae) based on mitochondrial and nuclear gene sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.01.006openalex-snapshot
Ancient common ancestry of Crimean-Congo hemorrhagic fever virus
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.03.041openalex-snapshot
Large multi-locus plastid phylogeny of the tribe Arundinarieae (Poaceae: Bambusoideae) reveals ten major lineages and low rate of molecular divergence
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.04.008openalex-snapshot
The world’s smallest vertebrate species of the genus Paedocypris: A new family of freshwater fishes and the sister group to the world’s most diverse clade of freshwater fishes (Teleostei: Cypriniformes)
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.07.007openalex-snapshot
Evolutionary relationships among marine cercozoans as inferred from combined SSU and LSU rDNA sequences and polyubiquitin insertions
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.09.004openalex-snapshot
Alignment of, and phylogenetic inference from, random sequences: The susceptibility of alternative alignment methods to creating artifactual resolution and support
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.12.002openalex-snapshot
Effect of genetic convergence on phylogenetic inference
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.01.015openalex-snapshot
Phylogeny of Bembidion and related ground beetles (Coleoptera: Carabidae: Trechinae: Bembidiini: Bembidiina)
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.03.006openalex-snapshot
Systematics of the grey mullets (Teleostei: Mugiliformes: Mugilidae): Molecular phylogenetic evidence challenges two centuries of morphology-based taxonomy
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.01.020openalex-snapshot
Quantification and relative severity of inflated branch-support values generated by alternative methods: An empirical example
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.07.021openalex-snapshot
Molecular phylogeny based on increased number of species and genes revealed more robust family-level systematics of the order Euryalida (Echinodermata: Ophiuroidea)
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.03.012openalex-snapshot
Dissecting signal and noise in diatom chloroplast protein encoding genes with phylogenetic information profiling
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.05.005openalex-snapshot
Resolving the phylogeny of a speciose spider group, the family Linyphiidae (Araneae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.05.011openalex-snapshot
Coalescence vs. concatenation: Sophisticated analyses vs. first principles applied to rooting the angiosperms
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.10.008openalex-snapshot
What are the roles of taxon sampling and model fit in tests of cyto-nuclear discordance using avian mitogenomic data?
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.11.002openalex-snapshot
The complex study of complexes: The first well-supported phylogeny of two species complexes within genus Caridina (Decapoda: Caridea: Atyidae) sheds light on evolution, biogeography, and habitat
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.05.009openalex-snapshot
Insights into the phylogeny of Hemiptera from increased mitogenomic taxon sampling
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107432openalex-snapshot
Target sequence capture of Barnadesioideae (Compositae) demonstrates the utility of low coverage loci in phylogenomic analyses
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108609openalex-snapshot
Phylogeny and diversification of the subfamily Acheilognathinae (Cypriniformes: Cyprinidae) from China based on a comprehensive molecular dataset
inferred← citeshttps://doi.org/10.1016/j.zool.2005.09.006openalex-snapshot
Magic bullets and golden rules: Data sampling in molecular phylogenetics
inferred← citeshttps://doi.org/10.1016/s0040-5809(02)00005-9openalex-snapshot
Statistics for phylogenetic trees
inferred← citeshttps://doi.org/10.1016/s0065-308x(06)63001-7openalex-snapshot
Phylogenetic Analyses of Parasites in the New Millennium
inferred← citeshttps://doi.org/10.1016/s0169-5347(00)01934-0openalex-snapshot
The evolution of base composition and phylogenetic inference
inferred← citeshttps://doi.org/10.1016/s0169-5347(96)30066-9openalex-snapshot
Building phylogenies: are the big easy?
inferred← citeshttps://doi.org/10.1016/s0169-5347(97)01270-6openalex-snapshot
What do we know about the performance of estimators for large phylogenies?
inferred← citeshttps://doi.org/10.1016/s0169-5347(97)83196-5openalex-snapshot
Are big trees indeed easy?
inferred← citeshttps://doi.org/10.1016/s0169-5347(97)83197-7openalex-snapshot
Are big trees indeed easy? Reply from A. Purvis and D.L.J. Quicke
inferred← citeshttps://doi.org/10.1016/s0169-5347(97)83198-9openalex-snapshot
Are big trees indeed easy? Reply from D.M. Hillis
inferred← citeshttps://doi.org/10.1016/s0304-3975(99)00028-6openalex-snapshot
A few logs suffice to build (almost) all trees: Part II
inferred← citeshttps://doi.org/10.1016/s0378-1119(00)00438-8openalex-snapshot
Long-branch attraction phenomenon and the impact of among-site rate variation on rodent phylogeny
inferred← citeshttps://doi.org/10.1016/s0723-2020(00)80045-4openalex-snapshot
The Relationship of Nitrate Reducing Bacteria on the Basis of narH Gene Sequences and Comparison of narH and 16S rDNA Based Phylogeny
inferred← citeshttps://doi.org/10.1016/s0748-3007(03)00067-7openalex-snapshot
From basepairs to birdsongs: phylogenetic data in the age of genomics
inferred← citeshttps://doi.org/10.1016/s1055-7903(02)00012-xopenalex-snapshot
Molecular phylogenetic analysis of Fringillidae, “New World nine-primaried oscines” (Aves: Passeriformes)
inferred← citeshttps://doi.org/10.1016/s1055-7903(02)00027-1openalex-snapshot
One hundred and seventeen clades of euagarics
inferred← citeshttps://doi.org/10.1016/s1055-7903(02)00202-6openalex-snapshot
Amino acid vs. nucleotide characters: challenging preconceived notions
inferred← citeshttps://doi.org/10.1016/s1055-7903(02)00203-8openalex-snapshot
Molecular phylogeny and historical biogeography of the Aphanius (Pisces, Cyprinodontiformes) species complex of central Anatolia, Turkey
inferred← citeshttps://doi.org/10.1016/s1055-7903(02)00213-0openalex-snapshot
Evolution of ecological traits and wing morphology in Hemileuca (Saturniidae) based on a two-gene phylogeny
inferred← citeshttps://doi.org/10.1016/s1055-7903(02)00366-4openalex-snapshot
The effects of increasing genetic distance on alignment of, and tree construction from, rDNA internal transcribed spacer sequences
inferred← citeshttps://doi.org/10.1016/s1055-7903(02)00397-4openalex-snapshot
Can the current molecular arsenal adequately track rapid divergence events within Simuliidae (Diptera)?
inferred← citeshttps://doi.org/10.1016/s1055-7903(03)00118-0openalex-snapshot
A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships
inferred← citeshttps://doi.org/10.1016/s1360-1385(00)01685-xopenalex-snapshot
Recent progress in reconstructing angiosperm phylogeny
inferred← citeshttps://doi.org/10.1016/s1360-1385(03)00165-1openalex-snapshot
The challenge of constructing large phylogenetic trees
inferred← citeshttps://doi.org/10.1016/s1369-5266(98)80017-4openalex-snapshot
Who's related to whom? Recent results from molecular systematic studies
inferred← citeshttps://doi.org/10.1016/s1874-5334(06)80006-7openalex-snapshot
Phylogenetic Network Construction Approaches
inferred← citeshttps://doi.org/10.1017/cbo9781139871822.002openalex-snapshot
Cheirogaleid diversity and evolution: big questions about small primates
inferred← citeshttps://doi.org/10.1017/s095375620200686xopenalex-snapshot
Are Microsporidia really related to Fungi?: a reappraisal based on additional gene sequences from basal fungi
inferred← citeshttps://doi.org/10.1017/s1089332600002448openalex-snapshot
Molecules, Morphology, Fossils and the Origination and Extinction Dynamics of Scleractinian Corals
inferred← citeshttps://doi.org/10.1017/s1477200007002290openalex-snapshot
Phylogeny of snakes (Serpentes): Combining morphological and molecular data in likelihood, Bayesian and parsimony analyses
inferred← citeshttps://doi.org/10.1017/s1477201904001427openalex-snapshot
Phylogeny of Drepanosauridae (Reptilia: Diapsida)
inferred← citeshttps://doi.org/10.1017/s1477201907002052openalex-snapshot
Styloichthys as the oldest coelacanth: Implications for early osteichthyan interrelationships
inferred← citeshttps://doi.org/10.1017/s1477201907002143openalex-snapshot
A new look at the phylogeny of coelurosauria (Dlnosauria: Theropoda)
inferred← citeshttps://doi.org/10.1017/s1477201908002605openalex-snapshot
Skull anatomy ofDakosaurus andiniensis(Thalattosuchia: Crocodylomorpha) and the phylogenetic position of Thalattosuchia
inferred← citeshttps://doi.org/10.1023/a:1006371803911openalex-snapshot
Contributions of plant molecular systematics to studies of molecular evolution
inferred← citeshttps://doi.org/10.1023/a:1016879610352openalex-snapshot
Conditionally Neutral Phylogenetic Markers of Major Taxa: A New Aspect of the Evolution of Macromolecules
inferred← citeshttps://doi.org/10.1023/a:1017502923286openalex-snapshot
Early contributions of molecular phylogenetics to understanding the evolution of Rotifera
inferred← citeshttps://doi.org/10.1038/18592openalex-snapshot
Taxon sampling revisited
inferred← citeshttps://doi.org/10.1038/35011054openalex-snapshot
The origin of red algae and the evolution of chloroplasts
inferred← citeshttps://doi.org/10.1038/35054555openalex-snapshot
Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants
inferred← citeshttps://doi.org/10.1038/46528openalex-snapshot
Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology
inferred← citeshttps://doi.org/10.1038/46536openalex-snapshot
The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes
inferred← citeshttps://doi.org/10.1038/nature02053openalex-snapshot
Genome-scale approaches to resolving incongruence in molecular phylogenies
inferred← citeshttps://doi.org/10.1038/ncomms3304openalex-snapshot
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
inferred← citeshttps://doi.org/10.1038/nrg1044openalex-snapshot
Phylogeny estimation: traditional and Bayesian approaches
inferred← citeshttps://doi.org/10.1038/s41576-023-00620-xopenalex-snapshot
Incongruence in the phylogenomics era
inferred← citeshttps://doi.org/10.1038/s41598-020-66287-0openalex-snapshot
Can Mitogenomes of the Northern Wheatear (Oenanthe oenanthe) Reconstruct Its Phylogeography and Reveal the Origin of Migrant Birds?
inferred← citeshttps://doi.org/10.1038/srep02545openalex-snapshot
Fossilization causes organisms to appear erroneously primitive by distorting evolutionary trees
inferred← citeshttps://doi.org/10.1046/j.1095-8312.2002.00071.xopenalex-snapshot
Falling apart and merging: diversification of slender salamanders (Plethodontidae: Batrachoseps) in the American West
inferred← citeshttps://doi.org/10.1046/j.1095-8312.2002.d01-6.xopenalex-snapshot
Falling apart and merging: diversification of slender salamanders (Plethodontidae: Batrachoseps
inferred← citeshttps://doi.org/10.1046/j.1095-8339.2003.t01-1-00158.xopenalex-snapshot
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II
inferred← citeshttps://doi.org/10.1046/j.1096-3642.2003.00084.xopenalex-snapshot
Systematics of the Hexacorallia (Cnidaria: Anthozoa)
inferred← citeshttps://doi.org/10.1046/j.1365-294x.1998.00413.xopenalex-snapshot
Mitochondrial and nuclear DNA sequence variability among populations of rainbow trout (Oncorhynchus mykiss)
inferred← citeshttps://doi.org/10.1046/j.1365-3113.1999.00088.xopenalex-snapshot
Phylogeny of carabid beetles as inferred from 18S ribosomal DNA (Coleoptera: Carabidae)
inferred← citeshttps://doi.org/10.1046/j.1365-3113.2000.00097.xopenalex-snapshot
Molecular sequence data resolves basal divergences within Simuliidae (Diptera)
inferred← citeshttps://doi.org/10.1046/j.1365-3113.2002.00171.xopenalex-snapshot
Phylogeny of the riodinid butterfly subtribe Theopeina (Lepidoptera: Riodinidae: Nymphidiini)
inferred← citeshttps://doi.org/10.1046/j.1463-6409.1999.00004.xopenalex-snapshot
Preservation of hymenopteran specimens for subsequent molecular and morphological study
inferred← citeshttps://doi.org/10.1046/j.1463-6409.2000.00045.xopenalex-snapshot
Phylogenetic position of the Tenrecs (Mammalia: Tenrecidae) of Madagascar based on analysis of the complete mitochondrial genome sequence of Echinops telfairi
inferred← citeshttps://doi.org/10.1046/j.1463-6409.2003.00134.xopenalex-snapshot
Morphological appraisal of Collembola phylogeny with special emphasis on Poduromorpha and a test of the aquatic origin hypothesis
inferred← citeshttps://doi.org/10.1046/j.1525-142x.2003.03042.xopenalex-snapshot
Conflicting phylogenetic signals at the base of the metazoan tree
inferred← citeshttps://doi.org/10.1046/j.1529-8817.2000.03653.xopenalex-snapshot
TRANSITION TO A LAND FLORA: A MOLECULAR PHYLOGENETIC PERSPECTIVE
inferred← citeshttps://doi.org/10.1071/9780643090149.part01openalex-snapshot
General Comparative Biology of the Monocots
inferred← citeshttps://doi.org/10.1071/am01009openalex-snapshot
Construction And Verification Of A Large Phylogeny Of Marsupials
inferred← citeshttps://doi.org/10.1071/is02016openalex-snapshot
Systematics and biogeography of the family Scorpionidae (Chelicerata : Scorpiones), with a discussion on phylogenetic methods
inferred← citeshttps://doi.org/10.1071/sb07006openalex-snapshot
Construction and annotation of large phylogenetic trees
inferred← citeshttps://doi.org/10.1073/pnas.092136399openalex-snapshot
The root of the angiosperms revisited
inferred← citeshttps://doi.org/10.1073/pnas.1107823108openalex-snapshot
Profile of David M. Hillis
inferred← citeshttps://doi.org/10.1073/pnas.162224399openalex-snapshot
The metapopulation genetic algorithm: An efficient solution for the problem of large phylogeny estimation
inferred← citeshttps://doi.org/10.1073/pnas.191248498openalex-snapshot
Incomplete taxon sampling is not a problem for phylogenetic inference
inferred← citeshttps://doi.org/10.1073/pnas.94.11.5722openalex-snapshot
Molecular evolution of angiosperm mitochondrial introns and exons
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