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Divergent DNA methylation patterns associated with gene expression in rice cultivars with contrasting drought and salinity stress response
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Methyl-CpG binding proteins: specialized transcriptional repressors or structural components of chromatin?
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Association between up-regulation of stress-responsive genes and hypomethylation of genomic DNA in tobacco plants
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Abiotic-stress induces demethylation and transcriptional activation of a gene encoding a glycerophosphodiesterase-like protein in tobacco plants
inferredcites →https://doi.org/10.1007/s10142-010-0187-yopenalex-snapshot
Modulation of transcription factor and metabolic pathway genes in response to water-deficit stress in rice
inferredcites →https://doi.org/10.1007/s11105-014-0753-xopenalex-snapshot
Genome-Scale Transcriptomic Insights into Molecular Aspects of Abiotic Stress Responses in Chickpea
inferredcites →https://doi.org/10.1007/s12298-013-0176-4openalex-snapshot
Epigenetic responses to drought stress in rice (Oryza sativa L.)
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Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR
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Validation of internal control genes for quantitative gene expression studies in chickpea (Cicer arietinum L.)
inferredcites →https://doi.org/10.1016/j.cell.2008.03.029openalex-snapshot
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
inferredcites →https://doi.org/10.1016/j.cell.2012.09.001openalex-snapshot
Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA
inferredcites →https://doi.org/10.1016/j.pbi.2008.12.006openalex-snapshot
Epigenetic regulation of stress responses in plants
inferredcites →https://doi.org/10.1016/j.pbi.2011.03.010openalex-snapshot
High-throughput approaches for plant epigenomic studies
inferredcites →https://doi.org/10.1016/j.pbi.2013.03.004openalex-snapshot
Rice epigenomics and epigenetics: challenges and opportunities
inferredcites →https://doi.org/10.1016/j.tig.2008.01.006openalex-snapshot
The methylome: approaches for global DNA methylation profiling
inferredcites →https://doi.org/10.1016/s0959-437x(99)80024-0openalex-snapshot
DNA methylation and chromatin modification
inferredcites →https://doi.org/10.1016/s0960-9822(02)00925-9openalex-snapshot
Role of the Arabidopsis DRM Methyltransferases in De Novo DNA Methylation and Gene Silencing
inferredcites →https://doi.org/10.1016/s0960-9822(03)00106-4openalex-snapshot
Role of CG and Non-CG Methylation in Immobilization of Transposons in Arabidopsis
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The Late Flowering Phenotype of fwa Mutants Is Caused by Gain-of-Function Epigenetic Alleles of a Homeodomain Gene
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Arabidopsis MBD proteins show different binding specificities and nuclear localization
inferredcites →https://doi.org/10.1038/30764openalex-snapshot
Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex
inferredcites →https://doi.org/10.1038/561openalex-snapshot
Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription
inferredcites →https://doi.org/10.1038/nature02651openalex-snapshot
Role of transposable elements in heterochromatin and epigenetic control
inferredcites →https://doi.org/10.1038/nature06745openalex-snapshot
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
inferredcites →https://doi.org/10.1038/nature08328openalex-snapshot
Selective epigenetic control of retrotransposition in Arabidopsis
inferredcites →https://doi.org/10.1038/nature09861openalex-snapshot
An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress
inferredcites →https://doi.org/10.1038/nbt.2462openalex-snapshot
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
inferredcites →https://doi.org/10.1038/ncomms5062openalex-snapshot
Overproduction of stomatal lineage cells in Arabidopsis mutants defective in active DNA demethylation
inferredcites →https://doi.org/10.1038/ng1138openalex-snapshot
Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis
inferredcites →https://doi.org/10.1038/ng1841openalex-snapshot
A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
inferredcites →https://doi.org/10.1038/ng1929openalex-snapshot
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
inferredcites →https://doi.org/10.1038/nrg2072openalex-snapshot
Transposable elements and the epigenetic regulation of the genome
inferredcites →https://doi.org/10.1038/nrg2719openalex-snapshot
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
inferredcites →https://doi.org/10.1038/sj.emboj.7601603openalex-snapshot
Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing
inferredcites →https://doi.org/10.1073/pnas.0900992106openalex-snapshot
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
inferredcites →https://doi.org/10.1073/pnas.0901942106openalex-snapshot
A metastable DWARF1 epigenetic mutant affecting plant stature in rice
inferredcites →https://doi.org/10.1073/pnas.1009695107openalex-snapshot
Local DNA hypomethylation activates genes in rice endosperm
inferredcites →https://doi.org/10.1073/pnas.1201043109openalex-snapshot
Trans Chromosomal Methylation in Arabidopsis hybrids
inferredcites →https://doi.org/10.1073/pnas.1209329109openalex-snapshot
Widespread dynamic DNA methylation in response to biotic stress
inferredcites →https://doi.org/10.1073/pnas.162371599openalex-snapshot
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
inferredcites →https://doi.org/10.1073/pnas.93.16.8334openalex-snapshot
Methylation of coding region alone inhibits gene expression in plant protoplasts.
inferredcites →https://doi.org/10.1074/jbc.m204050200openalex-snapshot
Periodic DNA Methylation in Maize Nucleosomes and Demethylation by Environmental Stress
inferredcites →https://doi.org/10.1093/bfgp/elu003openalex-snapshot
Accessing epigenetic variation in the plant methylome
inferredcites →https://doi.org/10.1093/bioinformatics/btr167openalex-snapshot
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
inferredcites →https://doi.org/10.1093/jxb/erq391openalex-snapshot
Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.)
inferredcites →https://doi.org/10.1093/jxb/eru333openalex-snapshot
Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing
inferredcites →https://doi.org/10.1093/mp/ssq014openalex-snapshot
Transgenerational Inheritance and Resetting of Stress-Induced Loss of Epigenetic Gene Silencing in Arabidopsis
inferredcites →https://doi.org/10.1093/mp/ssr039openalex-snapshot
Divergent DNA Methylation Patterns Associated with Abiotic Stress in Hevea brasiliensis
inferredcites →https://doi.org/10.1093/mp/sst123openalex-snapshot
Genome-Wide Analysis of DNA Methylation in Soybean
inferredcites →https://doi.org/10.1093/nar/gkr324openalex-snapshot
Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis
inferredcites →https://doi.org/10.1093/pcp/pcs044openalex-snapshot
Stress-Induced Chromatin Changes: A Critical View on Their Heritability
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Induced and Constitutive DNA Methylation in a Salinity-Tolerant Wheat Introgression Line
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siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis
inferredcites →https://doi.org/10.1101/gad.2.9.1136openalex-snapshot
Cytosine methylation prevents binding to DNA of a HeLa cell transcription factor required for optimal expression of the adenovirus major late promoter.
inferredcites →https://doi.org/10.1101/gad.947102openalex-snapshot
DNA methylation patterns and epigenetic memory
inferredcites →https://doi.org/10.1101/gr.091678.109openalex-snapshot
Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
inferredcites →https://doi.org/10.1101/gr.146985.112openalex-snapshot
CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize
inferredcites →https://doi.org/10.1104/pp.103.021212openalex-snapshot
Analysis of the Molecular Basis of Flowering Time Variation in Arabidopsis Accessions
inferredcites →https://doi.org/10.1104/pp.105.065961openalex-snapshot
Comparative Transcriptional Profiling of Two Contrasting Rice Genotypes under Salinity Stress during the Vegetative Growth Stage
inferredcites →https://doi.org/10.1104/pp.108.129791openalex-snapshot
Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses
inferredcites →https://doi.org/10.1105/tpc.13.4.889openalex-snapshot
Gene Expression Profiles during the Initial Phase of Salt Stress in Rice
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04580.xopenalex-snapshot
Environmentally induced phenotypes and DNA methylation: how to deal with unpredictable conditions until the next generation and after
inferredcites →https://doi.org/10.1111/j.1467-7652.2010.00560.xopenalex-snapshot
Comparative analysis of drought‐responsive transcriptome inIndicarice genotypes with contrasting drought tolerance
inferredcites →https://doi.org/10.1111/j.1742-4658.2009.07338.xopenalex-snapshot
Rice cytosine DNA methyltransferases – gene expression profiling during reproductive development and abiotic stress
inferredcites →https://doi.org/10.1111/nph.12137openalex-snapshot
Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression in Oryza sativa (rice)
inferredcites →https://doi.org/10.1111/pbi.12133openalex-snapshot
Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance
inferredcites →https://doi.org/10.1126/science.1059745openalex-snapshot
Requirement of CHROMOMETHYLASE3 for Maintenance of CpXpG Methylation
inferredcites →https://doi.org/10.1126/science.1171609openalex-snapshot
Extensive Demethylation of Repetitive Elements During Seed Development Underlies Gene Imprinting
inferredcites →https://doi.org/10.1126/science.1172417openalex-snapshot
Genome-Wide Demethylation of Arabidopsis Endosperm
inferredcites →https://doi.org/10.1126/science.1186366openalex-snapshot
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
inferredcites →https://doi.org/10.1126/science.1190485openalex-snapshot
Dnmt3a-Dependent Nonpromoter DNA Methylation Facilitates Transcription of Neurogenic Genes
inferredcites →https://doi.org/10.1146/annurev.arplant.59.032607.092744openalex-snapshot
Epigenetic Regulation of Transposable Elements in Plants
inferredcites →https://doi.org/10.1186/1471-2164-9-451openalex-snapshot
Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice
inferredcites →https://doi.org/10.1186/preaccept-1557064081219548openalex-snapshot
DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis
inferredcites →https://doi.org/10.1371/journal.pgen.1000733openalex-snapshot
Mu Transposon Insertion Sites and Meiotic Recombination Events Co-Localize with Epigenetic Marks for Open Chromatin across the Maize Genome
inferredcites →https://doi.org/10.1371/journal.pone.0009514openalex-snapshot
Transgenerational Adaptation of Arabidopsis to Stress Requires DNA Methylation and the Function of Dicer-Like Proteins
inferredcites →https://doi.org/10.1371/journal.pone.0030515openalex-snapshot
The Progeny of Arabidopsis thaliana Plants Exposed to Salt Exhibit Changes in DNA Methylation, Histone Modifications and Gene Expression
inferredcites →https://doi.org/10.1371/journal.pone.0030619openalex-snapshot
NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1371/journal.pone.0040203openalex-snapshot
Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes
inferredcites →https://doi.org/10.1371/journal.pone.0041143openalex-snapshot
Transgenerational Inheritance of Modified DNA Methylation Patterns and Enhanced Tolerance Induced by Heavy Metal Stress in Rice (Oryza sativa L.)
inferredcites →https://doi.org/10.1371/journal.pone.0049331openalex-snapshot
Bioinformatic Analysis of Epigenetic and MicroRNA Mediated Regulation of Drought Responsive Genes in Rice
inferredcites →https://doi.org/10.1371/journal.pone.0080253openalex-snapshot
Transgenerational Variations in DNA Methylation Induced by Drought Stress in Two Rice Varieties with Distinguished Difference to Drought Resistance
inferredcites →https://doi.org/10.5167/uzh-44099openalex-snapshot
Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins
inferredcites →https://doi.org/10.7554/elife.00354openalex-snapshot
Plants regenerated from tissue culture contain stable epigenome changes in rice
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Drought stress memory and subsequent drought stress tolerance in plants
inferred← citeshttps://doi.org/10.1016/b978-0-12-822849-4.00016-4openalex-snapshot
Epigenetics in horticultural crops: consequences and applications in abiotic stress tolerance
inferred← citeshttps://doi.org/10.1016/bs.abr.2017.11.007openalex-snapshot
Epigenetics, Epigenomics and Crop Improvement
inferred← citeshttps://doi.org/10.1016/bs.abr.2018.08.001openalex-snapshot
Epigenetic Diversity and Application to Breeding
inferred← citeshttps://doi.org/10.1016/bs.abr.2018.10.004openalex-snapshot
Aspects of Epigenetic Regulation in Cereals
inferred← citeshttps://doi.org/10.1016/bs.adgen.2018.12.001openalex-snapshot
Association mapping in plants in the post-GWAS genomics era
inferred← citeshttps://doi.org/10.1016/j.bbagrm.2026.195139openalex-snapshot
Advancing crop resilience to environmental stresses: Insights from epigenetic modification and CRISPR/dCas9-based editing
inferred← citeshttps://doi.org/10.1016/j.bcab.2020.101673openalex-snapshot
Understanding epigenetic modifications in response to abiotic stresses in plants
inferred← citeshttps://doi.org/10.1016/j.cpb.2025.100505openalex-snapshot
Integrative multi-omics analysis of rice grown continuously under P-starvation stress unravels Pup1-mediated regulatory complex for resilience to phosphorus deficiency
inferred← citeshttps://doi.org/10.1016/j.ecoenv.2025.118400openalex-snapshot
Integrated analysis of methylomic and transcriptomic profiles in fetal mouse hypothalamus in response to maternal gestational exposure to arsenic
inferred← citeshttps://doi.org/10.1016/j.envexpbot.2016.07.006openalex-snapshot
Transgenerational effects of temporal drought stress on spring barley morphology and functioning
inferred← citeshttps://doi.org/10.1016/j.envexpbot.2017.08.004openalex-snapshot
Analysis of DNA methylation patterns associated with drought stress response in faba bean ( Vicia faba L.) using methylation-sensitive amplification polymorphism (MSAP)
inferred← citeshttps://doi.org/10.1016/j.envexpbot.2018.12.015openalex-snapshot
Epigenetic analysis of WRKY transcription factor genes in salt stressed rice (Oryza sativa L.) plants
inferred← citeshttps://doi.org/10.1016/j.envexpbot.2022.105074openalex-snapshot
Population specific methylome remodeling in high and low elevation populations of Indian west Himalayan Arabidopsis thaliana in response to elevated CO2
inferred← citeshttps://doi.org/10.1016/j.envexpbot.2023.105599openalex-snapshot
Recent progress of molecular mechanisms of DNA methylation in plant response to abiotic stress
inferred← citeshttps://doi.org/10.1016/j.envexpbot.2024.105859openalex-snapshot
H2O2 priming: Biostimulation, drought tolerance and DNA methylation profile with intergenerational impact in tobacco plant
inferred← citeshttps://doi.org/10.1016/j.gene.2018.07.024openalex-snapshot
Genome-wide DNA methylation analysis of the regenerative and non-regenerative tissues in sika deer (Cervus nippon)
inferred← citeshttps://doi.org/10.1016/j.gene.2023.147900openalex-snapshot
A transposable element-derived siRNAs involve DNA hypermethylation at the promoter of OsGSTZ4 for cadmium tolerance in rice
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e30934openalex-snapshot
Exogenous application of 5-azacitidin, royal jelly and folic acid regulate plant redox state, expression level of DNA methyltransferases and alleviate adverse effects of salinity stress on Vicia faba L. plants
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2022.08.182openalex-snapshot
A review on CRISPR/Cas-based epigenetic regulation in plants
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2023.128769openalex-snapshot
Review: Structural-functional relationship of WRKY transcription factors: Unfolding the role of WRKY in plants
inferred← citeshttps://doi.org/10.1016/j.jplph.2022.153740openalex-snapshot
Epigenetic marks for mitigating abiotic stresses in plants
inferred← citeshttps://doi.org/10.1016/j.ocsci.2022.05.004openalex-snapshot
QTL mapping by whole genome re-sequencing and analysis of candidate genes for salt tolerance in linseed (Linum usitatissmum L.)
inferred← citeshttps://doi.org/10.1016/j.pbi.2017.02.004openalex-snapshot
Transposon-mediated epigenetic regulation contributes to phenotypic diversity and environmental adaptation in rice
inferred← citeshttps://doi.org/10.1016/j.pbi.2018.07.007openalex-snapshot
Activation of rice WRKY transcription factors: an army of stress fighting soldiers?
inferred← citeshttps://doi.org/10.1016/j.pbi.2024.102669openalex-snapshot
Unlocking crops’ genetic potential: Advances in genome and epigenome editing of regulatory regions
inferred← citeshttps://doi.org/10.1016/j.plantsci.2018.09.012openalex-snapshot
The contrasting response to drought and waterlogging is underpinned by divergent DNA methylation programs associated with transcript accumulation in sesame
inferred← citeshttps://doi.org/10.1016/j.plantsci.2023.111808openalex-snapshot
SlSAMS1 enhances salt tolerance through regulation DNA methylation of SlGI in tomato
inferred← citeshttps://doi.org/10.1016/j.plantsci.2024.112265openalex-snapshot
Unlocking plant resilience: Advanced epigenetic strategies against heavy metal and metalloid stress
inferred← citeshttps://doi.org/10.1016/j.plantsci.2026.113017openalex-snapshot
Polyploidization disrupts drought response and epigenetic patterns in the desert wild potato species Solanum kurtzianum
inferred← citeshttps://doi.org/10.1016/j.pld.2017.05.007openalex-snapshot
Intraspecific DNA methylation polymorphism in the non-edible oilseed plant castor bean
inferred← citeshttps://doi.org/10.1016/j.plgene.2017.05.011openalex-snapshot
Epigenetic regulation during salinity and drought stress in plants: Histone modifications and DNA methylation
inferred← citeshttps://doi.org/10.1016/j.sajb.2026.01.019openalex-snapshot
Habitat-specific DNA methylation dynamics during development of Calamagrostis angustifolia in contrasting wetlands
inferred← citeshttps://doi.org/10.1016/j.scienta.2018.04.044openalex-snapshot
Before-after analysis of genetic and epigenetic markers in garlic: A 13-year experiment
inferred← citeshttps://doi.org/10.1016/j.stress.2026.101302openalex-snapshot
Integrated epigenomic and transcriptomic analyses reveal regulatory and adaptive roles of Pup1 in phosphorus deficiency tolerance in rice
inferred← citeshttps://doi.org/10.1016/j.stress.2026.101363openalex-snapshot
Epigenetic stress memory for predictive and heritable crop epibreeding
inferred← citeshttps://doi.org/10.1016/j.tig.2017.08.007openalex-snapshot
Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response
inferred← citeshttps://doi.org/10.1016/j.tplants.2016.07.006openalex-snapshot
SMARTER De-Stressed Cereal Breeding
inferred← citeshttps://doi.org/10.1016/j.tplants.2017.04.009openalex-snapshot
Epigenetics for Plant Improvement: Current Knowledge and Modeling Avenues
inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.04.005openalex-snapshot
Bisulphite sequencing reveals dynamic DNA methylation under desiccation and salinity stresses in rice cultivars
inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.08.031openalex-snapshot
Genome-wide identification and expression profiling of cytosine-5 DNA methyltransferases during drought and heat stress in wheat (Triticum aestivum)
inferred← citeshttps://doi.org/10.1017/s1479262120000234openalex-snapshot
Assessment of DNA methylation pattern under drought stress using methylation-sensitive randomly amplified polymorphism analysis in rice
inferred← citeshttps://doi.org/10.1021/acsagscitech.5c00598openalex-snapshot
Evolutionary Genomics of Adaptive Traits in Wheat Landraces: Role of Chromatin Remodeling
inferred← citeshttps://doi.org/10.1021/acsomega.1c04917openalex-snapshot
Structural Insights into Methylated DNA Recognition by the Methyl-CpG Binding Domain of MBD6 from Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1038/nrg.2017.45openalex-snapshot
Exploiting induced and natural epigenetic variation for crop improvement
inferred← citeshttps://doi.org/10.1038/s41598-017-02860-4openalex-snapshot
Gene-body CG methylation and divergent expression of duplicate genes in rice
inferred← citeshttps://doi.org/10.1038/s41598-018-27979-wopenalex-snapshot
Genome-wide bisulphite-sequencing reveals organ-specific methylation patterns in chickpea
inferred← citeshttps://doi.org/10.1038/s41598-019-42731-8openalex-snapshot
Abiotic and biotic stresses induce a core transcriptome response in rice
inferred← citeshttps://doi.org/10.1038/s41598-019-44757-4openalex-snapshot
Gene Expression analysis associated with salt stress in a reciprocally crossed rice population
inferred← citeshttps://doi.org/10.1038/s42003-020-1059-1openalex-snapshot
DNA methylation reprogramming during seed development and its functional relevance in seed size/weight determination in chickpea
inferred← citeshttps://doi.org/10.1038/srep32621openalex-snapshot
Comprehensive analysis of SET domain gene family in foxtail millet identifies the putative role of SiSET14 in abiotic stress tolerance
inferred← citeshttps://doi.org/10.1042/bst20210908openalex-snapshot
Decoding the sorghum methylome: understanding epigenetic contributions to agronomic traits
inferred← citeshttps://doi.org/10.1057/s41599-020-00693-7openalex-snapshot
Transdisciplinary participatory-action-research from questions to actionable knowledge for sustainable viticulture development
inferred← citeshttps://doi.org/10.1073/pnas.1704211114openalex-snapshot
Ploidy-dependent changes in the epigenome of symbiotic cells correlate with specific patterns of gene expression
inferred← citeshttps://doi.org/10.1073/pnas.2104445118openalex-snapshot
Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting
inferred← citeshttps://doi.org/10.1079/9781800623033.0004openalex-snapshot
Chromatin Architecture: Role of Epigenetic Modifications and Nucleosome Occupancy in Modulating Plant Responses to Salt Stress
inferred← citeshttps://doi.org/10.1079/9781800626102.0004openalex-snapshot
Epigenetics for Developing Abiotic Stress-Tolerant Plants: Updated Methods and Current Achievements
inferred← citeshttps://doi.org/10.1080/09553002.2024.2391813openalex-snapshot
Biological impact of Chornobyl radiation: a review of recent progress
inferred← citeshttps://doi.org/10.1080/10409238.2024.2320659openalex-snapshot
Epigenome editing for targeted DNA (de)methylation: a new perspective in modulating gene expression
inferred← citeshttps://doi.org/10.1093/aob/mcag009openalex-snapshot
Genome-wide analysis of DNA methylation in response to light and salt stress in a halophyte with single cell C4 pathway
inferred← citeshttps://doi.org/10.1093/dnares/dsae013openalex-snapshot
Uncovering DNA methylation landscapes to decipher evolutionary footprints of phenotypic diversity in chickpea
inferred← citeshttps://doi.org/10.1093/dnares/dsy008openalex-snapshot
Unravelling the epigenomic interactions between parental inbreds resulting in an altered hybrid methylome in pigeonpea
inferred← citeshttps://doi.org/10.1093/gbe/evaa180openalex-snapshot
Impact of Transposable Elements on Methylation and Gene Expression across Natural Accessions of Brachypodium distachyon
inferred← citeshttps://doi.org/10.1093/hr/uhag109openalex-snapshot
Epigenetic orchestration of sugar signaling in plant development and stress adaptation
inferred← citeshttps://doi.org/10.1093/jxb/eraa188openalex-snapshot
Epigenetics: possible applications in climate-smart crop breeding
inferred← citeshttps://doi.org/10.1093/jxb/erag274openalex-snapshot
Functional and regulatory complexity: challenges and prospects for understanding rice WRKY transcription factors
inferred← citeshttps://doi.org/10.1093/jxb/erx409openalex-snapshot
Changes in the epigenome and transcriptome of the poplar shoot apical meristem in response to water availability affect preferentially hormone pathways
inferred← citeshttps://doi.org/10.1093/jxb/ery271openalex-snapshot
Winter-dormant shoot apical meristem in poplar trees shows environmental epigenetic memory
inferred← citeshttps://doi.org/10.1093/jxb/erz457openalex-snapshot
Chromatin dynamics during interphase and cell division: similarities and differences between model and crop plants
inferred← citeshttps://doi.org/10.1093/nsr/nww042openalex-snapshot
Epigenetic regulation and epigenomic landscape in rice
inferred← citeshttps://doi.org/10.1093/toxsci/kfw053openalex-snapshot
First Morphological and Molecular Evidence of the Negative Impact of Diatom-Derived Hydroxyacids on the Sea UrchinParacentrotus lividus
inferred← citeshttps://doi.org/10.1101/2020.04.16.045328openalex-snapshot
Hypomethylated poplars show higher tolerance to water deficit and highlight a dual role for DNA methylation in shoot meristem: regulation of stress response and genome integrity
inferred← citeshttps://doi.org/10.1101/2023.09.26.559529openalex-snapshot
Species-specific epigenetic responses to drought stress of two sympatric oak species reflect their ecological preferences
inferred← citeshttps://doi.org/10.1101/2024.09.27.615456openalex-snapshot
Synchronized Chromatin Organization Serves as Potent Biomarker in Anaesthesia-based Plant Consciousness
inferred← citeshttps://doi.org/10.1101/558064openalex-snapshot
Role of DNA methylation dynamics in desiccation and salinity stress responses in rice cultivars
inferred← citeshttps://doi.org/10.1111/gcb.15249openalex-snapshot
The methylome is altered for plants in a high CO2 world: Insights into the response of a wild plant population to multigenerational exposure to elevated atmospheric [CO2]
inferred← citeshttps://doi.org/10.1111/mec.14727openalex-snapshot
Synthesizing the role of epigenetics in the response and adaptation of species to climate change in freshwater ecosystems
inferred← citeshttps://doi.org/10.1111/nph.17555openalex-snapshot
RNAi suppression of DNA methylation affects the drought stress response and genome integrity in transgenic poplar
inferred← citeshttps://doi.org/10.1111/pbi.70243openalex-snapshot
Epigenetic regulation modulates seasonal temperature‐dependent growth of soybean in southern China
inferred← citeshttps://doi.org/10.1111/pce.13403openalex-snapshot
Natural variation in cytokinin maintenance improves salt tolerance in apple rootstocks
inferred← citeshttps://doi.org/10.1111/pce.15325openalex-snapshot
Short‐Term High Light Stress Analysis Through Differential Methylation Identifies Root Architecture and Cell Size Responses
inferred← citeshttps://doi.org/10.1111/ppl.13149openalex-snapshot
Long‐term somatic memory of salinity unveiled from physiological, biochemical and epigenetic responses in two contrasting rice genotypes
inferred← citeshttps://doi.org/10.1111/ppl.13162openalex-snapshot
Hypomethylation of the aquatic invasive plant,Ludwigia grandiflorasubsp.hexapetalamimics the adaptive transition into the terrestrial morphotype
inferred← citeshttps://doi.org/10.1111/ppl.13272openalex-snapshot
Coping with inclement weather conditions due to high temperature and water deficit in rice: An insight from genetic and biochemical perspectives
inferred← citeshttps://doi.org/10.1111/ppl.13284openalex-snapshot
Draft genome and transcriptome analyses of halophyte rice Oryza coarctata provide resources for salinity and submergence stress response factors
inferred← citeshttps://doi.org/10.1111/ppl.13421openalex-snapshot
Enhancers as potential targets for engineering salinity stress tolerance in crop plants
inferred← citeshttps://doi.org/10.1111/ppl.70058openalex-snapshot
Impact of water stress to plant epigenetic mechanisms in stress and adaptation
inferred← citeshttps://doi.org/10.1111/ppl.70520openalex-snapshot
Exploring Multi‐Omics Tools and Their Advancement to Study Drought Stress Responses
inferred← citeshttps://doi.org/10.1111/ppl.70958openalex-snapshot
DNA Methylation of MYB Sites of Chickpea CabHLH92 During Salt Stress and Fusarium Wilt Under Influence of Trichoderma asperellum T42
inferred← citeshttps://doi.org/10.1111/ppl.71113openalex-snapshot
Persistent Epigenetic Reprogramming Is Associated With Contrasting Drought‐Response Strategies in Citrus Scion–Rootstock Systems
inferred← citeshttps://doi.org/10.1111/tpj.70436openalex-snapshot
Genomic context‐dependent roles of 5‐hydroxymethylcytosine in regulating gene expression during rice drought response
inferred← citeshttps://doi.org/10.1155/2022/1092894openalex-snapshot
Role of Epigenetics in Modulating Phenotypic Plasticity against Abiotic Stresses in Plants
inferred← citeshttps://doi.org/10.1186/s12864-018-4484-5openalex-snapshot
Genome-wide DNA Methylation analysis in response to salinity in the model plant caliph medic (Medicago truncatula)
inferred← citeshttps://doi.org/10.1186/s12864-019-5688-zopenalex-snapshot
Cadmium-induced genome-wide DNA methylation changes in growth and oxidative metabolism in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1186/s12864-019-6101-7openalex-snapshot
Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots
inferred← citeshttps://doi.org/10.1186/s12870-017-1028-0openalex-snapshot
A relative quantitative Methylation-Sensitive Amplified Polymorphism (MSAP) method for the analysis of abiotic stress
inferred← citeshttps://doi.org/10.1186/s12870-020-02814-5openalex-snapshot
Integrated analysis of DNA methylome and transcriptome reveals epigenetic regulation of CAM photosynthesis in pineapple
inferred← citeshttps://doi.org/10.1186/s12870-024-05573-9openalex-snapshot
Unveiling the role of epigenetics in leaf senescence: a comparative study to identify different epigenetic regulations of senescence types in barley leaves
inferred← citeshttps://doi.org/10.1186/s12870-024-05641-0openalex-snapshot
Genome-wide DNA methylation and their transgenerational pattern differ in Arabidopsis thaliana populations originated along the elevation of West Himalaya
inferred← citeshttps://doi.org/10.1186/s12870-026-08405-0openalex-snapshot
Integrated epigenomic and transcriptional profiling reveals genotype-specific adaptive reprogramming to drought stress in Brassica napus
inferred← citeshttps://doi.org/10.1186/s40659-023-00424-7openalex-snapshot
The pattern of alternative splicing and DNA methylation alteration and their interaction in linseed (Linum usitatissimum L.) response to repeated drought stresses
inferred← citeshttps://doi.org/10.1186/s43170-023-00173-3openalex-snapshot
Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties
inferred← citeshttps://doi.org/10.1371/journal.pone.0190299openalex-snapshot
Genome-wide analysis of day/night DNA methylation differences in Populus nigra
inferred← citeshttps://doi.org/10.1371/journal.pone.0251675openalex-snapshot
Salt stress and salt shock differently affect DNA methylation in salt-responsive genes in sugar beet and its wild, halophytic ancestor
inferred← citeshttps://doi.org/10.14232/phd.4084openalex-snapshot
Ploidy-dependent changes in the epigenome of symbiotic cells correlate with specific patterns of gene expression
inferred← citeshttps://doi.org/10.17221/90/2020-cjgpbopenalex-snapshot
Comparison of DNA methylation landscape between Czech and Armenian vineyards show their unique character and increased diversity
inferred← citeshttps://doi.org/10.20944/preprints201806.0426.v1openalex-snapshot
When water runs dry and temperature heats up: Understanding the mechanisms in rice tolerance to drought and high temperature stress conditions
inferred← citeshttps://doi.org/10.20944/preprints202107.0135.v1openalex-snapshot
Epigenetics: A Key to Comprehending Biotic and Abiotic Stress Tolerance in Family Poaceae
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2517802/v1openalex-snapshot
RNA-Seq, co-expression network and eQTL analysis identify key genes for chlorophyll and carbon metabolism in rice
inferred← citeshttps://doi.org/10.21203/rs.3.rs-9937322/v1openalex-snapshot
CRISPR-Cas9–Mediated Genome Editing in Avocado: Advances in Editing Efficiency and Regeneration
inferred← citeshttps://doi.org/10.21475/ajcs.19.13.10.p1830openalex-snapshot
Salt stress in popcorn genotypes trigger changes of antioxidant enzymes
inferred← citeshttps://doi.org/10.22215/etd/2017-12103openalex-snapshot
The Epigenetics of a Cereal Killer: The Role of DNA Methylation in Pathogenicity and Development of Fusarium graminearum
inferred← citeshttps://doi.org/10.30954/2319-5169.1.2021.1openalex-snapshot
Bisulphite sequence data reveals host-microbiota interaction in germfree and conventional mice
inferred← citeshttps://doi.org/10.3389/fgene.2019.00055openalex-snapshot
Physiological and Transcriptome Analyses Reveal Short-Term Responses and Formation of Memory Under Drought Stress in Rice
inferred← citeshttps://doi.org/10.3389/fgene.2022.900253openalex-snapshot
Epigenomics as Potential Tools for Enhancing Magnitude of Breeding Approaches for Developing Climate Resilient Chickpea
inferred← citeshttps://doi.org/10.3389/fpls.2016.01627openalex-snapshot
An S-adenosyl Methionine Synthetase (SAMS) Gene from Andropogon virginicus L. Confers Aluminum Stress Tolerance and Facilitates Epigenetic Gene Regulation in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.3389/fpls.2016.01675openalex-snapshot
Genome-Wide Differences in DNA Methylation Changes in Two Contrasting Rice Genotypes in Response to Drought Conditions
inferred← citeshttps://doi.org/10.3389/fpls.2017.00011openalex-snapshot
Differentially Methylated Epiloci Generated from Numerous Genotypes of Contrasting Tolerances Are Associated with Osmotic-Tolerance in Rice Seedlings
inferred← citeshttps://doi.org/10.3389/fpls.2017.00082openalex-snapshot
Plant Stress Responses and Phenotypic Plasticity in the Epigenomics Era: Perspectives on the Grapevine Scenario, a Model for Perennial Crop Plants
inferred← citeshttps://doi.org/10.3389/fpls.2018.00903openalex-snapshot
miR394 Acts as a Negative Regulator of Arabidopsis Resistance to B. cinerea Infection by Targeting LCR
inferred← citeshttps://doi.org/10.3389/fpls.2018.01249openalex-snapshot
Using Biotechnology-Led Approaches to Uplift Cereal and Food Legume Yields in Dryland Environments
inferred← citeshttps://doi.org/10.3389/fpls.2020.602625openalex-snapshot
Epigenetic Control of Plant Response to Heavy Metal Stress: A New View on Aluminum Tolerance
inferred← citeshttps://doi.org/10.3389/fpls.2021.691790openalex-snapshot
Epigenomic Regulators Elongator Complex Subunit 2 and Methyltransferase 1 Differentially Condition the Spaceflight Response in Arabidopsis
inferred← citeshttps://doi.org/10.3389/fpls.2022.856527openalex-snapshot
Antioxidant Regulation and DNA Methylation Dynamics During Mikania micrantha Seed Germination Under Cold Stress
inferred← citeshttps://doi.org/10.3389/fpls.2022.871890openalex-snapshot
Pup1 QTL Regulates Gene Expression Through Epigenetic Modification of DNA Under Phosphate Starvation Stress in Rice
inferred← citeshttps://doi.org/10.3389/fpls.2022.933740openalex-snapshot
The interplay of DNA methyltransferases and demethylases with tuberization genes in potato (Solanum tuberosum L.) genotypes under high temperature
inferred← citeshttps://doi.org/10.3389/fpls.2022.996514openalex-snapshot
Physiological and molecular implications of multiple abiotic stresses on yield and quality of rice
inferred← citeshttps://doi.org/10.3389/fpls.2023.1101665openalex-snapshot
Genome-wide identification of the class III peroxidase gene family of sugarcane and its expression profiles under stresses
inferred← citeshttps://doi.org/10.3389/fpls.2023.1258487openalex-snapshot
Epigenetic control of plant senescence and cell death and its application in crop improvement
inferred← citeshttps://doi.org/10.3389/fpls.2025.1707950openalex-snapshot
Genome-wide DNA methylation dynamics at “heading” stage of panicle and flag leaf in contrasting rice cultivars under field drought conditions
inferred← citeshttps://doi.org/10.3389/fpls.2026.1874689openalex-snapshot
Habitat-specific alternative splicing shifts and the 5mC methylation landscape of differentially spliced genes in Riccia fluitans
inferred← citeshttps://doi.org/10.3389/fpls.2026.1894569openalex-snapshot
DNA methylation variations induced by salt and alkali stresses and their differential responses in Tamarix chinensis L
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