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Comparison of intraspecific, interspecific and intergeneric chloroplast diversity in Cycads

https://doi.org/10.1038/srep31473
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The Complete Chloroplast Genome of 17 Individuals of Pest Species Jacobaea vulgaris: SNPs, Microsatellites and Barcoding Markers for Population and Phylogenetic Studies
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Comparative Chloroplast Genomes of Pinaceae: Insights into the Mechanism of Diversified Genomic Organizations
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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VISTA: computational tools for comparative genomics
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A character-based approach in the Mexican cycads supports diverse multigene combinations for DNA barcoding
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Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04638.xopenalex-snapshot
When North and South don’t mix: genetic connectivity of a recently endangered oceanic cycad, Cycas micronesica, in Guam using EST-microsatellites
inferredcites →https://doi.org/10.1111/j.1467-7652.2010.00558.xopenalex-snapshot
Chloroplast genome sequences from total DNA for plant identification
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Isolation and characterization of microsatellite markers for Cycas debaoensis Y. C. Zhong et C. J. Chen (Cycadaceae)
inferredcites →https://doi.org/10.1111/mec.13549openalex-snapshot
From barcodes to genomes: extending the concept of DNA barcoding
inferredcites →https://doi.org/10.1126/science.1209926openalex-snapshot
Recent Synchronous Radiation of a Living Fossil
inferredcites →https://doi.org/10.1126/science.164.3877.295openalex-snapshot
Cycads: Fossil Evidence of Late Paleozoic Origin
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An Assessment of Red List Data for the Cycadales
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PATRISTIC: a program for calculating patristic distances and graphically comparing the components of genetic change
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Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids
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A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects.
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Microarray and cDNA sequence analysis of transcription during nerve-dependent limb regeneration
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inferredcites →https://doi.org/10.1371/journal.pone.0001154openalex-snapshot
DNA Barcoding in the Cycadales: Testing the Potential of Proposed Barcoding Markers for Species Identification of Cycads
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inferredcites →https://doi.org/10.1371/journal.pone.0035071openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pone.0036869openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pone.0069189openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pone.0117971openalex-snapshot
Nuclear Ribosomal ITS Functional Paralogs Resolve the Phylogenetic Relationships of a Late-Miocene Radiation Cycad Cycas (Cycadaceae)
inferredcites →https://doi.org/10.1663/0006-8101(2004)070[0093:ndocaa]2.0.co;2openalex-snapshot
New Discoveries of Cycads and Advancement of Conservation of Cycads in China
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The World List of Cycads
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inferredcites →https://doi.org/10.3109/19401736.2010.539215openalex-snapshot
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inferredcites →https://doi.org/10.3109/19401736.2014.900666openalex-snapshot
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inferredcites →https://doi.org/10.3109/19401736.2015.1110800openalex-snapshot
Complete chloroplast genome sequence of Castanopsis concinna (Fagaceae), a threatened species from Hong Kong and South-Eastern China
inferredcites →https://doi.org/10.3732/ajb.1000504openalex-snapshot
Microsatellite primers in the native perennial cycad Cycas taitungensis (Cycadaceae)
inferredcites →https://doi.org/10.3732/ajb.1100335openalex-snapshot
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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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The dynamic history of gymnosperm plastomes: Insights from structural characterization, comparative analysis, phylogenomics, and time divergence
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Structural characterization and comparative analysis of the chloroplast genome of Ginkgo biloba and other gymnosperms
inferred← citeshttps://doi.org/10.1007/s13237-019-00302-2openalex-snapshot
Karyotype evolution in cycads
inferred← citeshttps://doi.org/10.1016/bs.abr.2017.11.013openalex-snapshot
Structural Diversity Among Plastid Genomes of Land Plants
inferred← citeshttps://doi.org/10.1016/bs.abr.2017.11.018openalex-snapshot
Evolution of Gymnosperm Plastid Genomes
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The complete plastome sequence of Rubus takesimensis endemic to Ulleung Island, Korea: Insights into molecular evolution of anagenetically derived species in Rubus (Rosaceae)
inferred← citeshttps://doi.org/10.1016/j.pld.2021.11.001openalex-snapshot
Molecular phylogenetic analyses based on the complete plastid genomes and nuclear sequences reveal Daphne (Thymelaeaceae) to be non-monophyletic as current circumscription
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Phylogeny of the gymnosperm genus Cycas L. (Cycadaceae) as inferred from plastid and nuclear loci based on a large-scale sampling: Evolutionary relationships and taxonomical implications
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The extraordinary variation of the organellar genomes of the Aneura pinguis revealed advanced cryptic speciation of the early land plants
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Exploring evolution and diversity of Chinese Dipterocarpaceae using next-generation sequencing
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Comparative analysis of chloroplast genomes of kenaf cytoplasmic male sterile line and its maintainer line
inferred← citeshttps://doi.org/10.1080/23802359.2017.1398618openalex-snapshot
The complete mitochondrial genome of the Agrocybe aegerita, an edible mushroom
inferred← citeshttps://doi.org/10.1080/23802359.2017.1422405openalex-snapshot
The complete mitochondrial genome of the Basidiomycete fungus Pleurotus cornucopiae (Paulet) Rolland
inferred← citeshttps://doi.org/10.1080/23802359.2018.1508387openalex-snapshot
Characterization of the complete chloroplast genome of endangered Cycads Zamia fischeri Miq. ex Lem
inferred← citeshttps://doi.org/10.1080/23802359.2021.1914220openalex-snapshot
Characterization of the complete chloroplast genome of mangrove Bruguiera gymnorrhiza (L.) Lam. ex Savigny
inferred← citeshttps://doi.org/10.1080/23802359.2021.1923421openalex-snapshot
Characterization of the complete chloroplast genome of mangrove Rhizophora apiculata Blume (Rhizophoraceae)
inferred← citeshttps://doi.org/10.1086/725164openalex-snapshot
Phylogeography of Icelandic Agrostis (Poaceae) Reveals a New Geothermal Lineage
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Limited effects of xylem anatomy on embolism resistance in cycad leaves
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Coordination of intertracheid pit traits and climate effects among cycads
inferred← citeshttps://doi.org/10.1155/2019/5921725openalex-snapshot
Identification and Phylogenetic Analysis of the Complete Chloroplast Genomes of Three Ephedra Herbs Containing Ephedrine
inferred← citeshttps://doi.org/10.1186/s12864-025-12504-xopenalex-snapshot
Analysis of the variation and genetic stability of chloroplast genome of Pinus taeda
inferred← citeshttps://doi.org/10.1186/s12870-020-02435-yopenalex-snapshot
Molecular delimitation of European leafy liverworts of the genus Calypogeia based on plastid super-barcodes
inferred← citeshttps://doi.org/10.1186/s12870-022-03491-2openalex-snapshot
Towards the plastome evolution and phylogeny of Cycas L. (Cycadaceae): molecular-morphology discordance and gene tree space analysis
inferred← citeshttps://doi.org/10.1186/s41065-024-00321-3openalex-snapshot
Comparative chloroplast-specific SNP and nSCoT markers analysis and population structure study in kiwifruit plants
inferred← citeshttps://doi.org/10.1371/journal.pone.0250968openalex-snapshot
Screening and verification of extranuclear genetic markers in green tide algae from the Yellow Sea
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3155001/v1openalex-snapshot
The control of hormogonia induction/suppression by the alteration of scmucilage signaling molecules in Cycas plant in an endosymbiotic cyanobacterium
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Perspectives on Endosymbiosis in Coralloid Roots: Association of Cycads and Cyanobacteria
inferred← citeshttps://doi.org/10.3390/genes8090227openalex-snapshot
The Chloroplast Genome Sequence of Scutellaria baicalensis Provides Insight into Intraspecific and Interspecific Chloroplast Genome Diversity in Scutellaria
inferred← citeshttps://doi.org/10.3390/microorganisms11092364openalex-snapshot
Core Endophytic Bacteria and Their Roles in the Coralloid Roots of Cultivated Cycas revoluta (Cycadaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.12386273openalex-snapshot
Additional file 1 of Molecular delimitation of European leafy liverworts of the genus Calypogeia based on plastid super-barcodes
inferred← citeshttps://doi.org/10.6084/m9.figshare.12386282openalex-snapshot
Additional file 2 of Molecular delimitation of European leafy liverworts of the genus Calypogeia based on plastid super-barcodes
inferred← citeshttps://doi.org/10.6084/m9.figshare.12386288openalex-snapshot
Additional file 3 of Molecular delimitation of European leafy liverworts of the genus Calypogeia based on plastid super-barcodes
inferred← citeshttps://doi.org/10.6084/m9.figshare.12386306openalex-snapshot
Additional file 5 of Molecular delimitation of European leafy liverworts of the genus Calypogeia based on plastid super-barcodes
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Additional file 6 of Molecular delimitation of European leafy liverworts of the genus Calypogeia based on plastid super-barcodes
inferred← citeshttps://doi.org/10.63369/ijat.2026.22.4.1703-1726openalex-snapshot
Genetic characterization of Jatropha landraces in Nigeria: unlocking potential through rbcl marker analysis
inferred← citeshttps://doi.org/10.7287/peerj.8305v0.1/reviews/1openalex-snapshot
Peer Review #1 of "The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.8305v0.1/reviews/2openalex-snapshot
Peer Review #2 of "The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.8305v0.2/reviews/1openalex-snapshot
Peer Review #1 of "The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.8305v0.2/reviews/2openalex-snapshot
Peer Review #2 of "The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.8305openalex-snapshot
The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales
inferred← citeshttps://doi.org/10.7717/peerj.9314openalex-snapshot
Comparative analyses of 32 complete plastomes of Tef (Eragrostis tef ) accessions from Ethiopia: phylogenetic relationships and mutational hotspots
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