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Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant Seed Plants
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/0471650129.dob0522openalex-snapshot
PAUP * [Phylogenetic Analysis Using Parsimony (and Other Methods)]
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RNA editing in bryophytes and a molecular phylogeny of land plants.
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Complete Sequence of the Maize Chloroplast Genome: Gene Content, Hotspots of Divergence and Fine Tuning of Genetic Information by Transcript Editing
inferredcites →https://doi.org/10.1007/978-1-4615-3276-7openalex-snapshot
Molecular Systematics of Plants
inferredcites →https://doi.org/10.1007/978-1-4615-3276-7_4openalex-snapshot
Ribosomal RNA as a Phylogenetic Tool in Plant Systematics
inferredcites →https://doi.org/10.1007/bf00279998openalex-snapshot
Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16
inferredcites →https://doi.org/10.1007/bf00309543openalex-snapshot
Structure and differential expression of two distinct genes encoding the chloroplast elongation factor Tu in tobacco
inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
inferredcites →https://doi.org/10.1007/bf02173220openalex-snapshot
Ebb and flow of the chloroplast inverted repeat
inferredcites →https://doi.org/10.1007/bf02338839openalex-snapshot
Probability Distribution of Molecular Evolutionary Trees: A New Method of Phylogenetic Inference
inferredcites →https://doi.org/10.1007/bf02489441openalex-snapshot
Phylogeny of gymnosperms inferred fromrbcL gene sequences
inferredcites →https://doi.org/10.1007/s00239-001-0042-9openalex-snapshot
The Evolution of Gymnosperms Redrawn by Phytochrome Genes: The Gnetatae Appear at the Base of the Gymnosperms
inferredcites →https://doi.org/10.1007/s00239-003-2493-7openalex-snapshot
Whole Proteome Prokaryote Phylogeny Without Sequence Alignment: A K -String Composition Approach
inferredcites →https://doi.org/10.1007/s00239-003-2564-9openalex-snapshot
Dating the Monocot?Dicot Divergence and the Origin of Core Eudicots Using Whole Chloroplast Genomes
inferredcites →https://doi.org/10.1016/0003-9861(84)90061-4openalex-snapshot
Potassium, sodium, and chloride content of isolated intact chloroplasts in relation to ionic compartmentation in leaves
inferredcites →https://doi.org/10.1016/0034-6667(81)90076-2openalex-snapshot
The callistophytales (Pteridospermopsida): Reproductively sophisticated paleozoic gymnosperms
inferredcites →https://doi.org/10.1016/0034-6667(82)90035-5openalex-snapshot
New interpretations of the earliest conifers
inferredcites →https://doi.org/10.1016/0305-1978(92)90067-nopenalex-snapshot
A rare chloroplast-DNA structural mutation is shared by all conifers
inferredcites →https://doi.org/10.1016/j.ympev.2006.03.006openalex-snapshot
Seed plant phylogeny: Gnetophytes are derived conifers and a sister group to Pinaceae
inferredcites →https://doi.org/10.1016/s0378-1119(01)00613-8openalex-snapshot
The Arabidopsis chloroplast ribosomal protein L21 is encoded by a nuclear gene of mitochondrial origin
inferredcites →https://doi.org/10.1016/s1055-7903(03)00131-3openalex-snapshot
Inference of higher-order relationships in the cycads from a large chloroplast data set
inferredcites →https://doi.org/10.1016/s1360-1385(03)00190-0openalex-snapshot
Cycads: evolutionary innovations and the role of plant-derived neurotoxins
inferredcites →https://doi.org/10.1038/30234openalex-snapshot
Gene transfer to the nucleus and the evolution of chloroplasts
inferredcites →https://doi.org/10.1038/344262a0openalex-snapshot
Evolutionary transfer of the chloroplast tufA gene to the nucleus
inferredcites →https://doi.org/10.1038/35054555openalex-snapshot
Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants
inferredcites →https://doi.org/10.1038/387489a0openalex-snapshot
Evidence for a clade of nematodes, arthropods and other moulting animals
inferredcites →https://doi.org/10.1038/nature02361openalex-snapshot
Ferns diversified in the shadow of angiosperms
inferredcites →https://doi.org/10.1038/nrg1044openalex-snapshot
Phylogeny estimation: traditional and Bayesian approaches
inferredcites →https://doi.org/10.1073/pnas.032087199openalex-snapshot
Rate heterogeneity among lineages of tracheophytes: Integration of molecular and fossil data and evidence for molecular living fossils
inferredcites →https://doi.org/10.1073/pnas.162203299openalex-snapshot
The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum : Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants
inferredcites →https://doi.org/10.1073/pnas.182432999openalex-snapshot
Evolutionary analysis of Arabidopsis , cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
inferredcites →https://doi.org/10.1073/pnas.85.11.3898openalex-snapshot
Chloroplast genomes of two conifers lack a large inverted repeat and are extensively rearranged.
inferredcites →https://doi.org/10.1073/pnas.89.5.1856openalex-snapshot
Structural rearrangements of the chloroplast genome provide an important phylogenetic link in ferns.
inferredcites →https://doi.org/10.1073/pnas.91.21.9794openalex-snapshot
Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii.
inferredcites →https://doi.org/10.1073/pnas.93.16.8766openalex-snapshot
Creation of a novel protein-coding region at the RNA level in black pine chloroplasts: the pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms.
inferredcites →https://doi.org/10.1073/pnas.97.8.4086openalex-snapshot
Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers
inferredcites →https://doi.org/10.1073/pnas.97.8.4092openalex-snapshot
Phylogeny of seed plants based on all three genomic compartments: Extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers
inferredcites →https://doi.org/10.1079/9780851999043.0000openalex-snapshot
Plant diversity and evolution: genotypic and phenotypic variation in higher plants
inferredcites →https://doi.org/10.1079/9780851999043.0045openalex-snapshot
Chloroplast genomes of plants.
inferredcites →https://doi.org/10.1080/10635150600812619openalex-snapshot
Dating Dispersal and Radiation in the Gymnosperm Gnetum (Gnetales)—Clock Calibration When Outgroup Relationships Are Uncertain
inferredcites →https://doi.org/10.1080/106351598260987openalex-snapshot
Taxonomic Sampling, Phylogenetic Accuracy, and Investigator Bias
inferredcites →https://doi.org/10.1080/106351598260996openalex-snapshot
Is It Better to Add Taxa or Characters to a Difficult Phylogenetic Problem?
inferredcites →https://doi.org/10.1086/338321openalex-snapshot
Seed Plant Relationships and the Systematic Position of Gnetales Based on Nuclear and Chloroplast DNA: Conflicting Data, Rooting Problems, and the Monophyly of Conifers
inferredcites →https://doi.org/10.1086/378538openalex-snapshot
The Families and Genera of Cycads: A Molecular Phylogenetic Analysis of Cycadophyta Based on Nuclear and Plastid DNA Sequences
inferredcites →https://doi.org/10.1093/aob/mch138openalex-snapshot
A New Permian Gnetalean Cone as Fossil Evidence for Supporting Current Molecular Phylogeny
inferredcites →https://doi.org/10.1093/bib/5.2.150openalex-snapshot
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot
MODELTEST: testing the model of DNA substitution.
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/bth352openalex-snapshot
Automatic annotation of organellar genomes with DOGMA
inferredcites →https://doi.org/10.1093/dnares/11.4.247openalex-snapshot
Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants
inferredcites →https://doi.org/10.1093/dnares/9.5.157openalex-snapshot
Evolutionary Re-organisation of a Large Operon in Adzuki Bean Chloroplast DNA caused by Inverted Repeat Movement
inferredcites →https://doi.org/10.1093/molbev/msh081openalex-snapshot
Phylogeny and Comparative Substitution Rates of Frogs Inferred from Sequences of Three Nuclear Genes
inferredcites →https://doi.org/10.1093/molbev/msi173openalex-snapshot
Analysis of Acorus calamus Chloroplast Genome and Its Phylogenetic Implications
inferredcites →https://doi.org/10.1093/molbev/msj029openalex-snapshot
The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications
inferredcites →https://doi.org/10.1093/molbev/msk018openalex-snapshot
The Chloroplast Genome Sequence of Chara vulgaris Sheds New Light into the Closest Green Algal Relatives of Land Plants
inferredcites →https://doi.org/10.1093/molbev/msl054openalex-snapshot
The Evolution of Chloroplast RNA Editing
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003979openalex-snapshot
The Complete Mitochondrial DNA Sequence of Mesostigma viride Identifies This Green Alga as the Earliest Green Plant Divergence and Predicts a Highly Compact Mitochondrial Genome in the Ancestor of All Green Plants
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025597openalex-snapshot
Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025702openalex-snapshot
Molecular phylogeny of extant gymnosperms and seed plant evolution: analysis of nuclear 18S rRNA sequences
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026139openalex-snapshot
Spectral Analysis, Systematic Bias, and the Evolution of Chloroplasts
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026290openalex-snapshot
Multigene Phylogeny of Land Plants with Special Reference to Bryophytes and the Earliest Land Plants
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026357openalex-snapshot
Error, Bias, and Long-Branch Attraction in Data for Two Chloroplast Photosystem Genes in Seed Plants
inferredcites →https://doi.org/10.1093/sysbio/27.4.401openalex-snapshot
Cases in which Parsimony or Compatibility Methods will be Positively Misleading
inferredcites →https://doi.org/10.1093/sysbio/44.1.17openalex-snapshot
Performance of Phylogenetic Methods in Simulation
inferredcites →https://doi.org/10.1111/j.1096-0031.2005.00059.xopenalex-snapshot
A review of long‐branch attraction
inferredcites →https://doi.org/10.1126/science.255.5052.1697openalex-snapshot
Chloroplast DNA Evidence on the Ancient Evolutionary Split in Vascular Land Plants
inferredcites →https://doi.org/10.1146/annurev.pp.34.060183.001431openalex-snapshot
Organization and Structure of Chloroplast Genes
inferredcites →https://doi.org/10.21135/893273507.003openalex-snapshot
Morphology and Systematics of the Cycadales
inferredcites →https://doi.org/10.2307/2399902openalex-snapshot
Functional Constraints and rbcL Evidence for Land Plant Phylogeny
inferredcites →https://doi.org/10.2307/2412923openalex-snapshot
Cases in which Parsimony or Compatibility Methods Will be Positively Misleading
inferredcites →https://doi.org/10.2307/3243920openalex-snapshot
Paleobotany and the Evolution of Plants
inferredcites →https://doi.org/10.3732/ajb.89.12.1991openalex-snapshot
Relationships among seed plants inferred from highly conserved genes: sorting conflicting phylogenetic signals among ancient lineages
inferredcites →https://doi.org/10.3732/ajb.91.10.1582openalex-snapshot
Phylogeny and evolution of ferns (monilophytes) with a focus on the early leptosporangiate divergences
inferredcites →https://doi.org/10.3732/ajb.91.10.1599openalex-snapshot
Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Insight from newly sequenced chloroplast genome challenges the primitive position of Corydalis temulifolia (Papaveraceae)
inferred← citeshttps://doi.org/10.1002/ece3.7381openalex-snapshot
Molecular evolution and SSRs analysis based on the chloroplast genome ofCallitropsis funebris
inferred← citeshttps://doi.org/10.1002/tpg2.20130openalex-snapshot
The dynamic history of gymnosperm plastomes: Insights from structural characterization, comparative analysis, phylogenomics, and time divergence
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Comparative Genomics of Spruce and Other Gymnosperms
inferred← citeshttps://doi.org/10.1007/978-94-007-2920-9_5openalex-snapshot
Plastid Genomes of Seed Plants
inferred← citeshttps://doi.org/10.1007/s00239-008-9101-9openalex-snapshot
High Conservation of a 5′ Element Required for RNA Editing of a C Target in Chloroplast psbE Transcripts
inferred← citeshttps://doi.org/10.1007/s00294-009-0249-7openalex-snapshot
Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny
inferred← citeshttps://doi.org/10.1007/s00343-021-0027-zopenalex-snapshot
A genome-wide analysis of the chloroplast NADH dehydrogenase-like genes in Zostera marina
inferred← citeshttps://doi.org/10.1007/s00425-012-1744-5openalex-snapshot
Phylogenetic viewpoints on regulation of light harvesting and electron transport in eukaryotic photosynthetic organisms
inferred← citeshttps://doi.org/10.1007/s00438-015-1159-7openalex-snapshot
Non-functional plastid ndh gene fragments are present in the nuclear genome of Norway spruce (Picea abies L. Karsch): insights from in silico analysis of nuclear and organellar genomes
inferred← citeshttps://doi.org/10.1007/s00606-009-0210-8openalex-snapshot
Mutational dynamics and phylogenetic utility of noncoding chloroplast DNA
inferred← citeshttps://doi.org/10.1007/s11103-011-9762-4openalex-snapshot
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
inferred← citeshttps://doi.org/10.1007/s11295-016-0968-0openalex-snapshot
The plastome sequence of the endemic Amazonian conifer, Retrophyllum piresii (Silba) C.N.Page, reveals different recombination events and plastome isoforms
inferred← citeshttps://doi.org/10.1007/s11676-019-01088-4openalex-snapshot
Structural characterization and comparative analysis of the chloroplast genome of Ginkgo biloba and other gymnosperms
inferred← citeshttps://doi.org/10.1007/s11756-026-02160-1openalex-snapshot
Discrimination between the cultivated species Passiflora edulis and the new species Passiflora cacao using trnL intron sequence, morphology and reproductive system
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First Complete Chloroplast Genome of Parashorea lucida (Miq.) Kurz (Dipterocarpaceae): Phylogenetic Resolution and Genomic Insights into a Native Species and Near Threatened Dipterocarp of Indonesian Lowland Rainforests
inferred← citeshttps://doi.org/10.1016/b978-0-12-417163-3.00009-3openalex-snapshot
Prehistory of the Angiosperms
inferred← citeshttps://doi.org/10.1016/bs.abr.2017.11.013openalex-snapshot
Structural Diversity Among Plastid Genomes of Land Plants
inferred← citeshttps://doi.org/10.1016/bs.abr.2017.11.018openalex-snapshot
Evolution of Gymnosperm Plastid Genomes
inferred← citeshttps://doi.org/10.1016/j.aquabot.2017.09.003openalex-snapshot
The complete chloroplast DNA sequence of Trapa maximowiczii Korsh. (Trapaceae), and comparative analysis with other Myrtales species
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2009.01.012openalex-snapshot
Gene duplication, transfer, and evolution in the chloroplast genome
inferred← citeshttps://doi.org/10.1016/j.bse.2015.02.009openalex-snapshot
Higher substitution rates and lower dN/dS for the plastid genes in Gnetales than other gymnosperms
inferred← citeshttps://doi.org/10.1016/j.ejbt.2016.11.001openalex-snapshot
High temperature and UV-C treatments affect stilbenoid accumulation and related gene expression levels in Gnetum parvifolium
inferred← citeshttps://doi.org/10.1016/j.gene.2013.07.037openalex-snapshot
The complete chloroplast genome sequence of Mahonia bealei (Berberidaceae) reveals a significant expansion of the inverted repeat and phylogenetic relationship with other angiosperms
inferred← citeshttps://doi.org/10.1016/j.gene.2014.02.037openalex-snapshot
The complete chloroplast genome sequence of Taxus chinensis var. mairei (Taxaceae): loss of an inverted repeat region and comparative analysis with related species
inferred← citeshttps://doi.org/10.1016/j.gene.2015.12.005openalex-snapshot
The complete chloroplast genome of Gentiana straminea (Gentianaceae), an endemic species to the Sino-Himalayan subregion
inferred← citeshttps://doi.org/10.1016/j.plaphy.2010.04.009openalex-snapshot
Plastid ndh genes in plant evolution
inferred← citeshttps://doi.org/10.1016/j.pld.2019.10.001openalex-snapshot
Genetic characterization of the entire range of Cycas panzhihuaensis (Cycadaceae)
inferred← citeshttps://doi.org/10.1016/j.revpalbo.2023.105035openalex-snapshot
Archangelskyoxylon carlquistii gen. et sp. nov. Taxonomy and phylogeny of an unequivocal gnetoid Jurassic fossil wood from Argentina
inferred← citeshttps://doi.org/10.1016/j.ygeno.2015.07.004openalex-snapshot
Dynamics of chloroplast genomes in green plants
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.06.004openalex-snapshot
Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.03.002openalex-snapshot
How well do we understand the overall backbone of cycad phylogeny? New insights from a large, multigene plastid data set
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.05.003openalex-snapshot
Phylogeography of a living fossil: Pleistocene glaciations forced Ginkgo biloba L. (Ginkgoaceae) into two refuge areas in China with limited subsequent postglacial expansion
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.12.026openalex-snapshot
Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategy
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.03.010openalex-snapshot
First insights into fern matK phylogeny
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106729openalex-snapshot
Plastid phylogenomic data yield new and robust insights into the phylogeny of Cleisostoma–Gastrochilus clades (Orchidaceae, Aeridinae)
inferred← citeshttps://doi.org/10.1038/hdy.2012.2openalex-snapshot
Early evolutionary colocalization of the nuclear ribosomal 5S and 45S gene families in seed plants: evidence from the living fossil gymnosperm Ginkgo biloba
inferred← citeshttps://doi.org/10.1038/s41438-017-0002-1openalex-snapshot
Organellar genome assembly methods and comparative analysis of horticultural plants
inferred← citeshttps://doi.org/10.1038/s41598-017-01518-5openalex-snapshot
Inferring the evolutionary mechanism of the chloroplast genome size by comparing whole-chloroplast genome sequences in seed plants
inferred← citeshttps://doi.org/10.1038/s41598-020-80225-0openalex-snapshot
Uncovering dynamic evolution in the plastid genome of seven Ligusticum species provides insights into species discrimination and phylogenetic implications
inferred← citeshttps://doi.org/10.1038/srep31473openalex-snapshot
Comparison of intraspecific, interspecific and intergeneric chloroplast diversity in Cycads
inferred← citeshttps://doi.org/10.1073/pnas.0709121104openalex-snapshot
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
inferred← citeshttps://doi.org/10.1073/pnas.0806759105openalex-snapshot
Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions
inferred← citeshttps://doi.org/10.1073/pnas.1403363111openalex-snapshot
The dynamic history of plastid genomes in the Campanulaceae sensu lato is unique among angiosperms
inferred← citeshttps://doi.org/10.1093/aob/mcaf198openalex-snapshot
Repeated loss of plastid NDH during evolution of land plants
inferred← citeshttps://doi.org/10.1093/botlinnean/boab006openalex-snapshot
Codon usage pattern in Gnetales evolved in close accordance with the Gnetifer hypothesis
inferred← citeshttps://doi.org/10.1093/botlinnean/boz020openalex-snapshot
Dynamism in plastome structure observed across the phylogenetic tree of ferns
inferred← citeshttps://doi.org/10.1093/gbe/evq036openalex-snapshot
Comparative Chloroplast Genomics Reveals the Evolution of Pinaceae Genera and Subfamilies
inferred← citeshttps://doi.org/10.1093/gbe/evr026openalex-snapshot
Comparative Chloroplast Genomes of Pinaceae: Insights into the Mechanism of Diversified Genomic Organizations
inferred← citeshttps://doi.org/10.1093/gbe/evr095openalex-snapshot
Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny
inferred← citeshttps://doi.org/10.1093/gbe/evs021openalex-snapshot
The Complete Chloroplast Genome of Ginkgo biloba Reveals the Mechanism of Inverted Repeat Contraction
inferred← citeshttps://doi.org/10.1093/gbe/evt001openalex-snapshot
Chloroplast Phylogenomics Indicates that Ginkgo biloba Is Sister to Cycads
inferred← citeshttps://doi.org/10.1093/gbe/evt042openalex-snapshot
The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and Insights into the Loss of Inverted Repeat Copies in Gymnosperms
inferred← citeshttps://doi.org/10.1093/gbe/evt063openalex-snapshot
Sequencing Angiosperm Plastid Genomes Made Easy: A Complete Set of Universal Primers and a Case Study on the Phylogeny of Saxifragales
inferred← citeshttps://doi.org/10.1093/gbe/evu046openalex-snapshot
Predominant and Substoichiometric Isomers of the Plastid Genome Coexist within Juniperus Plants and Have Shifted Multiple Times during Cupressophyte Evolution
inferred← citeshttps://doi.org/10.1093/gbe/evv125openalex-snapshot
Evolutionary Stasis in Cycad Plastomes and the First Case of Plastome GC-Biased Gene Conversion
inferred← citeshttps://doi.org/10.1093/gbe/evv244openalex-snapshot
Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation
inferred← citeshttps://doi.org/10.1093/gbe/evw106openalex-snapshot
Revisiting the Plastid Phylogenomics of Pinaceae with Two Complete Plastomes ofPseudolarixandTsuga
inferred← citeshttps://doi.org/10.1093/gbe/evw109openalex-snapshot
Birth of Four Chimeric Plastid Gene Clusters in Japanese Umbrella Pine
inferred← citeshttps://doi.org/10.1093/gbe/evz187openalex-snapshot
Plastome Reduction in the Only Parasitic Gymnosperm Parasitaxus Is Due to Losses of Photosynthesis but Not Housekeeping Genes and Apparently Involves the Secondary Gain of a Large Inverted Repeat
inferred← citeshttps://doi.org/10.1093/molbev/msm133openalex-snapshot
Transfer of Chloroplast Genomic DNA to Mitochondrial Genome Occurred At Least 300 MYA
inferred← citeshttps://doi.org/10.1093/molbev/msn009openalex-snapshot
The Mitochondrial Genome of the Gymnosperm Cycas taitungensis Contains a Novel Family of Short Interspersed Elements, Bpu Sequences, and Abundant RNA Editing Sites
inferred← citeshttps://doi.org/10.1093/molbev/msq170openalex-snapshot
The Position of Gnetales among Seed Plants: Overcoming Pitfalls of Chloroplast Phylogenomics
inferred← citeshttps://doi.org/10.1093/molbev/msq229openalex-snapshot
Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage
inferred← citeshttps://doi.org/10.1093/molbev/mst257openalex-snapshot
Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates
inferred← citeshttps://doi.org/10.1093/sysbio/sys070openalex-snapshot
The Evolutionary Root of Flowering Plants
inferred← citeshttps://doi.org/10.1093/sysbio/syv028openalex-snapshot
The Root of Flowering Plants and Total Evidence
inferred← citeshttps://doi.org/10.1098/rstb.2009.0233openalex-snapshot
A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants
inferred← citeshttps://doi.org/10.1111/1755-0998.12251openalex-snapshot
Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs
inferred← citeshttps://doi.org/10.1111/1755-0998.13085openalex-snapshot
RADseq as a valuable tool for plants with large genomes—A case study in cycads
inferred← citeshttps://doi.org/10.1111/cla.12419openalex-snapshot
Exploring the phylogeny of the marattialean ferns
inferred← citeshttps://doi.org/10.1111/ele.13886/v1/decision1openalex-snapshot
Decision letter for "Keep your friends close: Host compartmentalisation of microbial communities facilitates decoupling from effects of habitat fragmentation"
inferred← citeshttps://doi.org/10.1111/ele.13886/v1/review1openalex-snapshot
Review for "Keep your friends close: Host compartmentalisation of microbial communities facilitates decoupling from effects of habitat fragmentation"
inferred← citeshttps://doi.org/10.1111/ele.13886/v1/review2openalex-snapshot
Review for "Keep your friends close: Host compartmentalisation of microbial communities facilitates decoupling from effects of habitat fragmentation"
inferred← citeshttps://doi.org/10.1111/ele.13886/v1/review3openalex-snapshot
Review for "Keep your friends close: Host compartmentalisation of microbial communities facilitates decoupling from effects of habitat fragmentation"
inferred← citeshttps://doi.org/10.1111/ele.13886/v2/decision1openalex-snapshot
Decision letter for "Keep your friends close: Host compartmentalisation of microbial communities facilitates decoupling from effects of habitat fragmentation"
inferred← citeshttps://doi.org/10.1111/ele.13886/v2/review2openalex-snapshot
Review for "Keep your friends close: Host compartmentalisation of microbial communities facilitates decoupling from effects of habitat fragmentation"
inferred← citeshttps://doi.org/10.1111/ele.13886/v3/decision1openalex-snapshot
Decision letter for "Keep your friends close: Host compartmentalisation of microbial communities facilitates decoupling from effects of habitat fragmentation"
inferred← citeshttps://doi.org/10.1111/j.1365-294x.2010.04787.xopenalex-snapshot
Chloroplast DNA‐based studies in molecular ecology may be compromised by nuclear‐encoded plastid sequence
inferred← citeshttps://doi.org/10.1111/j.1399-3054.2012.01598.xopenalex-snapshot
Activity, polypeptide and gene identification of thylakoid Ndh complex in trees: potential physiological relevance of fluorescence assays
inferred← citeshttps://doi.org/10.1111/j.1744-7909.2011.01082.xopenalex-snapshot
RNA Editing Sites Exist in Protein-coding Genes in the Chloroplast Genome of Cycas taitungensis
inferred← citeshttps://doi.org/10.1111/j.1759-6831.2010.00071.xopenalex-snapshot
Plastid genome sequencing, comparative genomics, and phylogenomics: Current status and prospects
inferred← citeshttps://doi.org/10.1111/j.1759-6831.2011.00123.xopenalex-snapshot
An embryological study and systematic significance of the primitive gymnosperm Ginkgo biloba
inferred← citeshttps://doi.org/10.1111/njb.02072openalex-snapshot
The complete plastid genome sequence of Trichomanes trollii (Hymenophyllaceae)
inferred← citeshttps://doi.org/10.1111/tpj.16775openalex-snapshot
Insights into U‐to‐C RNA editing from the lycophyte Phylloglossum drummondii
inferred← citeshttps://doi.org/10.11646/phytotaxa.9.1.11openalex-snapshot
20,000 species and five key markers: The status of molecular bryophyte phylogenetics
inferred← citeshttps://doi.org/10.1186/1471-2105-12-s1-s14openalex-snapshot
An ILP solution for the gene duplication problem
inferred← citeshttps://doi.org/10.1186/1471-2148-10-321openalex-snapshot
Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages
inferred← citeshttps://doi.org/10.1186/1471-2148-8-130openalex-snapshot
The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates
inferred← citeshttps://doi.org/10.1186/1471-2229-10-211openalex-snapshot
Identification of new polymorphic regions and differentiation of cultivated olives (Olea europaea L.) through plastome sequence comparison
inferred← citeshttps://doi.org/10.1186/1471-2229-10-68openalex-snapshot
Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae
inferred← citeshttps://doi.org/10.1186/1471-2229-8-59openalex-snapshot
Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale – A wild ancestor of cultivated buckwheat
inferred← citeshttps://doi.org/10.1186/1471-2229-8-70openalex-snapshot
Complete nucleotide sequence of the Cryptomeria japonicaD. Don. chloroplast genome and comparative chloroplast genomics: diversified genomic structure of coniferous species
inferred← citeshttps://doi.org/10.1186/s12864-021-07626-xopenalex-snapshot
Decoding first complete chloroplast genome of toothbrush tree (Salvadora persica L.): insight into genome evolution, sequence divergence and phylogenetic relationship within Brassicales
inferred← citeshttps://doi.org/10.1186/s12864-023-09439-6openalex-snapshot
Insights into phylogenetic relationships in Pinus inferred from a comparative analysis of complete chloroplast genomes
inferred← citeshttps://doi.org/10.1186/s12864-024-10296-0openalex-snapshot
The size diversity of the Pteridaceae family chloroplast genome is caused by overlong intergenic spacers
inferred← citeshttps://doi.org/10.1186/s12864-026-12802-yopenalex-snapshot
Comparing chloroplast genomes of Tulipa species: genome evolution and phylogenomic implications
inferred← citeshttps://doi.org/10.1186/s12896-024-00843-8openalex-snapshot
Extraction and analysis of high-quality chloroplast DNA with reduced nuclear DNA for medicinal plants
inferred← citeshttps://doi.org/10.1371/journal.pone.0048995openalex-snapshot
Reference-Free Comparative Genomics of 174 Chloroplasts
inferred← citeshttps://doi.org/10.1371/journal.pone.0062548openalex-snapshot
Complete Plastid Genome Sequence of the Basal Asterid Ardisia polysticta Miq. and Comparative Analyses of Asterid Plastid Genomes
inferred← citeshttps://doi.org/10.1371/journal.pone.0080870openalex-snapshot
Phylogenomics and Coalescent Analyses Resolve Extant Seed Plant Relationships
inferred← citeshttps://doi.org/10.1371/journal.pone.0084792openalex-snapshot
An Improved Protocol for Intact Chloroplasts and cpDNA Isolation in Conifers
inferred← citeshttps://doi.org/10.1371/journal.pone.0090618openalex-snapshot
The Complete Chloroplast Genome Sequence of Podocarpus lambertii: Genome Structure, Evolutionary Aspects, Gene Content and SSR Detection
inferred← citeshttps://doi.org/10.1371/journal.pone.0128126openalex-snapshot
Complete Chloroplast Genome of the Wollemi Pine (Wollemia nobilis): Structure and Evolution
inferred← citeshttps://doi.org/10.1371/journal.pone.0138727openalex-snapshot
The Chloroplast Genome of Elaeagnus macrophylla and trnH Duplication Event in Elaeagnaceae
inferred← citeshttps://doi.org/10.1371/journal.pone.0141329openalex-snapshot
Analysis of the Complete Chloroplast Genome of a Medicinal Plant, Dianthus superbus var. longicalyncinus, from a Comparative Genomics Perspective
inferred← citeshttps://doi.org/10.1371/journal.pone.0192966openalex-snapshot
Complete chloroplast genome sequence and comparative analysis of loblolly pine (Pinus taeda L.) with related species
inferred← citeshttps://doi.org/10.14348/molcells.2014.2296openalex-snapshot
Chloroplast Genome Evolution in Early Diverged Leptosporangiate Ferns
inferred← citeshttps://doi.org/10.1515/hf-2018-0155openalex-snapshot
The complete plastome of real yellow wood (Podocarpus latifolius): gene organization and comparison with related species
inferred← citeshttps://doi.org/10.17660/actahortic.2020.1290.8openalex-snapshot
The complete chloroplast genome of Prunus armeniaca
inferred← citeshttps://doi.org/10.18174/390196openalex-snapshot
Utilization of complete chloroplast genomes for phylogenetic studies
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3155001/v1openalex-snapshot
The control of hormogonia induction/suppression by the alteration of scmucilage signaling molecules in Cycas plant in an endosymbiotic cyanobacterium
inferred← citeshttps://doi.org/10.21203/rs.3.rs-99774/v1openalex-snapshot
A Genome-Wide Analysis of the Chloroplast NADH Dehydrogenase-like Complex in Zostera Marina: Identification, Splicing, Editing and Profiles of Expression
inferred← citeshttps://doi.org/10.31274/etd-180810-2300openalex-snapshot
Phylogeny reconciliation under gene tree parsimony
inferred← citeshttps://doi.org/10.3389/fmicb.2019.01888openalex-snapshot
Perspectives on Endosymbiosis in Coralloid Roots: Association of Cycads and Cyanobacteria
inferred← citeshttps://doi.org/10.3389/fpls.2014.00696openalex-snapshot
The complete chloroplast genome provides insight into the evolution and polymorphism of Panax ginseng
inferred← citeshttps://doi.org/10.3389/fpls.2015.00447openalex-snapshot
The complete chloroplast genome sequence of the relict woody plant Metasequoia glyptostroboides Hu et Cheng
inferred← citeshttps://doi.org/10.3389/fpls.2016.00174openalex-snapshot
Transcriptome Characterization of Gnetum parvifolium Reveals Candidate Genes Involved in Important Secondary Metabolic Pathways of Flavonoids and Stilbenoids
inferred← citeshttps://doi.org/10.3389/fpls.2017.00715openalex-snapshot
The Complete Plastome Sequences of Four Orchid Species: Insights into the Evolution of the Orchidaceae and the Utility of Plastomic Mutational Hotspots
inferred← citeshttps://doi.org/10.3389/fpls.2017.01713openalex-snapshot
Comparative Analysis of the Complete Plastomes of Apostasia wallichii and Neuwiedia singapureana (Apostasioideae) Reveals Different Evolutionary Dynamics of IR/SSC Boundary among Photosynthetic Orchids
inferred← citeshttps://doi.org/10.3389/fpls.2019.00039openalex-snapshot
Significance of Photosynthetic Characters in the Evolution of Asian Gnetum (Gnetales)
inferred← citeshttps://doi.org/10.3390/f10070600openalex-snapshot
Complete Chloroplast Genome of Pinus densiflora Siebold & Zucc. and Comparative Analysis with Five Pine Trees
inferred← citeshttps://doi.org/10.3390/f12060710openalex-snapshot
Comparison and Phylogenetic Analyses of Nine Complete Chloroplast Genomes of Zingibereae
inferred← citeshttps://doi.org/10.3390/ijms222212505openalex-snapshot
On the Edge of Dispensability, the Chloroplast ndh Genes
inferred← citeshttps://doi.org/10.3390/ijms25042278openalex-snapshot
Extreme Reconfiguration of Plastid Genomes in Papaveraceae: Rearrangements, Gene Loss, Pseudogenization, IR Expansion, and Repeats
inferred← citeshttps://doi.org/10.3390/microorganisms11092364openalex-snapshot
Core Endophytic Bacteria and Their Roles in the Coralloid Roots of Cultivated Cycas revoluta (Cycadaceae)
inferred← citeshttps://doi.org/10.3390/plants14091335openalex-snapshot
Phylogenomic Inference Suggests Differential Deep Time Phylogenetic Signals from Nuclear and Organellar Genomes in Gymnosperms
inferred← citeshttps://doi.org/10.3390/su10020536openalex-snapshot
Recent Progress in Perennial Buckwheat Development
inferred← citeshttps://doi.org/10.3732/ajb.0800178openalex-snapshot
Phylogenetic relationships among seed plants: Persistent questions and the limits of molecular data
inferred← citeshttps://doi.org/10.3732/ajb.1500184openalex-snapshot
Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat
inferred← citeshttps://doi.org/10.5091/plecevo.2011.535openalex-snapshot
Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure
inferred← citeshttps://doi.org/10.5479/si.0081024x.95.175openalex-snapshot
Podocarp Roots, Mycorrhizas, and Nodules
inferred← citeshttps://doi.org/10.6084/m9.figshare.25670142openalex-snapshot
Additional file 1 of The size diversity of the Pteridaceae family chloroplast genome is caused by overlong intergenic spacers
inferred← citeshttps://doi.org/10.6084/m9.figshare.25670349openalex-snapshot
Additional file 2 of The size diversity of the Pteridaceae family chloroplast genome is caused by overlong intergenic spacers
inferred← citeshttps://doi.org/10.6084/m9.figshare.26599070openalex-snapshot
Additional file 1 of Insights into phylogenetic relationships in Pinus inferred from a comparative analysis of complete chloroplast genomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.26599073openalex-snapshot
Additional file 2 of Insights into phylogenetic relationships in Pinus inferred from a comparative analysis of complete chloroplast genomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.26599076openalex-snapshot
Additional file 3 of Insights into phylogenetic relationships in Pinus inferred from a comparative analysis of complete chloroplast genomes
inferred← citeshttps://doi.org/10.6084/m9.figshare.26599079openalex-snapshot
Additional file 4 of Insights into phylogenetic relationships in Pinus inferred from a comparative analysis of complete chloroplast genomes
inferred← citeshttps://doi.org/10.7287/peerj.8305v0.1/reviews/1openalex-snapshot
Peer Review #1 of "The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.8305v0.1/reviews/2openalex-snapshot
Peer Review #2 of "The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.8305v0.2/reviews/1openalex-snapshot
Peer Review #1 of "The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.8305v0.2/reviews/2openalex-snapshot
Peer Review #2 of "The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.8305openalex-snapshot
The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales
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