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Discovery of new STAT3 inhibitors as anticancer agents using ligand-receptor contact fingerprints and docking-augmented machine learning
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Targeting constitutively active STAT3 in chronic lymphocytic leukemia: A clinical trial of the STAT3 inhibitor pyrimethamine with pharmacodynamic analyses
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Will Artificial Intelligence for Drug Discovery Impact Clinical Pharmacology?
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Constitutive activation of STAT 3 in breast cancer cells: A review
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Detailed analysis of grid‐based molecular docking: A case study of CDOCKER—A CHARMm‐based MD docking algorithm
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Synthesis and biological activities of tetrahydroquinazoline analogs of aminopterin and methotrexate
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Scoring noncovalent protein-ligand interactions: A continuous differentiable function tuned to compute binding affinities
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The STAT3 inhibitor pyrimethamine displays anti-cancer and immune stimulatory effects in murine models of breast cancer
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Naive Bayes: applications, variations and vulnerabilities: a review of literature with code snippets for implementation
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Evaluation of the performance of 3D virtual screening protocols: RMSD comparisons, enrichment assessments, and decoy selection—What can we learn from earlier mistakes?
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Combining docking-based comparative intermolecular contacts analysis and k-nearest neighbor correlation for the discovery of new check point kinase 1 inhibitors
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Combining molecular dynamics simulation and ligand-receptor contacts analysis as a new approach for pharmacophore modeling: beta-secretase 1 and check point kinase 1 as case studies
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Interpretation of machine learning models using shapley values: application to compound potency and multi-target activity predictions
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Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC
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Software for molecular docking: a review
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Identification and classification of brain tumor MRI images with feature extraction using DWT and probabilistic neural network
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The MTT cell viability assay for cytotoxicity testing in multidrug-resistant human leukemic cells
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Neural Networks for Identification of Nonlinear Systems: An Overview
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Encyclopedia of Bioinformatics and Computational Biology
inferredcites →https://doi.org/10.1016/j.bbagen.2019.05.019openalex-snapshot
Unexpected implications of STAT3 acetylation revealed by genetic encoding of acetyl-lysine
inferredcites →https://doi.org/10.1016/j.bbrc.2008.04.049openalex-snapshot
Crystal structure of unphosphorylated STAT3 core fragment
inferredcites →https://doi.org/10.1016/j.bmc.2011.10.071openalex-snapshot
Elaborate ligand-based modeling and subsequent synthetic exploration unveil new nanomolar Ca2+/calmodulin-dependent protein kinase II inhibitory leads
inferredcites →https://doi.org/10.1016/j.cbi.2019.05.047openalex-snapshot
Assessment of scoring functions and in silico parameters for AChE-ligand interactions as a tool for predicting inhibition potency
inferredcites →https://doi.org/10.1016/j.ccr.2007.07.006openalex-snapshot
HIF and c-Myc: Sibling Rivals for Control of Cancer Cell Metabolism and Proliferation
inferredcites →https://doi.org/10.1016/j.chembiol.2006.09.018openalex-snapshot
Stattic: A Small-Molecule Inhibitor of STAT3 Activation and Dimerization
inferredcites →https://doi.org/10.1016/j.csbj.2021.08.023openalex-snapshot
Docking-generated multiple ligand poses for bootstrapping bioactivity classifying Machine Learning: Repurposing covalent inhibitors for COVID-19-related TMPRSS2 as case study
inferredcites →https://doi.org/10.1016/j.ctrv.2015.04.008openalex-snapshot
Silibinin and STAT3: A natural way of targeting transcription factors for cancer therapy
inferredcites →https://doi.org/10.1016/j.drudis.2014.10.012openalex-snapshot
Machine-learning approaches in drug discovery: methods and applications
inferredcites →https://doi.org/10.1016/j.ejmech.2020.112428openalex-snapshot
Design, synthesis and biological evaluation of novel potent STAT3 inhibitors based on BBI608 for cancer therapy
inferredcites →https://doi.org/10.1016/j.fct.2018.04.028openalex-snapshot
Silibinin is a direct inhibitor of STAT3
inferredcites →https://doi.org/10.1016/j.febslet.2013.01.065openalex-snapshot
Observation of unphosphorylated STAT3 core protein binding to target ds DNA by PEMSA and X‐ray crystallography
inferredcites →https://doi.org/10.1016/j.jbc.2021.101531openalex-snapshot
The antimicrobial drug pyrimethamine inhibits STAT3 transcriptional activity by targeting the enzyme dihydrofolate reductase
inferredcites →https://doi.org/10.1016/j.jmgm.2004.11.007openalex-snapshot
LigScore: a novel scoring function for predicting binding affinities
inferredcites →https://doi.org/10.1016/j.lfs.2019.117241openalex-snapshot
Revisiting the development of small molecular inhibitors that directly target the signal transducer and activator of transcription 3 (STAT3) domains
inferredcites →https://doi.org/10.1016/j.molcel.2016.12.022openalex-snapshot
Distinct Roles of Brd2 and Brd4 in Potentiating the Transcriptional Program for Th17 Cell Differentiation
inferredcites →https://doi.org/10.1016/s0167-7012(02)00080-5openalex-snapshot
A probabilistic neural network approach for modeling and classification of bacterial growth/no-growth data
inferredcites →https://doi.org/10.1016/s0169-409x(00)00129-0openalex-snapshot
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings 1PII of original article: S0169-409X(96)00423-1. The article was originally published in Advanced Drug Delivery Reviews 23 (1997) 3–25. 1
inferredcites →https://doi.org/10.1016/s0169-409x(96)00423-1openalex-snapshot
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
inferredcites →https://doi.org/10.1016/s1093-3263(01)00125-5openalex-snapshot
Consensus scoring for ligand/protein interactions
inferredcites →https://doi.org/10.1016/s1093-3263(02)00164-xopenalex-snapshot
LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites
inferredcites →https://doi.org/10.1017/s0950268819001481openalex-snapshot
Applications of machine learning techniques to predict filariasis using socio-economic factors
inferredcites →https://doi.org/10.1021/acs.jcim.1c01078openalex-snapshot
Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy
inferredcites →https://doi.org/10.1021/acs.jmedchem.0c01705openalex-snapshot
Discovery of Novel Azetidine Amides as Potent Small-Molecule STAT3 Inhibitors
inferredcites →https://doi.org/10.1021/acs.jmedchem.9b01101openalex-snapshot
Interpretation of Compound Activity Predictions from Complex Machine Learning Models Using Local Approximations and Shapley Values
inferredcites →https://doi.org/10.1021/acschembio.5b00945openalex-snapshot
Strategies and Approaches of Targeting STAT3 for Cancer Treatment
inferredcites →https://doi.org/10.1021/ci100368topenalex-snapshot
Docking-Based Comparative Intermolecular Contacts Analysis as New 3-D QSAR Concept for Validating Docking Studies and in Silico Screening: NMT and GP Inhibitors as Case Studies
inferredcites →https://doi.org/10.1021/ci6004299openalex-snapshot
Validation Studies of the Site-Directed Docking Program LibDock
inferredcites →https://doi.org/10.1021/ci800293nopenalex-snapshot
Validation of Molecular Docking Programs for Virtual Screening against Dihydropteroate Synthase
inferredcites →https://doi.org/10.1021/jm00145a012openalex-snapshot
Synthesis of the antileukemic agents 5,10-dideazaaminopterin and 5,10-dideaza-5,6,7,8-tetrahydroaminopterin
inferredcites →https://doi.org/10.1021/jm020017nopenalex-snapshot
Molecular Properties That Influence the Oral Bioavailability of Drug Candidates
inferredcites →https://doi.org/10.1021/jm049092jopenalex-snapshot
Virtual Screening Workflow Development Guided by the “Receiver Operating Characteristic” Curve Approach. Application to High-Throughput Docking on Metabotropic Glutamate Receptor Subtype 4
inferredcites →https://doi.org/10.1021/jm058047oopenalex-snapshot
Effects of Variable Docking Conditions and Scoring Functions on Corresponding Protein-Aligned Comparative Molecular Field Analysis Models Constructed from Diverse Human Protein Tyrosine Phosphatase 1B Inhibitors
inferredcites →https://doi.org/10.1038/28101openalex-snapshot
Three-dimensional structure of the Stat3β homodimer bound to DNA
inferredcites →https://doi.org/10.1038/d41573-019-00197-3openalex-snapshot
Dumping STAT3 in the trash
inferredcites →https://doi.org/10.1038/leu.2014.298openalex-snapshot
Immunosuppressive therapy of LGL leukemia: prospective multicenter phase II study by the Eastern Cooperative Oncology Group (E5998)
inferredcites →https://doi.org/10.1038/s41467-020-17920-zopenalex-snapshot
Selective inhibition of STAT3 signaling using monobodies targeting the coiled-coil and N-terminal domains
inferredcites →https://doi.org/10.1038/s41573-019-0024-5openalex-snapshot
Applications of machine learning in drug discovery and development
inferredcites →https://doi.org/10.1074/jbc.ra120.016645openalex-snapshot
The STAT3 inhibitor Stattic acts independently of STAT3 to decrease histone acetylation and modulate gene expression
inferredcites →https://doi.org/10.1080/07391102.2009.10507315openalex-snapshot
Weighted Equation and Rules—A Novel Concept for Evaluating Protein-Ligand Interaction
inferredcites →https://doi.org/10.1093/bioinformatics/btt765openalex-snapshot
The EBI RDF platform: linked open data for the life sciences
inferredcites →https://doi.org/10.1093/nar/gkv352openalex-snapshot
ChEMBL web services: streamlining access to drug discovery data and utilities
inferredcites →https://doi.org/10.1097/00001622-199911000-00010openalex-snapshot
STAT proteins as novel targets for cancer therapy
inferredcites →https://doi.org/10.1111/j.1742-4658.2010.07965.xopenalex-snapshot
Bcl‐2 and Bcl‐xL play important roles in the crosstalk between autophagy and apoptosis
inferredcites →https://doi.org/10.1124/mi.11.1.4openalex-snapshot
STAT3 SIGNALING: Anticancer Strategies and Challenges
inferredcites →https://doi.org/10.1128/mcb.00060-15openalex-snapshot
Impact of the N-Terminal Domain of STAT3 in STAT3-Dependent Transcriptional Activity
inferredcites →https://doi.org/10.1152/ajprenal.00603.2019openalex-snapshot
Pharmacokinetics and pharmacodynamics of TTI-101, a STAT3 inhibitor that blocks muscle proteolysis in rats with chronic kidney disease
inferredcites →https://doi.org/10.11613/bm.2012.031openalex-snapshot
Interrater reliability: the kappa statistic
inferredcites →https://doi.org/10.1182/blood.v124.21.3602.3602openalex-snapshot
Targeting of MDS and AML Stem Cells Via Inhibition of STAT3 By Pyrimethamine
inferredcites →https://doi.org/10.1186/1476-4598-9-217openalex-snapshot
A novel small molecule inhibits STAT3 phosphorylation and DNA binding activity and exhibits potent growth suppressive activity in human cancer cells
inferredcites →https://doi.org/10.15388/21-infor457openalex-snapshot
Study of Multi-Class Classification Algorithms’ Performance on Highly Imbalanced Network Intrusion Datasets
inferredcites →https://doi.org/10.2147/ott.s313507openalex-snapshot
A Novel Biological Activity of the STAT3 Inhibitor Stattic in Inhibiting Glutathione Reductase and Suppressing the Tumorigenicity of Human Cervical Cancer Cells via a ROS-Dependent Pathway
inferredcites →https://doi.org/10.2174/1568026619666190620145052openalex-snapshot
STAT3: A Potential Drug Target for Tumor and Inflammation
inferredcites →https://doi.org/10.2174/1573409916666200611122736openalex-snapshot
Elaboration of Novel TTK1 Inhibitory Leads via QSAR-Guided Selection of Crystallographic Pharmacophores Followed By In Vitro Assay
inferredcites →https://doi.org/10.3390/ijms20184331openalex-snapshot
Molecular Docking: Shifting Paradigms in Drug Discovery
inferredcites →https://doi.org/10.4155/fmc.11.22openalex-snapshot
Signal Transducer and Activator of Transcription 3 (STAT3): A Promising Target for Anticancer Therapy
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Computational Advancements and In Vitro Evaluation in Pre-clinical Anticancer Drug Discovery and Development
inferred← citeshttps://doi.org/10.1007/978-3-032-01967-7_25openalex-snapshot
Study of the Mutational Profile of the STAT3 Protein in Relation to Cancer Treatment
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Lacosamide prevents cyclophosphamide-induced testicular dysfunction via inhibition of NF-κB/IL-6/STAT-3 and JNK1/Caspase-3 axes with AR and HO-1 preservation: in vivo and in silico evidence
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Computational workflow for discovering small molecular binders for shallow binding sites by integrating molecular dynamics simulation, pharmacophore modeling, and machine learning: STAT3 as case study
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Computer-aided discovery of CDK16 inhibitors: a docking-augmented machine learning regression modelling approach
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Oxidation-derived metabolites sustain the antioxidant network of quercetin
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STAT3 inhibitors combined with retinol binding protein 4 complex ameliorate DEN-induced liver carcinogenesis in mice and induce apoptosis via GRP78/ATF6/CHOP signaling pathway
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Protein characteristics substantially influence the propensity of activity cliffs among kinase inhibitors
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Innovative integration of molecular docking and machine learning for drug discovery: from virtual screening to nanomolar inhibitors
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