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Properties of developmental gene regulatory networks
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/0092-8674(91)90292-7openalex-snapshot
The Drosophila single-minded gene encodes a helix-loop-helix protein that acts as a master regulator of CNS midline development
inferredcites →https://doi.org/10.1016/j.devcel.2006.01.011openalex-snapshot
Dorsal-Ventral Pattern of Delta Trafficking Is Established by a Snail-Tom-Neuralized Pathway
inferredcites →https://doi.org/10.1016/j.ydbio.2005.09.047openalex-snapshot
cis-Regulatory inputs of the wnt8 gene in the sea urchin endomesoderm network
inferredcites →https://doi.org/10.1016/j.ydbio.2006.05.037openalex-snapshot
cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification
inferredcites →https://doi.org/10.1016/j.ydbio.2007.03.033openalex-snapshot
Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network
inferredcites →https://doi.org/10.1016/j.ydbio.2007.10.037openalex-snapshot
Characterization of the Drosophila segment determination morphome
inferredcites →https://doi.org/10.1016/j.ydbio.2008.02.056openalex-snapshot
A new method, using cis-regulatory control, for blocking embryonic gene expression
inferredcites →https://doi.org/10.1073/pnas.0408031102openalex-snapshot
Gene regulatory networks for development
inferredcites →https://doi.org/10.1073/pnas.0705324104openalex-snapshot
A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres
inferredcites →https://doi.org/10.1073/pnas.0711220105openalex-snapshot
Global regulatory logic for specification of an embryonic cell lineage
inferredcites →https://doi.org/10.1073/pnas.0804282105openalex-snapshot
Redundant mechanisms mediate bristle patterning on the Drosophila thorax
inferredcites →https://doi.org/10.1073/pnas.0806009105openalex-snapshot
Dissecting early regulatory relationships in the lamprey neural crest gene network
inferredcites →https://doi.org/10.1073/pnas.0806070105openalex-snapshot
Regulatory logic of neuronal diversity: Terminal selector genes and selector motifs
inferredcites →https://doi.org/10.1073/pnas.0806238105openalex-snapshot
Synteny and candidate gene prediction using an anchored linkage map of Astyanax mexicanus
inferredcites →https://doi.org/10.1073/pnas.0806360105openalex-snapshot
A regulatory module embedded in the coding region of Hoxa2 controls expression in rhombomere 2
inferredcites →https://doi.org/10.1073/pnas.0806377105openalex-snapshot
The Caenorhabditis elegans vulva: A post-embryonic gene regulatory network controlling organogenesis
inferredcites →https://doi.org/10.1073/pnas.0806442105openalex-snapshot
Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo
inferredcites →https://doi.org/10.1073/pnas.0806476105openalex-snapshot
How the Dorsal gradient works: Insights from postgenome technologies
inferredcites →https://doi.org/10.1073/pnas.0806501105openalex-snapshot
A gene regulatory network armature for T lymphocyte specification
inferredcites →https://doi.org/10.1073/pnas.0807878105openalex-snapshot
Anterior-posterior positional information in the absence of a strong Bicoid gradient
inferredcites →https://doi.org/10.1073/pnas.2235868100openalex-snapshot
Developmental gene regulatory network architecture across 500 million years of echinoderm evolution
inferredcites →https://doi.org/10.1101/gad.11.23.3265openalex-snapshot
TheXenopus Brachyurypromoter is activated by FGF and low concentrations ofactivinandsuppressed by high concentrationsof activin and by paired-type homeodomain proteins
inferredcites →https://doi.org/10.1126/science.1146524openalex-snapshot
A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression
inferredcites →https://doi.org/10.1242/dev.018101openalex-snapshot
LvNumb works synergistically with Notch signaling to specify non-skeletal mesoderm cells in the sea urchin embryo
inferredcites →https://doi.org/10.1242/dev.125.19.3887openalex-snapshot
The T-box transcription factor Brachyury regulates expression of eFGF through binding to a non-palindromic response element
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Comprehensive Annotation of Transcription Factors, Chromatin-Associated Factors, and Basal Transcription Machinery in the Pea Aphid, Acyrthosiphon Pisum, and Development of the Atfdb Database, a Resource for Studies of Transcriptional Regulation
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Segmental arithmetic: summing up the Hox gene regulatory network for hindbrain development in chordates
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The Physical Mechanical Processes that Shape Tissues in the Early Embryo
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Evolution of Gene Regulatory Networks
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Quantitative Approaches to Model Pluripotency and Differentiation in Stem Cells
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Multicolor Labeling in Developmental Gene Regulatory Network Analysis
inferred← citeshttps://doi.org/10.1007/978-3-319-15045-1_3openalex-snapshot
Evolution as a Largely Autonomous Process
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Searching for Modular Structure in Complex Phenotypes: Inferences from Network Theory
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inferred← citeshttps://doi.org/10.1016/b978-0-12-394447-4.40010-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-816221-7.00001-xopenalex-snapshot
Pluripotent stem cell biology and engineering
inferred← citeshttps://doi.org/10.1016/b978-0-12-821618-7.40010-6openalex-snapshot
Transcription Factor Networks
inferred← citeshttps://doi.org/10.1016/b978-0-323-95227-9.00015-4openalex-snapshot
Contributions of marine invertebrates to our understanding of human health and disease
inferred← citeshttps://doi.org/10.1016/b978-0-443-15750-9.00108-7openalex-snapshot
Conservation and Evolution of Gene Networks Driving Development
inferred← citeshttps://doi.org/10.1016/b978-0-443-16092-9.00021-7openalex-snapshot
Biomolecular networks
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2020.04.001openalex-snapshot
The function of architecture and logic in developmental gene regulatory networks
inferred← citeshttps://doi.org/10.1016/j.bpj.2016.11.901openalex-snapshot
DNA Occupancy of Polymerizing Transcription Factors: A Chemical Model of the ETS Family Factor Yan
inferred← citeshttps://doi.org/10.1016/j.cell.2011.10.047openalex-snapshot
Gene Regulatory Logic for Reading the Sonic Hedgehog Signaling Gradient in the Vertebrate Neural Tube
inferred← citeshttps://doi.org/10.1016/j.cell.2012.12.009openalex-snapshot
DNA-Binding Specificities of Human Transcription Factors
inferred← citeshttps://doi.org/10.1016/j.celrep.2022.111832openalex-snapshot
Developmental phenomics suggests that H3K4 monomethylation confers multi-level phenotypic robustness
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Regulation, development, and evolution of caste ratios in the hyperdiverse ant genus Pheidole
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Hierarchical Evolution of the Bacterial Sporulation Network
inferred← citeshttps://doi.org/10.1016/j.devcel.2009.10.021openalex-snapshot
Pax3:Foxc2 Reciprocal Repression in the Somite Modulates Muscular versus Vascular Cell Fate Choice in Multipotent Progenitors
inferred← citeshttps://doi.org/10.1016/j.devcel.2010.10.006openalex-snapshot
Differentiation-Specific Histone Modifications Reveal Dynamic Chromatin Interactions and Partners for the Intestinal Transcription Factor CDX2
inferred← citeshttps://doi.org/10.1016/j.devcel.2013.06.023openalex-snapshot
miR-142-3p Controls the Specification of Definitive Hemangioblasts during Ontogeny
inferred← citeshttps://doi.org/10.1016/j.devcel.2021.03.024openalex-snapshot
The connectome of neural crest enhancers reveals regulatory features of signaling systems
inferred← citeshttps://doi.org/10.1016/j.febslet.2009.11.060openalex-snapshot
Modularity and design principles in the sea urchin embryo gene regulatory network
inferred← citeshttps://doi.org/10.1016/j.gde.2009.10.003openalex-snapshot
Evolution of transcriptional control in mammals
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Network design principles from the sea urchin embryo
inferred← citeshttps://doi.org/10.1016/j.ibmb.2024.104217openalex-snapshot
Annotation of transcription factors, chromatin-associated factors, and basal transcription machinery in the pea aphid, Acyrthosiphon pisum, and development of the ATFdb database, a resource for studies of transcriptional regulation
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Reorganization of H3K9me heterochromatin leads to neuronal impairment via the cascading destruction of the KDM3B-centered epigenomic network
inferred← citeshttps://doi.org/10.1016/j.margen.2018.09.009openalex-snapshot
Mechanistic philosophies of development: Theodor Boveri and Eric H. Davidson
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Autoregressive models for gene regulatory network inference: Sparsity, stability and causality issues
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Analyzing the stability of gene expression using a simple reaction-diffusion model in an early Drosophila embryo
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Functional requirements of cellular differentiation: lessons from Bacillus subtilis
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MDIC3: Matrix decomposition to infer cell-cell communication
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Vision from next generation sequencing: Multi-dimensional genome-wide analysis for producing gene regulatory networks underlying retinal development, aging and disease
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Weighted correlation network analysis and differential expression analysis identify auxin-related genes responsible for adventitious root formation in an epiphytic Dendrobium orchid (Dendrobium moniliforme (L.) Sw.)
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Genes and functions controlled by floral organ identity genes
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Molecular circuits for genomic recording of cellular events
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Modeling the dynamics of transcriptional gene regulatory networks for animal development
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The gene regulatory network basis of the “community effect,” and analysis of a sea urchin embryo example
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Challenges for modeling global gene regulatory networks during development: Insights from Drosophila
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BMP signaling coordinates gene expression and cell migration during precardiac mesoderm development
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C. elegans BED domain transcription factor BED-3 controls lineage-specific cell proliferation during organogenesis
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Cis-regulatory analysis of the sea urchin pigment cell gene polyketide synthase
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Size matters: The contribution of cell proliferation to the progression of the specification Drosophila eye gene regulatory network
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Perturbation analysis analyzed—mathematical modeling of intact and perturbed gene regulatory circuits for animal development
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Evolutionary developmental biology its roots and characteristics
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Cis-regulatory logic driving glial cells missing: Self-sustaining circuitry in later embryogenesis
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The transcriptional programme controlled by Runx1 during early embryonic blood development
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Initial deployment of the cardiogenic gene regulatory network in the basal chordate, Ciona intestinalis
inferred← citeshttps://doi.org/10.1016/j.ydbio.2013.05.025openalex-snapshot
The ascl1a and dlx genes have a regulatory role in the development of GABAergic interneurons in the zebrafish diencephalon
inferred← citeshttps://doi.org/10.1016/j.ydbio.2013.10.025openalex-snapshot
A Pou5f1/Oct4 dependent Klf2a, Klf2b, and Klf17 regulatory sub-network contributes to EVL and ectoderm development during zebrafish embryogenesis
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MED GATA factors promote robust development of the C. elegans endoderm
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Eric Davidson: Steps to a gene regulatory network for development
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CDX4 regulates the progression of neural maturation in the spinal cord
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Evolutionary genomics of the Fox genes: Origin of gene families and the ancestry of gene clusters
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Chapter 3 Genotype–Phenotype Mapping
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A blueprint for engineering cell fate: current technologies to reprogram cell identity
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A cell-based computational model of early embryogenesis coupling mechanical behaviour and gene regulation
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Towards genome-scale signalling-network reconstructions
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Maintaining differentiated cellular identity
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Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina
inferred← citeshttps://doi.org/10.1038/s41467-019-09050-yopenalex-snapshot
Etv6 activates vegfa expression through positive and negative transcriptional regulatory networks in Xenopus embryos
inferred← citeshttps://doi.org/10.1038/s41540-026-00664-9openalex-snapshot
Stochastic modeling of epigenetic memory
inferred← citeshttps://doi.org/10.1038/s41576-021-00355-7openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41576-026-00939-1openalex-snapshot
Gene regulatory networks: from correlative models to causal explanations
inferred← citeshttps://doi.org/10.1038/s41598-024-59247-5openalex-snapshot
The transcription factor OCT6 promotes the dissolution of the naïve pluripotent state by repressing Nanog and activating a formative state gene regulatory network
inferred← citeshttps://doi.org/10.1038/s41598-024-60432-9openalex-snapshot
A new suite of reporter vectors and a novel landing site survey system to study cis-regulatory elements in diverse insect species
inferred← citeshttps://doi.org/10.1038/s42003-024-05985-1openalex-snapshot
A neural network-based model framework for cell-fate decisions and development
inferred← citeshttps://doi.org/10.1038/s44319-024-00139-0openalex-snapshot
Cellular remodeling and JAK inhibition promote zygotic gene expression in the Ciona germline
inferred← citeshttps://doi.org/10.1038/srep11126openalex-snapshot
Co-existence of intact stemness and priming of neural differentiation programs in mES cells lacking Trim71
inferred← citeshttps://doi.org/10.1051/jbio/2014027openalex-snapshot
La marche génétique de l’évolution
inferred← citeshttps://doi.org/10.1056/nejmra0907175openalex-snapshot
Genomic Medicine — An Updated Primer
inferred← citeshttps://doi.org/10.1073/pnas.1003530107openalex-snapshot
Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors
inferred← citeshttps://doi.org/10.1073/pnas.1217538110openalex-snapshot
Dpp-induced Egfr signaling triggers postembryonic wing development in Drosophila
inferred← citeshttps://doi.org/10.1073/pnas.1518876112openalex-snapshot
Developmental biologist Eric H. Davidson, 1937–2015
inferred← citeshttps://doi.org/10.1073/pnas.1610612114openalex-snapshot
Dynamic regulation of Nanog and stem cell-signaling pathways by Hoxa1 during early neuro-ectodermal differentiation of ES cells
inferred← citeshttps://doi.org/10.1073/pnas.1610616114openalex-snapshot
Assessing regulatory information in developmental gene regulatory networks
inferred← citeshttps://doi.org/10.1074/jbc.m109.016162openalex-snapshot
Zfp206, Oct4, and Sox2 Are Integrated Components of a Transcriptional Regulatory Network in Embryonic Stem Cells
inferred← citeshttps://doi.org/10.1080/15476286.2023.2258028openalex-snapshot
A conserved HOTAIRM1-HOXA1 regulatory axis contributes early to neuronal differentiation
inferred← citeshttps://doi.org/10.1088/1478-3975/12/5/056004openalex-snapshot
Discovery and information-theoretic characterization of transcription factor binding sites that act cooperatively
inferred← citeshttps://doi.org/10.1089/cmb.2019.0114openalex-snapshot
Gene Regulatory Networks Governing the Generation and Regeneration of Blood
inferred← citeshttps://doi.org/10.1093/aob/mcw024openalex-snapshot
Convergent occurrence of the developmental hourglass in plant and animal embryogenesis?
inferred← citeshttps://doi.org/10.1093/bib/bbad129openalex-snapshot
NSRGRN: a network structure refinement method for gene regulatory network inference
inferred← citeshttps://doi.org/10.1093/bib/bbaf470openalex-snapshot
Machine learning methods for gene regulatory network inference
inferred← citeshttps://doi.org/10.1093/bioinformatics/btab099openalex-snapshot
Inference of gene regulatory networks using pseudo-time series data
inferred← citeshttps://doi.org/10.1093/bioinformatics/btp200openalex-snapshot
A general computational method for robustness analysis with applications to synthetic gene networks
inferred← citeshttps://doi.org/10.1093/bioinformatics/btq333openalex-snapshot
Modeling and analyzing complex biological networks incooperating experimental information on both network topology and stable states
inferred← citeshttps://doi.org/10.1093/icb/icaa116openalex-snapshot
The Role of Core and Variable Gene Regulatory Network Modules in Tooth Development and Evolution
inferred← citeshttps://doi.org/10.1093/icb/icab167openalex-snapshot
A Unifying Framework for Understanding Biological Structures and Functions Across Levels of Biological Organization
inferred← citeshttps://doi.org/10.1093/molbev/msz300openalex-snapshot
Enhancers Facilitate the Birth of De Novo Genes and Gene Integration into Regulatory Networks
inferred← citeshttps://doi.org/10.1093/nar/gkaa1014openalex-snapshot
TENET: gene network reconstruction using transfer entropy reveals key regulatory factors from single cell transcriptomic data
inferred← citeshttps://doi.org/10.1096/fj.09-1101ufmopenalex-snapshot
Monumental Revolutions: Scientific, Sanitary and ʼOmicMonumental Revolutions: Scientific, Sanitary and ʼOmic
inferred← citeshttps://doi.org/10.1098/rsif.2012.0525openalex-snapshot
Cell signalling regulates dynamics of Nanog distribution in embryonic stem cell populations
inferred← citeshttps://doi.org/10.1100/2012/435257openalex-snapshot
A Review of Integration Strategies to Support Gene Regulatory Network Construction
inferred← citeshttps://doi.org/10.1101/2021.07.12.452040openalex-snapshot
Cellular remodeling and JAK inhibition promote zygotic gene expression in the Ciona germline
inferred← citeshttps://doi.org/10.1101/2021.08.24.457588openalex-snapshot
Feedforward regulatory logic underlies robustness of the specification-to-differentiation transition and fidelity of terminal cell fate during C. elegans endoderm development
inferred← citeshttps://doi.org/10.1101/2022.03.15.484407openalex-snapshot
Developmental phenomics suggests that H3K4 monomethylation catalyzed by Trr functions as a phenotypic capacitor
inferred← citeshttps://doi.org/10.1101/2022.08.17.504180openalex-snapshot
A conserved HOTAIRM1-HOXA1 regulatory axis coordinates early neuronal differentiation
inferred← citeshttps://doi.org/10.1101/2023.07.13.548918openalex-snapshot
The transcription factor OCT6 promotes the dissolution of the naïve pluripotent state by repressing Nanog and activating a formative state gene regulatory network
inferred← citeshttps://doi.org/10.1101/2024.05.03.592313openalex-snapshot
SEQSIM – A novel bioinformatics tool for comparisons of upstream gene regions – a case study of calcium binding protein spermatid associated 1 (CABS1)
inferred← citeshttps://doi.org/10.1101/2024.10.18.618987openalex-snapshot
Zebrahub-Multiome: Uncovering Gene Regulatory Network Dynamics During Zebrafish Embryogenesis
inferred← citeshttps://doi.org/10.1101/2025.09.10.675109openalex-snapshot
Integrins pattern the Drosophila embryonic neuroepithelium by influencing progenitor morphodynamics, division and position
inferred← citeshttps://doi.org/10.1101/2025.10.07.681016openalex-snapshot
Dynamic landscapes of gene regulatory networks in early mammalian neurogenesis: Insights into brain evolution and disorder risk
inferred← citeshttps://doi.org/10.1101/616581openalex-snapshot
Enhancers facilitate the birth of de novo genes and their integration into regulatory networks
inferred← citeshttps://doi.org/10.1101/gad.1890410openalex-snapshot
Precise temporal control of the eye regulatory gene Pax6 via enhancer-binding site affinity
inferred← citeshttps://doi.org/10.1101/gr.181305.114openalex-snapshot
A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development
inferred← citeshttps://doi.org/10.1101/gr.220517.117openalex-snapshot
Ancient antagonism between CELF and RBFOX families tunes mRNA splicing outcomes
inferred← citeshttps://doi.org/10.1101/gr.275684.121openalex-snapshot
Global patterns of enhancer activity during sea urchin embryogenesis assessed by eRNA profiling
inferred← citeshttps://doi.org/10.1109/iccme.2013.6548334openalex-snapshot
An algorithm for detecting fixed points of boolean network
inferred← citeshttps://doi.org/10.1109/tcbb.2023.3282212openalex-snapshot
CNNGRN: A Convolutional Neural Network-Based Method for Gene Regulatory Network Inference From Bulk Time-Series Expression Data
inferred← citeshttps://doi.org/10.1109/tcbbio.2025.3576169openalex-snapshot
diffMIN: Reconstructing Sample-Specific Differential Gene Regulatory Networks Based on Mutual Information
inferred← citeshttps://doi.org/10.1111/ede.12217openalex-snapshot
The origins of developmental gene regulation
inferred← citeshttps://doi.org/10.1111/j.1365-2796.2011.02498.xopenalex-snapshot
Systems cancer medicine: towards realization of predictive, preventive, personalized and participatory (P4) medicine
inferred← citeshttps://doi.org/10.1111/j.1574-6976.2010.00235.xopenalex-snapshot
The regulatory action of the myxobacterial CarD/CarG complex: a bacterial enhanceosome?
inferred← citeshttps://doi.org/10.1111/mmi.14249openalex-snapshot
Systematic analysis of the Myxococcus xanthus developmental gene regulatory network supports posttranslational regulation of FruA by C‐signaling
inferred← citeshttps://doi.org/10.1111/nph.17397openalex-snapshot
Repressors of anthocyanin biosynthesis
inferred← citeshttps://doi.org/10.1111/nph.70513openalex-snapshot
A U‐box E 3 ubiquitin ligase C m PUB 15 targets C m MYB 73 to regulate anthocyanin biosynthesis in response to low temperatures in chrysanthemum
inferred← citeshttps://doi.org/10.1126/science.aad0635openalex-snapshot
Measurement of gene regulation in individual cells reveals rapid switching between promoter states
inferred← citeshttps://doi.org/10.1128/jb.00958-15openalex-snapshot
A Membrane-Embedded Amino Acid Couples the SpoIIQ Channel Protein to Anti-Sigma Factor Transcriptional Repression during Bacillus subtilis Sporulation
inferred← citeshttps://doi.org/10.1128/mcb.01185-12openalex-snapshot
Intestinal Master Transcription Factor CDX2 Controls Chromatin Access for Partner Transcription Factor Binding
inferred← citeshttps://doi.org/10.1128/mcb.06374-11openalex-snapshot
Cardiac Expression of ms1/STARS, a Novel Gene Involved in Cardiac Development and Disease, Is Regulated by GATA4
inferred← citeshttps://doi.org/10.1146/annurev-cellbio-111315-125218openalex-snapshot
Transcriptional Control of Developmental Cell Behaviors
inferred← citeshttps://doi.org/10.1146/annurev-genet-110711-155437openalex-snapshot
Disentangling the Many Layers of Eukaryotic Transcriptional Regulation
inferred← citeshttps://doi.org/10.11575/prism/5021openalex-snapshot
Topological stability and dynamic resilience in complex networks
inferred← citeshttps://doi.org/10.1179/2050854914y.0000000019openalex-snapshot
Prenatal Chromosomal Microarray for the Catholic Physician
inferred← citeshttps://doi.org/10.1186/1471-2148-11-363openalex-snapshot
Model transcriptional networks with continuously varying expression levels
inferred← citeshttps://doi.org/10.1186/1471-2148-11-5openalex-snapshot
Phenotypic plasticity can facilitate adaptive evolution in gene regulatory circuits
inferred← citeshttps://doi.org/10.1186/1471-2148-13-91openalex-snapshot
Genetic and environmental factors affecting cryptic variations in gene regulatory networks
inferred← citeshttps://doi.org/10.1186/1471-2164-15-534openalex-snapshot
Identification of cis-regulatory modules encoding temporal dynamics during development
inferred← citeshttps://doi.org/10.1186/1752-0509-6-31openalex-snapshot
Spatiotemporal network motif reveals the biological traits of developmental gene regulatory networks in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1186/1752-0509-8-3openalex-snapshot
Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns
inferred← citeshttps://doi.org/10.1186/2041-9139-4-16openalex-snapshot
A quantitative reference transcriptome for Nematostella vectensis earlyembryonic development: a pipeline for de novo assembly in emergingmodel systems
inferred← citeshttps://doi.org/10.1186/gb-2009-10-5-218openalex-snapshot
Learning to get along despite struggling to get by
inferred← citeshttps://doi.org/10.1186/s12859-025-06160-xopenalex-snapshot
SEQSIM: A novel bioinformatics tool for comparisons of promoter regions—a case study of calcium binding protein spermatid associated 1 (CABS1)
inferred← citeshttps://doi.org/10.1186/s12864-021-07936-0openalex-snapshot
Identification and prediction of developmental enhancers in sea urchin embryos
inferred← citeshttps://doi.org/10.1186/s12896-016-0293-6openalex-snapshot
Characterization of transcription factor response kinetics in parallel
inferred← citeshttps://doi.org/10.1186/s13227-019-0137-2openalex-snapshot
Variable levels of drift in tunicate cardiopharyngeal gene regulatory elements
inferred← citeshttps://doi.org/10.1242/dev.048652openalex-snapshot
Activation of the skeletogenic gene regulatory network in the early sea urchin embryo
inferred← citeshttps://doi.org/10.1242/dev.048967openalex-snapshot
Evolutionary crossroads in developmental biology: sea urchins
inferred← citeshttps://doi.org/10.1242/dev.068395openalex-snapshot
Dynamic in vivo binding of transcription factors to cis-regulatory modules ofcerandgscin the stepwise formation of the Spemann–Mangold organizer
inferred← citeshttps://doi.org/10.1242/dev.077842openalex-snapshot
Integration of an abdominal Hox complex with Pax2 yields cell-specific EGF secretion from Drosophila sensory precursor cells
inferred← citeshttps://doi.org/10.1242/dev.085423openalex-snapshot
Competition among gene regulatory networks imposes order within the eye-antennal disc of Drosophila
inferred← citeshttps://doi.org/10.1242/dev.085464openalex-snapshot
Evolutionary crossroads in developmental biology
inferred← citeshttps://doi.org/10.1242/dev.095802openalex-snapshot
Foxa2 acts as a co-activator potentiating expression of the Nurr1-induced DA phenotype via epigenetic regulation
inferred← citeshttps://doi.org/10.1242/dev.200337openalex-snapshot
Feedforward regulatory logic controls the specification-to-differentiation transition and terminal cell fate during Caenorhabditis elegans endoderm development
inferred← citeshttps://doi.org/10.1242/dev.200984openalex-snapshot
The GATA factor ELT-3 specifies endoderm in Caenorhabditis angaria in an ancestral gene network
inferred← citeshttps://doi.org/10.1242/dev.202991openalex-snapshot
Stable germline transgenesis using the Minos Tc1/ mariner element in the sea urchin Lytechinus pictus
inferred← citeshttps://doi.org/10.12688/f1000research.7381.1openalex-snapshot
Developmental gene regulatory networks in sea urchins and what we can learn from them
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1000936openalex-snapshot
A Boolean Model of the Gene Regulatory Network Underlying Mammalian Cortical Area Development
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1003173openalex-snapshot
Simulating Cortical Development as a Self Constructing Process: A Novel Multi-Scale Approach Combining Molecular and Physical Aspects
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1003281openalex-snapshot
Reverse-Engineering Post-Transcriptional Regulation of Gap Genes in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1371/journal.pgen.1006441openalex-snapshot
The Gene Regulatory Network of Lens Induction Is Wired through Meis-Dependent Shadow Enhancers of Pax6
inferred← citeshttps://doi.org/10.1371/journal.pgen.1006462openalex-snapshot
Retinal Expression of the Drosophila eyes absent Gene Is Controlled by Several Cooperatively Acting Cis-regulatory Elements
inferred← citeshttps://doi.org/10.1371/journal.pgen.1009296openalex-snapshot
A regulatory sub-circuit downstream of Wnt signaling controls developmental transitions in neural crest formation
inferred← citeshttps://doi.org/10.1371/journal.pgen.1011361openalex-snapshot
SEM-2/SoxC regulates multiple aspects of C. elegans postembryonic mesoderm development
inferred← citeshttps://doi.org/10.1371/journal.pone.0025354openalex-snapshot
Transcriptional Networks in Epithelial-Mesenchymal Transition
inferred← citeshttps://doi.org/10.1371/journal.pone.0062641openalex-snapshot
Uncovering a Dynamic Feature of the Transcriptional Regulatory Network for Anterior-Posterior Patterning in the Drosophila Embryo
inferred← citeshttps://doi.org/10.1371/journal.pone.0083364openalex-snapshot
A Provisional Gene Regulatory Atlas for Mouse Heart Development
inferred← citeshttps://doi.org/10.1371/journal.pone.0099553openalex-snapshot
Discrete Levels of Twist Activity Are Required to Direct Distinct Cell Functions during Gastrulation and Somatic Myogenesis
inferred← citeshttps://doi.org/10.1371/journal.pone.0145825openalex-snapshot
De Novo Assembly and Characterization of Early Embryonic Transcriptome of the Horseshoe Crab Tachypleus tridentatus
inferred← citeshttps://doi.org/10.1371/journal.pone.0170969openalex-snapshot
An Intronic cis-Regulatory Element Is Crucial for the Alpha Tubulin Pl-Tuba1a Gene Activation in the Ciliary Band and Animal Pole Neurogenic Domains during Sea Urchin Development
inferred← citeshttps://doi.org/10.1534/g3.119.400603openalex-snapshot
Classification-Based Inference of Dynamical Models of Gene Regulatory Networks
inferred← citeshttps://doi.org/10.1534/genetics.113.151217openalex-snapshot
Dissecting High-Dimensional Phenotypes with Bayesian Sparse Factor Analysis of Genetic Covariance Matrices
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