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A cell-based computational model of early embryogenesis coupling mechanical behaviour and gene regulation
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Stages of embryonic development of the zebrafish
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Delta-Notch Signaling and Drosophila Cell Fate Choice
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The Cellular Potts Model and Biophysical Properties of Cells, Tissues and Morphogenesis
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Vertex Models of Epithelial Morphogenesis
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Modularity and design principles in the sea urchin embryo gene regulatory network
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Transcriptional regulation by the numbers: models
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Differential adhesion in morphogenesis: a modern view
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XIAP Monoubiquitylates Groucho/TLE to Promote Canonical Wnt Signaling
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Computational and mathematical methods for morphogenetic gradient analysis, boundary formation and axonal targeting
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Delaunay-Object-Dynamics: Cell Mechanics with a 3D Kinetic and Dynamic Weighted Delaunay-Triangulation
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A three-dimensional model of cell movement in multicellular systems
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A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage
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Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation
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Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
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Modelling and analysis of gene regulatory networks
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Cell adhesion and cortex contractility determine cell patterning in the Drosophila retina
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Properties of developmental gene regulatory networks
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EphrinB2 coordinates the formation of a morphological boundary and cell epithelialization during somite segmentation
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Coaction of intercellular adhesion and cortical tension specifies tissue surface tension
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Predictive computation of genomic logic processing functions in embryonic development
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Dynamic cross-links tune the solid–fluid behavior of living cells
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Transcriptional regulatory cascades in development: Initial rates, not steady state, determine network kinetics
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A cell-based simulation software for multi-cellular systems
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LBIBCell: a cell-based simulation environment for morphogenetic problems
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Turing's theory of morphogenesis of 1952 and the subsequent discovery of the crucial role of local self-enhancement and long-range inhibition
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Default repression and Notch signaling: Hairless acts as an adaptor to recruit the corepressors Groucho and dCtBP to Suppressor of Hairless
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Simulation of the differential adhesion driven rearrangement of biological cells
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Simulation of biological cell sorting using a two-dimensional extended Potts model
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VirtualLeaf: An Open-Source Framework for Cell-Based Modeling of Plant Tissue Growth and Development
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Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy
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Physical Biology Returns to Morphogenesis
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Boundaries in Development: Formation and Function
inferredcites →https://doi.org/10.1242/bio.20134614openalex-snapshot
Non-directional radial intercalation dominates deep cell behavior during zebrafish epiboly
inferredcites →https://doi.org/10.1242/dev.108.4.569openalex-snapshot
Cell movements during epiboly and gastrulation in zebrafish
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A flipbook of zebrafish embryogenesis
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Morphological boundary forms by a novel inductive event mediated by Lunatic fringe and Notch during somitic segmentation
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A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis
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Using cellzilla for plant growth simulations at the cellular level
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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A coupled mechano-biochemical model for cell polarity guided anisotropic root growth
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