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Rapid radiation in a highly diverse marine environment
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Lack of mtDNA differentiation among hamlets ( Hypoplectrus , Serranidae)
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Social-trap or mimicry? An empirical evaluation of the Hypoplectrus unicolor–Chaetodon capistratus association in Bocas del Toro, Panama
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Fast and Accurate Shared Segment Detection and Relatedness Estimation in Un-phased Genetic Data via TRUFFLE
inferredcites →https://doi.org/10.1016/j.cell.2006.04.043openalex-snapshot
Regulation of Body Pigmentation by the Abdominal-B Hox Protein and Its Gain and Loss in Drosophila Evolution
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Hybridization Reveals the Evolving Genomic Architecture of Speciation
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Expression of Hox paralog group 13 genes in adult and developing Megalobrama amblycephala
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A Conserved Regulatory Logic Controls Temporal Identity in Mouse Neural Progenitors
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A Combinatorial View on Speciation and Adaptive Radiation
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Aquatic Landscape Genomics and Environmental Effects on Genetic Variation
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Differences in expression pattern and function between zebrafish hoxc13 orthologs: recruitment of Hoxc13b into an early embryonic role
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The relationship between mating system and simultaneous hermaphroditism in the coral reef fish, Hypoplectrus nigricans (Serranidae)
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Basic Local Alignment Search Tool
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Evolution of Darwin’s finches and their beaks revealed by genome sequencing
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Nextflow enables reproducible computational workflows
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Genomic islands of divergence are not affected by geography of speciation in sunflowers
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Genome-wide efficient mixed-model analysis for association studies
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The life aquatic: advances in marine vertebrate genomics
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Visual mate preference evolution during butterfly speciation is linked to neural processing genes
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Complex modular architecture around a simple toolkit of wing pattern genes
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Mosaic genome evolution in a recent and rapid avian radiation
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Inter-chromosomal coupling between vision and pigmentation genes during genomic divergence
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An inverse latitudinal gradient in speciation rate for marine fishes
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The ecological and genomic basis of explosive adaptive radiation
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Drivers and dynamics of a massive adaptive radiation in cichlid fishes
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From DNA to Diversity: Molecular Genetics and the Evolution of Animal Design
inferredcites →https://doi.org/10.1046/j.1365-294x.2003.01946.xopenalex-snapshot
Genetic mosaic in a marine species flock
inferredcites →https://doi.org/10.1046/j.1365-294x.2003.01966.xopenalex-snapshot
Lack of mitochondrial genetic structure in hamlets (Hypoplectrusspp.): recent speciation or ongoing hybridization?
inferredcites →https://doi.org/10.1046/j.1420-9101.2001.00335.xopenalex-snapshot
The genic view of the process of speciation
inferredcites →https://doi.org/10.1073/pnas.1803069115openalex-snapshot
Casz1 controls higher-order nuclear organization in rod photoreceptors
inferredcites →https://doi.org/10.1073/pnas.2020457119openalex-snapshot
Rapid radiation in a highly diverse marine environment
inferredcites →https://doi.org/10.1080/10635150701472164openalex-snapshot
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
inferredcites →https://doi.org/10.1086/283686openalex-snapshot
Sexual Allocation in a Simultaneously Hermaphroditic Coral Reef Fish
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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
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Comparative Evolution of an Archetypal Adaptive Radiation: Innovation and Opportunity inAnolisLizards
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Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr642openalex-snapshot
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs
inferredcites →https://doi.org/10.1093/bioinformatics/btx734openalex-snapshot
bioalcidae, samjs and vcffilterjs: object-oriented formatters and filters for bioinformatics files
inferredcites →https://doi.org/10.1093/bioinformatics/btz305openalex-snapshot
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
inferredcites →https://doi.org/10.1093/gbe/evz110openalex-snapshot
Recent Secondary Contacts, Linked Selection, and Variable Recombination Rates Shape Genomic Diversity in the Model Species Anolis carolinensis
inferredcites →https://doi.org/10.1093/genetics/160.3.1217openalex-snapshot
A Model-Based Method for Identifying Species Hybrids Using Multilocus Genetic Data
inferredcites →https://doi.org/10.1093/gigascience/giab008openalex-snapshot
Twelve years of SAMtools and BCFtools
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inferredcites →https://doi.org/10.1093/icb/ict077openalex-snapshot
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inferredcites →https://doi.org/10.1093/jhered/89.5.438openalex-snapshot
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inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
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inferredcites →https://doi.org/10.1093/molbev/msw079openalex-snapshot
Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
inferredcites →https://doi.org/10.1093/molbev/msz043openalex-snapshot
Polymorphism-Aware Species Trees with Advanced Mutation Models, Bootstrap, and Rate Heterogeneity
inferredcites →https://doi.org/10.1093/oso/9780198505235.001.0001openalex-snapshot
The Ecology of Adaptive Radiation
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1098/rspb.2006.0435openalex-snapshot
Colour pattern as a single trait driving speciation inHypoplectruscoral reef fishes?
inferredcites →https://doi.org/10.1098/rspb.2011.1549openalex-snapshot
Pairing dynamics and the origin of species
inferredcites →https://doi.org/10.1098/rspb.2016.1821openalex-snapshot
Recombination in the eggs and sperm in a simultaneously hermaphroditic vertebrate
inferredcites →https://doi.org/10.1101/gr.094052.109openalex-snapshot
Fast model-based estimation of ancestry in unrelated individuals
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.196485.115openalex-snapshot
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
inferredcites →https://doi.org/10.1101/gr.212522.116openalex-snapshot
Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin's finches
inferredcites →https://doi.org/10.1111/1755-0998.12597openalex-snapshot
parallelnewhybrid: an R package for the parallelization of hybrid detection using newhybrids
inferredcites →https://doi.org/10.1111/1755-0998.13265openalex-snapshot
Dsuite ‐ Fast D ‐statistics and related admixture evidence from VCF files
inferredcites →https://doi.org/10.1111/evo.12524openalex-snapshot
Warning signals are seductive: Relative contributions of color and pattern to predator avoidance and mate attraction inHeliconiusbutterflies
inferredcites →https://doi.org/10.1111/j.1095-8649.2007.01485.xopenalex-snapshot
Ecological differences between hamlet (Hypoplectrus: Serranidae) colour morphs: between‐morph variation in diet
inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03654.xopenalex-snapshot
Population genetic analyses ofHypoplectruscoral reef fishes provide evidence that local processes are operating during the early stages of marine adaptive radiations
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05734.xopenalex-snapshot
On the spatial scale of dispersal in coral reef fishes
inferredcites →https://doi.org/10.1111/j.1466-8238.2010.00539.xopenalex-snapshot
Signatures of speciation? Distribution and diversity of Hypoplectrus (Teleostei: Serranidae) colour morphotypes
inferredcites →https://doi.org/10.1111/j.1469-7998.2006.00270.xopenalex-snapshot
No barriers to fertilization between sympatric colour morphs in the marine species flock Hypoplectrus (Serranidae)
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05657.xopenalex-snapshot
ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
inferredcites →https://doi.org/10.1111/j.1558-5646.2007.00285.xopenalex-snapshot
EXTRAORDINARY AFLP FINGERPRINT SIMILARITY DESPITE STRONG ASSORTATIVE MATING BETWEEN REEF FISH COLOR MORPHOSPECIES
inferredcites →https://doi.org/10.1111/mec.12926openalex-snapshot
Genomic atolls of differentiation in coral reef fishes ( H ypoplectrusspp.,Serranidae)
inferredcites →https://doi.org/10.1111/mec.13353openalex-snapshot
Transcriptomics of colour patterning and coloration shifts in crows
inferredcites →https://doi.org/10.1111/mec.13827openalex-snapshot
Region‐wide and ecotype‐specific differences in demographic histories of threespine stickleback populations, estimated from whole genome sequences
inferredcites →https://doi.org/10.1111/mec.15110openalex-snapshot
The evolution of microendemism in a reef fish (Hypoplectrus maya)
inferredcites →https://doi.org/10.1126/sciadv.1602404openalex-snapshot
Repeated divergent selection on pigmentation genes in a rapid finch radiation
inferredcites →https://doi.org/10.1126/science.1255641openalex-snapshot
Marine defaunation: Animal loss in the global ocean
inferredcites →https://doi.org/10.1126/science.aaw2090openalex-snapshot
Genomic architecture and introgression shape a butterfly radiation
inferredcites →https://doi.org/10.1186/2041-9139-2-9openalex-snapshot
Involvement of the conserved Hox gene Antennapedia in the development and evolution of a novel trait
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1214/aos/1013699998openalex-snapshot
The control of the false discovery rate in multiple testing under dependency
inferredcites →https://doi.org/10.1371/journal.pbio.0030285openalex-snapshot
Genomic Islands of Speciation in Anopheles gambiae
inferredcites →https://doi.org/10.1371/journal.pbio.3000391openalex-snapshot
Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers
inferredcites →https://doi.org/10.1371/journal.pbio.3000586openalex-snapshot
Dating genomic variants and shared ancestry in population-scale sequencing data
inferredcites →https://doi.org/10.1371/journal.pone.0020394openalex-snapshot
Searching for Speciation Genes: Molecular Evidence for Selection Associated with Colour Morphotypes in the Caribbean Reef Fish Genus Hypoplectrus
inferredcites →https://doi.org/10.1534/g3.116.028233openalex-snapshot
New Software for the Fast Estimation of Population Recombination Rates (FastEPRR) in the Genomic Era
inferredcites →https://doi.org/10.1534/genetics.112.145037openalex-snapshot
Ancient Admixture in Human History
inferredcites →https://doi.org/10.1534/genetics.116.194720openalex-snapshot
Exploring Evolutionary Relationships Across the Genome Using Topology Weighting
inferredcites →https://doi.org/10.1890/08-0859.1openalex-snapshot
Estimating dispersal from genetic isolation by distance in a coral reef fish (Hypoplectrus puella)
inferredcites →https://doi.org/10.2307/1444441openalex-snapshot
Speciation in the Hamlets (Hypoplectrus: Serranidae): A Continuing Enigma
inferredcites →https://doi.org/10.3354/meps07339openalex-snapshot
Stable isotope analysis of the Hypoplectrus species complex reveals no evidence for dietary niche divergence
inferredcites →https://doi.org/10.5061/dryad.fc71cp4openalex-snapshot
Data from: An inverse latitudinal gradient in speciation rate for marine fishes
inferredcites →https://doi.org/10.5281/zenodo.1012591openalex-snapshot
Hypoplectrus Floridae N. Sp. And Hypoplectrus Ecosur N. Sp., Two New Barred Hamlets From The Gulf Of Mexico (Pisces: Serranidae): More Than 3% Different In Coi Mtdna Sequence From The Caribbean Hypoplectrus Species Flock.
inferredcites →https://doi.org/10.5281/zenodo.4709766openalex-snapshot
k-hench/GenomicOriginsScripts: PNAS revisions
inferredcites →https://doi.org/10.5281/zenodo.4709889openalex-snapshot
k-hench/hamlet_radiation: PNAS publication
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/zootaxa.5093.2.1zenodo-depositor-declared
A review of 263 years of taxonomic research on Hypoplectrus (Perciformes: Serranidae), with a redescription of Hypoplectrus affinis (Poey, 1861)
inferred← citeshttps://doi.org/10.11646/zootaxa.5618.4.3zenodo-depositor-declared
Hypoplectrus espinosai sp. nov. (Teleostei: Serranidae), a new hamlet on coral reefs in the southwestern Gulf of Mexico
inferred← citeshttps://doi.org/10.3897/zookeys.1273.161858zenodo-depositor-declared
Integration of morphologic and genetic data clarifies the evolution and species boundaries within a Nychiodes Lederer, 1853 species complex (Lepidoptera, Geometridae)
inferred← citeshttps://doi.org/10.1002/ece3.10360openalex-snapshot
How we study cryptic species and their biological implications: A case study from marine shelled gastropods
inferred← citeshttps://doi.org/10.1002/edn3.70077openalex-snapshot
A Confidence Scoring Procedure for eDNA Metabarcoding Records and Its Application to a Global Marine Fish Dataset
inferred← citeshttps://doi.org/10.1016/j.celrep.2024.114745openalex-snapshot
Genomic insights into adaptive evolution of the species-rich cosmopolitan plant genus Rhododendron
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107616openalex-snapshot
Phylogenomics and body shape morphometrics reveal recent diversification in the goatfishes (Syngnatharia: Mullidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108140openalex-snapshot
A multiscale analysis of coralline algae Lithophylloideae (Corallinophycidae, Rhodophyta) shedding new light on understanding cryptic diversity
inferred← citeshttps://doi.org/10.1038/s41586-024-07263-wopenalex-snapshot
Hybrid speciation driven by multilocus introgression of ecological traits
inferred← citeshttps://doi.org/10.1038/s42003-024-06503-zopenalex-snapshot
Origin of the Laurentian Great Lakes fish fauna through upward adaptive radiation cascade prior to the Last Glacial Maximum
inferred← citeshttps://doi.org/10.1093/gbe/evaf031openalex-snapshot
Genomic Architecture of the Clownfish Hybrid Amphiprion leucokranos
inferred← citeshttps://doi.org/10.1093/ismeco/ycag121openalex-snapshot
Exploring phylosymbiosis in the skin microbiome of coral reef fish: synergistic effects of environmental and host-specific factors
inferred← citeshttps://doi.org/10.1098/rspb.2022.1576openalex-snapshot
Colour patterns influence symbiosis and competition in the anemonefish–host anemone symbiosis system
inferred← citeshttps://doi.org/10.1101/2023.10.19.563036openalex-snapshot
Gene flow throughout the evolutionary history of a polymorphic and generalist clownfish
inferred← citeshttps://doi.org/10.1101/2024.03.10.584293openalex-snapshot
Ongoing hybridisation among clownfishes: the genomic architecture of the Kimbe Bay hybrid zone
inferred← citeshttps://doi.org/10.1101/2025.07.01.662686openalex-snapshot
Proteobacteria with chemosynthetic potential are highly enriched in the gills of Hypoplectrus reef fishes
inferred← citeshttps://doi.org/10.1111/mec.17047openalex-snapshot
Phenotypic and genomic dissection of colour pattern variation in a reef fish radiation
inferred← citeshttps://doi.org/10.1111/mec.17436openalex-snapshot
Gene flow throughout the evolutionary history of a colour polymorphic and generalist clownfish
inferred← citeshttps://doi.org/10.1111/mec.17732openalex-snapshot
Genomic Landscape of Divergence in Ballan Wrasse ( Labrus bergylta )
inferred← citeshttps://doi.org/10.1111/mec.17748openalex-snapshot
Differences in Colour Pattern, Behaviour and Gene Expression in the Brain Suggest Divergent Camouflage Strategies in Sympatric Reef Fish Species
inferred← citeshttps://doi.org/10.1111/mec.70569openalex-snapshot
Blocks of Identity by Descent Reveal the Dual Role Played by Reef Fish Larvae for Retention and Dispersal
inferred← citeshttps://doi.org/10.1126/sciadv.adt0973openalex-snapshot
Radiation with reproductive isolation in the near-absence of phylogenetic signal
inferred← citeshttps://doi.org/10.1146/annurev-genet-022123-102748openalex-snapshot
Coral Reef Population Genomics in an Age of Global Change
inferred← citeshttps://doi.org/10.1371/journal.pgen.1012266openalex-snapshot
Proteobacteria with chemosynthetic potential are highly prevalent in the gills of Hypoplectrus reef fishes
inferred← citeshttps://doi.org/10.3390/d15030384openalex-snapshot
Hybridization in the Fringed Orchids: An Analysis of Species Boundaries in the Face of Gene Flow
inferred← citeshttps://doi.org/10.3390/fishes11090494openalex-snapshot
Divergent Expression and Stress Responsiveness of mitfa and mitfb in Congjiang Golden-Backed Crucian Carp
inferred← citeshttps://doi.org/10.64898/2026.09.08.750153openalex-snapshot
Hyoid barbels as a key innovation triggering goatfish adaptive radiation
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