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Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways

https://doi.org/10.1074/mcp.m114.047183

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Dephosphorylation of photosystem II core proteins is light‐regulated in vivo.

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Prediction of post‐translational glycosylation and phosphorylation of proteins from the amino acid sequence

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Ser/Thr/Tyr phosphoproteome analysis of pathogenic and non‐pathogenic Pseudomonas species

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Identification of the Major Regulatory Phosphorylation Site in Sucrose-Phosphate Synthase

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StageTip-Based HAMMOC, an Efficient and Inexpensive Phosphopeptide Enrichment Method for Plant Shotgun Phosphoproteomics

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Circadian and light-regulated expression of nitrate reductase in Arabidopsis

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Nitrate-reductase expression is under the control of a circadian rhythm and is light inducible in Nicotiana tabacum leaves

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Sucrose-phosphate synthase is regulated via metabolites and protein phosphorylation in potato tubers, in a manner analogous to the enzyme in leaves

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Regulation of plant NR activity by reversible phosphorylation, 14-3-3 proteins and proteolysis

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Protein phosphorylation as a mechanism for regulation of spinach leaf sucrose-phosphate synthase activity

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The Circadian Clock of the Fly: A Neurogenetics Journey Through Time

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The Genetics of Circadian Rhythms in Neurospora

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The Genetics of Plant Clocks

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Environmentally modulated phosphorylation and dynamics of proteins in photosynthetic membranes

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ELF4 Regulates GIGANTEA Chromatin Access through Subnuclear Sequestration

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Circadian Orchestration of the Hepatic Proteome

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Proteomic Analysis Reveals the Role of Synaptic Vesicle Cycling in Sustaining the Suprachiasmatic Circadian Clock

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Temporal Repression of Core Circadian Genes Is Mediated through EARLY FLOWERING 3 in Arabidopsis

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Complexity in the Wiring and Regulation of Plant Circadian Networks

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A previously found thylakoid membrane protein of 14 kDa (TMP14) is a novel subunit of plant photosystem I and is designated PSI‐P

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Kinases and phosphatases in the mammalian circadian clock

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Quantitative Proteomics Reveals a Dynamic Interactome and Phase-Specific Phosphorylation in the Neurospora Circadian Clock

inferredcites →https://doi.org/10.1016/j.tplants.2010.05.011openalex-snapshot

Singlet oxygen signaling links photosynthesis to translation and plant growth

inferredcites →https://doi.org/10.1016/j.tplants.2012.06.008openalex-snapshot

Phosphorylation in the plant circadian system

inferredcites →https://doi.org/10.1016/j.tplants.2013.11.007openalex-snapshot

Wheels within wheels: the plant circadian system

inferredcites →https://doi.org/10.1016/s0014-5793(97)00698-4openalex-snapshot

Evidence for light‐dependent and light‐independent protein dephosphorylation in chloroplasts

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[9] TM4 Microarray Software Suite

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The acidic ribosomal P proteins

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The social network of a cell: Recent advances in interactome mapping

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Stop and Go Extraction Tips for Matrix-Assisted Laser Desorption/Ionization, Nanoelectrospray, and LC/MS Sample Pretreatment in Proteomics

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A Neutral Loss Activation Method for Improved Phosphopeptide Sequence Analysis by Quadrupole Ion Trap Mass Spectrometry

inferredcites →https://doi.org/10.1021/cr000230wopenalex-snapshot

Kinetic and Catalytic Mechanisms of Protein Kinases

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Auxin stimulates S6 ribosomal protein phosphorylation in maize thereby affecting protein synthesis regulation

inferredcites →https://doi.org/10.1038/emboj.2009.297openalex-snapshot

TOC1 functions as a molecular switch connecting the circadian clock with plant responses to drought

inferredcites →https://doi.org/10.1038/emboj.2010.76openalex-snapshot

PRR5 regulates phosphorylation, nuclear import and subnuclear localization of TOC1 in the Arabidopsis circadian clock

inferredcites →https://doi.org/10.1038/msb.2008.32openalex-snapshot

Large‐scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis

inferredcites →https://doi.org/10.1038/msb.2009.68openalex-snapshot

Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis

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The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana

inferredcites →https://doi.org/10.1038/nature04316openalex-snapshot

Structural mechanism of plant aquaporin gating

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The nitrate/proton antiporter AtCLCa mediates nitrate accumulation in plant vacuoles

inferredcites →https://doi.org/10.1038/nature06132openalex-snapshot

ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light

inferredcites →https://doi.org/10.1038/nature08599openalex-snapshot

In vitro reconstitution of an abscisic acid signalling pathway

inferredcites →https://doi.org/10.1038/nature10182openalex-snapshot

The ELF4–ELF3–LUX complex links the circadian clock to diurnal control of hypocotyl growth

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Integration of biological networks and gene expression data using Cytoscape

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Post-translational modifications regulate the ticking of the circadian clock

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Chloroplast DnaJ-like proteins 3 and 4 (CDJ3/4) from Chlamydomonas reinhardtii contain redox-active Fe–S clusters and interact with stromal HSP70B

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Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis

inferredcites →https://doi.org/10.1073/pnas.0400163101openalex-snapshot

CK2 phosphorylation of CCA1 is necessary for its circadian oscillator function in Arabidopsis

inferredcites →https://doi.org/10.1073/pnas.0503029102openalex-snapshot

LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms

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Precision proteomics: The case for high resolution and high mass accuracy

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Singlet oxygen-dependent translational control in the tigrina-d.12 mutant of barley

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Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

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Reconstitution of abscisic acid activation of SLAC1 anion channel by CPK6 and OST1 kinases and branched ABI1 PP2C phosphatase action

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Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver

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Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions

inferredcites →https://doi.org/10.1073/pnas.95.15.8660openalex-snapshot

Resonating circadian clocks enhance fitness in cyanobacteria

inferredcites →https://doi.org/10.1073/pnas.95.18.11020openalex-snapshot

Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein

inferredcites →https://doi.org/10.1073/pnas.95.5.2378openalex-snapshot

Evolutionary analyses of the 12-kDa acidic ribosomal P-proteins reveal a distinct protein of higher plant ribosomes

inferredcites →https://doi.org/10.1073/pnas.96.22.12362openalex-snapshot

The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis

inferredcites →https://doi.org/10.1074/jbc.m803471200openalex-snapshot

Post-translational Regulation of the Arabidopsis Circadian Clock through Selective Proteolysis and Phosphorylation of Pseudo-response Regulator Proteins

inferredcites →https://doi.org/10.1074/mcp.m300050-mcp200openalex-snapshot

Identification of Three Previously Unknown in Vivo Protein Phosphorylation Sites in Thylakoid Membranes of Arabidopsis thaliana

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Expression Clustering Reveals Detailed Co-expression Patterns of Functionally Related Proteins during B Cell Differentiation

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Analysis of the Arabidopsis Cytosolic Ribosome Proteome Provides Detailed Insights into Its Components and Their Post-translational Modification

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Trypsin Cleaves Exclusively C-terminal to Arginine and Lysine Residues

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Parts per Million Mass Accuracy on an Orbitrap Mass Spectrometer via Lock Mass Injection into a C-trap

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BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks

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Thioredoxin-regulated β-amylase (BAM1) triggers diurnal starch degradation in guard cells, and in mesophyll cells under osmotic stress

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Connections between circadian clocks and carbon metabolism reveal species-specific effects on growth control

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Light and the circadian clock mediate time-specific changes in sensitivity to UV-B stress under light/dark cycles

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STRING v9.1: protein-protein interaction networks, with increased coverage and integration

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Circadian Waves of Expression of the APRR1/TOC1 Family of Pseudo-Response Regulators in Arabidopsis thaliana : Insight into the Plant Circadian Clock

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ABA-Activated SnRK2 Protein Kinase is Required for Dehydration Stress Signaling in Arabidopsis

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Characterization of Circadian-Associated APRR3 Pseudo-Response Regulator Belonging to the APRR1/TOC1 Quintet in Arabidopsis thaliana

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Comparative Transcriptome of Diurnally Oscillating Genes and Hormone-Responsive Genes in Arabidopsis thaliana: Insight into Circadian Clock-Controlled Daily Responses to Common Ambient Stresses in Plants

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CLC-b-Mediated NOFormula/H+ Exchange Across the Tonoplast of Arabidopsis Vacuoles

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The Circadian Clock Modulates Water Dynamics and Aquaporin Expression in Arabidopsis Roots

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Shotguns in the Front Line: Phosphoproteomics in Plants

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Clock-associated genes in Arabidopsis : a family affair

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Deep sequencing the circadian and diurnal transcriptome ofDrosophilabrain

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The Diurnal Project: Diurnal and Circadian Expression Profiling, Model-based Pattern Matching, and Promoter Analysis

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Posttranslational Control of theNeurospora CircadianClock

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Posttranslational Photomodulation of Circadian Amplitude

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Role of Phosphorylation in the Mammalian Circadian Clock

inferredcites →https://doi.org/10.1104/pp.004374openalex-snapshot

Circadian Rhythms Confer a Higher Level of Fitness to Arabidopsis Plants

inferredcites →https://doi.org/10.1104/pp.013441openalex-snapshot

Phosphorylation of the D1 Photosystem II Reaction Center Protein Is Controlled by an Endogenous Circadian Rhythm

inferredcites →https://doi.org/10.1104/pp.021006openalex-snapshot

Enhancer Trapping Reveals Widespread Circadian Clock Transcriptional Control in Arabidopsis

inferredcites →https://doi.org/10.1104/pp.103.022749openalex-snapshot

Regulated Phosphorylation of 40S Ribosomal Protein S6 in Root Tips of Maize

inferredcites →https://doi.org/10.1104/pp.103.035873openalex-snapshot

Phytohormones Participate in an S6 Kinase Signal Transduction Pathway in Arabidopsis

inferredcites →https://doi.org/10.1104/pp.104.044347openalex-snapshot

Diurnal Changes in the Transcriptome Encoding Enzymes of Starch Metabolism Provide Evidence for Both Transcriptional and Posttranscriptional Regulation of Starch Metabolism in Arabidopsis Leaves

inferredcites →https://doi.org/10.1104/pp.107.096206openalex-snapshot

ELF4Is Required for Oscillatory Properties of the Circadian Clock

inferredcites →https://doi.org/10.1104/pp.107.1.225openalex-snapshot

Circadian Oscillation of Nitrate Reductase Activity in Gonyaulax polyedra Is Due to Changes in Cellular Protein Levels

inferredcites →https://doi.org/10.1104/pp.109.138677openalex-snapshot

Large-Scale Arabidopsis Phosphoproteome Profiling Reveals Novel Chloroplast Kinase Substrates and Phosphorylation Networks

inferredcites →https://doi.org/10.1104/pp.110.157347openalex-snapshot

Large-Scale Comparative Phosphoproteomics Identifies Conserved Phosphorylation Sites in Plants

inferredcites →https://doi.org/10.1104/pp.113.4.1167openalex-snapshot

Circadian Regulation of Sucrose Phosphate Synthase Activity in Tomato by Protein Phosphatase Activity

inferredcites →https://doi.org/10.1104/pp.114.3.947openalex-snapshot

Protein Phosphorylation as a Mechanism for Osmotic-Stress Activation of Sucrose-Phosphate Synthase in Spinach Leaves

inferredcites →https://doi.org/10.1104/pp.118.1.149openalex-snapshot

Chilling Delays Circadian Pattern of Sucrose Phosphate Synthase and Nitrate Reductase Activity in Tomato1

inferredcites →https://doi.org/10.1104/pp.73.4.989openalex-snapshot

Regulation of Spinach Leaf Sucrose Phosphate Synthase by Glucose-6-Phosphate, Inorganic Phosphate, and pH

inferredcites →https://doi.org/10.1104/pp.96.1.275openalex-snapshot

Differential Expression of the Two Arabidopsis Nitrate Reductase Genes

inferredcites →https://doi.org/10.1105/tpc.016808openalex-snapshot

The F-Box Protein ZEITLUPE Confers Dosage-Dependent Control on the Circadian Clock, Photomorphogenesis, and Flowering Time[W]

inferredcites →https://doi.org/10.1105/tpc.10.3.451openalex-snapshot

Water Transport Activity of the Plasma Membrane Aquaporin PM28A Is Regulated by Phosphorylation

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AREB1 Is a Transcription Activator of Novel ABRE-Dependent ABA Signaling That Enhances Drought Stress Tolerance in Arabidopsis

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FLOWERING LOCUS C Mediates Natural Variation in the High-Temperature Response of the Arabidopsis Circadian Clock

inferredcites →https://doi.org/10.1105/tpc.107.054775openalex-snapshot

PRR3 Is a Vascular Regulator of TOC1 Stability in theArabidopsisCircadian Clock

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The Arabidopsis Nitrate Transporter NRT1.7, Expressed in Phloem, Is Responsible for Source-to-Sink Remobilization of Nitrate

inferredcites →https://doi.org/10.1105/tpc.111.093807openalex-snapshot

EARLY FLOWERING4 Recruitment of EARLY FLOWERING3 in the Nucleus Sustains the Arabidopsis Circadian Clock

inferredcites →https://doi.org/10.1105/tpc.112.108456openalex-snapshot

Regulation of Arabidopsis Leaf Hydraulics Involves Light-Dependent Phosphorylation of Aquaporins in Veins

inferredcites →https://doi.org/10.1105/tpc.113.113118openalex-snapshot

Arabidopsis CURVATURE THYLAKOID1 Proteins Modify Thylakoid Architecture by Inducing Membrane Curvature

inferredcites →https://doi.org/10.1105/tpc.113.119842openalex-snapshot

Multiple Layers of Posttranslational Regulation Refine Circadian Clock Activity in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.114.125815openalex-snapshot

Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs

inferredcites →https://doi.org/10.1105/tpc.8.3.519openalex-snapshot

Identification in vitro of a post-translational regulatory site in the hinge 1 region of Arabidopsis nitrate reductase.

inferredcites →https://doi.org/10.1111/j.1365-313x.2004.02055.xopenalex-snapshot

ABA activates ADPR cyclase and cADPR induces a subset of ABA‐responsive genes in Arabidopsis

inferredcites →https://doi.org/10.1111/j.1365-313x.2005.02531.xopenalex-snapshot

ELF4 is a phytochrome‐regulated component of a negative‐feedback loop involving the central oscillator components CCA1 and LHY

inferredcites →https://doi.org/10.1111/j.1365-313x.2009.04054.xopenalex-snapshot

PYR/PYL/RCAR family members are major in‐vivo ABI1 protein phosphatase 2C‐interacting proteins in Arabidopsis

inferredcites →https://doi.org/10.1111/j.1399-3054.1984.tb05900.xopenalex-snapshot

Circadian rhythmicity of nitrate reductase activity in barley leaves

inferredcites →https://doi.org/10.1126/science.1082971openalex-snapshot

Enhanced Fitness Conferred by Naturally Occurring Variation in the Circadian Clock

inferredcites →https://doi.org/10.1126/science.1115581openalex-snapshot

Plant Circadian Clocks Increase Photosynthesis, Growth, Survival, and Competitive Advantage

inferredcites →https://doi.org/10.1126/science.1124619openalex-snapshot

Mass Spectrometry and Protein Analysis

inferredcites →https://doi.org/10.1126/science.1146757openalex-snapshot

The Arabidopsis Circadian Clock Incorporates a cADPR-Based Feedback Loop

inferredcites →https://doi.org/10.1126/science.1173041openalex-snapshot

Abscisic Acid Inhibits Type 2C Protein Phosphatases via the PYR/PYL Family of START Proteins

inferredcites →https://doi.org/10.1126/science.1226339openalex-snapshot

Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals

inferredcites →https://doi.org/10.1126/science.290.5499.2110openalex-snapshot

Orchestrated Transcription of Key Pathways in Arabidopsis by the Circadian Clock

inferredcites →https://doi.org/10.1146/annurev-arplant-042110-103741openalex-snapshot

Anion Channels/Transporters in Plants: From Molecular Bases to Regulatory Networks

inferredcites →https://doi.org/10.1146/annurev-biochem-060713-035644openalex-snapshot

Interactive Features of Proteins Composing Eukaryotic Circadian Clocks

inferredcites →https://doi.org/10.1146/annurev.genom.5.061903.175925openalex-snapshot

MAMMALIAN CIRCADIAN BIOLOGY: Elucidating Genome-Wide Levels of Temporal Organization

inferredcites →https://doi.org/10.1177/074873049701200302openalex-snapshot

Quantitative Analysis of Drosophila period Gene Transcription in Living Animals

inferredcites →https://doi.org/10.1186/gb-2008-9-8-r130openalex-snapshot

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development

inferredcites →https://doi.org/10.1186/gb-2009-10-2-r17openalex-snapshot

Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays

inferredcites →https://doi.org/10.1371/journal.pbio.0040327openalex-snapshot

CDPKs CPK6 and CPK3 Function in ABA Regulation of Guard Cell S-Type Anion- and Ca2+- Permeable Channels and Stomatal Closure

inferredcites →https://doi.org/10.1371/journal.pbio.1001442openalex-snapshot

Genome-Wide RNA Polymerase II Profiles and RNA Accumulation Reveal Kinetics of Transcription and Associated Epigenetic Changes During Diurnal Cycles

inferredcites →https://doi.org/10.1371/journal.pbio.1001455openalex-snapshot

The Circadian Clock Coordinates Ribosome Biogenesis

inferredcites →https://doi.org/10.1371/journal.pgen.1001201openalex-snapshot

The Functional Interplay between Protein Kinase CK2 and CCA1 Transcriptional Activity Is Essential for Clock Temperature Compensation in Arabidopsis

inferredcites →https://doi.org/10.1371/journal.pgen.1001350openalex-snapshot

REVEILLE8 and PSEUDO-REPONSE REGULATOR5 Form a Negative Feedback Loop within the Arabidopsis Circadian Clock

inferredcites →https://doi.org/10.1371/journal.pgen.1004047openalex-snapshot

In-Vivo Quantitative Proteomics Reveals a Key Contribution of Post-Transcriptional Mechanisms to the Circadian Regulation of Liver Metabolism

inferredcites →https://doi.org/10.1371/journal.pone.0003105openalex-snapshot

Systems Biology of the Clock in Neurospora crassa

inferredcites →https://doi.org/10.1371/journal.pone.0029307openalex-snapshot

Differential Phosphorylation of Ribosomal Proteins in Arabidopsis thaliana Plants during Day and Night

inferredcites →https://doi.org/10.2144/03342mt01openalex-snapshot

TM4: A Free, Open-Source System for Microarray Data Management and Analysis

inferredcites →https://doi.org/10.2307/3870329openalex-snapshot

Identification in vitro of a Post-Translational Regulatory Site in the Hinge 1 Region of Arabidopsis Nitrate Reductase

inferredcites →https://doi.org/10.2976/1.3218766openalex-snapshot

Integrating ELF4 into the circadian system through combined structural and functional studies

inferredcites →https://doi.org/10.4161/psb.18766openalex-snapshot

ELF3 recruitment to thePRR9promoter requires other Evening Complex members in the Arabidopsis circadian clock

inferredcites →https://doi.org/10.7554/elife.00011openalex-snapshot

Nascent-Seq reveals novel features of mouse circadian transcriptional regulation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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A Compensated Clock: Temperature and Nutritional Compensation Mechanisms Across Circadian Systems

inferred← citeshttps://doi.org/10.1002/pld3.566openalex-snapshot

A phosphorylation‐deficient ribosomal protein eS6 is largely functional in Arabidopsis thaliana , rescuing mutant defects from global translation and gene expression to photosynthesis and growth

inferred← citeshttps://doi.org/10.1002/pmic.201500351openalex-snapshot

A year (2014–2015) of plants in Proteomics journal. Progress in wet and dry methodologies, moving from protein catalogs, and the view of classic plant biochemists

inferred← citeshttps://doi.org/10.1002/wrna.1597openalex-snapshot

Translational gene regulation in plants: A green new deal

inferred← citeshttps://doi.org/10.1002/wsbm.1450openalex-snapshot

Circadian rhythms and proteomics: It's all about posttranslational modifications!

inferred← citeshttps://doi.org/10.1007/124_2022_64openalex-snapshot

Photorespiration and Improving Photosynthesis

inferred← citeshttps://doi.org/10.1007/978-1-0716-1370-2_12openalex-snapshot

Uncover the Nuclear Proteomic Landscape with Enriched Nuclei Followed by Label-Free Quantitative Mass Spectrometry

inferred← citeshttps://doi.org/10.1007/978-3-319-33705-0_7openalex-snapshot

The Current Status of Proteomic Studies in Somatic Embryogenesis

inferred← citeshttps://doi.org/10.1007/978-3-319-43589-3_17openalex-snapshot

Plant SnRK1 Kinases: Structure, Regulation, and Function

inferred← citeshttps://doi.org/10.1007/978-3-319-49395-4_4openalex-snapshot

Plant Aquaporin Posttranslational Regulation

inferred← citeshttps://doi.org/10.1007/978-3-319-95315-1_4openalex-snapshot

Interactions Between Circadian Rhythms, ROS and Redox

inferred← citeshttps://doi.org/10.1007/s00726-017-2501-7openalex-snapshot

Long photoperiod affects the maize transition from vegetative to reproductive stages: a proteomic comparison between photoperiod-sensitive inbred line and its recurrent parent

inferred← citeshttps://doi.org/10.1016/j.bpj.2020.09.025openalex-snapshot

Early Detection of Daylengths with a Feedforward Circuit Coregulated by Circadian and Diurnal Cycles

inferred← citeshttps://doi.org/10.1016/j.cub.2021.03.046openalex-snapshot

Layers of crosstalk between circadian regulation and environmental signalling in plants

inferred← citeshttps://doi.org/10.1016/j.envexpbot.2020.104367openalex-snapshot

Dynamic role of aquaporin transport system under drought stress in plants

inferred← citeshttps://doi.org/10.1016/j.jmb.2019.12.004openalex-snapshot

Proteomics in Circadian Biology

inferred← citeshttps://doi.org/10.1016/j.mcpro.2021.100063openalex-snapshot

Quantitative Proteomics and Phosphoproteomics Support a Role for Mut9-Like Kinases in Multiple Metabolic and Signaling Pathways in Arabidopsis

inferred← citeshttps://doi.org/10.1016/j.mcpro.2021.100172openalex-snapshot

The Circadian Clock Gene Circuit Controls Protein and Phosphoprotein Rhythms in Arabidopsis thaliana

inferred← citeshttps://doi.org/10.1016/j.molp.2025.01.014openalex-snapshot

NTRC mediates the coupling of chloroplast redox rhythm with nuclear circadian clock in plant cells

inferred← citeshttps://doi.org/10.1016/j.plantsci.2020.110786openalex-snapshot

Molecular and functional dissection of EARLY-FLOWERING 3 (ELF3) and ELF4 in Arabidopsis

inferred← citeshttps://doi.org/10.1016/j.plantsci.2023.111675openalex-snapshot

Substrate profiling of the Arabidopsis Ca2+-dependent protein kinase AtCPK4 and its Ricinus communis ortholog RcCDPK1

inferred← citeshttps://doi.org/10.1016/j.tplants.2025.07.013openalex-snapshot

Phosphorylation-regulated SEC14-GOLD PATELLIN lipid transfer proteins

inferred← citeshttps://doi.org/10.1021/acs.analchem.5b04123openalex-snapshot

Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling

inferred← citeshttps://doi.org/10.1021/acs.jproteome.6b00348openalex-snapshot

Up-to-Date Workflow for Plant (Phospho)proteomics Identifies Differential Drought-Responsive Phosphorylation Events in Maize Leaves

inferred← citeshttps://doi.org/10.1038/nsmb.3327openalex-snapshot

Molecular mechanisms at the core of the plant circadian oscillator

inferred← citeshttps://doi.org/10.1038/s41438-020-00440-8openalex-snapshot

Protein phosphorylation associated with drought priming-enhanced heat tolerance in a temperate grass species

inferred← citeshttps://doi.org/10.1038/s41477-021-00993-zopenalex-snapshot

Lipid flippases as key players in plant adaptation to their environment

inferred← citeshttps://doi.org/10.1038/s44323-025-00058-wopenalex-snapshot

Temperature compensation of the Arabidopsis circadian clock

inferred← citeshttps://doi.org/10.1042/bcj20190339openalex-snapshot

CBL–CIPK module-mediated phosphoregulation: facts and hypothesis

inferred← citeshttps://doi.org/10.1042/bst20190572openalex-snapshot

The intersection between circadian and heat-responsive regulatory networks controls plant responses to increasing temperatures

inferred← citeshttps://doi.org/10.1042/ebc20210071openalex-snapshot

Activation and turnover of the plant immune signaling kinase BIK1: a fine balance

inferred← citeshttps://doi.org/10.1073/pnas.1819971116openalex-snapshot

Phosphoproteomics of Arabidopsis Highly ABA-Induced1 identifies AT-Hook–Like10 phosphorylation required for stress growth regulation

inferred← citeshttps://doi.org/10.1074/mcp.m115.054064openalex-snapshot

Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry

inferred← citeshttps://doi.org/10.1080/15476286.2017.1391444openalex-snapshot

What makes ribosomes tick?

inferred← citeshttps://doi.org/10.1080/15592324.2019.1642037openalex-snapshot

Phosphorylation regulates the activity of INDETERMINATE-DOMAIN (IDD/BIRD) proteins in response to diverse environmental conditions

inferred← citeshttps://doi.org/10.1093/hr/uhad258openalex-snapshot

Multi-omics landscape to decrypt the distinct flavonoid biosynthesis of Scutellaria baicalensis across multiple tissues

inferred← citeshttps://doi.org/10.1093/jxb/erad290openalex-snapshot

A phospho-dawn of protein modification anticipates light onset in the picoeukaryoteOstreococcus tauri

inferred← citeshttps://doi.org/10.1093/jxb/eraf509openalex-snapshot

Novel effector proteins of the plant heteromeric acetyl-CoA carboxylase

inferred← citeshttps://doi.org/10.1093/pcp/pcag044openalex-snapshot

The circadian morning complex modulates abscisic acid signaling by transcriptionally repressing PYL4 , PYL5 , and PYL6 at dawn

inferred← citeshttps://doi.org/10.1093/pcp/pcz010openalex-snapshot

Algal Protein Kinase, Triacylglycerol Accumulation Regulator 1, Modulates Cell Viability and Gametogenesis in Carbon/Nitrogen-Imbalanced Conditions

inferred← citeshttps://doi.org/10.1093/pcp/pcz163openalex-snapshot

Comparative Phosphoproteomic Analysis Reveals a Decay of ABA Signaling in Barley Embryos during After-Ripening

inferred← citeshttps://doi.org/10.1093/plcell/koac049openalex-snapshot

Phosphorylation of MdERF17 by MdMPK4 promotes apple fruit peel degreening during light/dark transitions

inferred← citeshttps://doi.org/10.1093/plphys/kiab373openalex-snapshot

Hormonal and environmental signaling pathways target membrane water transport

inferred← citeshttps://doi.org/10.1093/plphys/kiac269openalex-snapshot

Multi-omic analysis showsREVEILLEclock genes are involved in carbohydrate metabolism and proteasome function

inferred← citeshttps://doi.org/10.1093/plphys/kiae254openalex-snapshot

40S Ribosomal protein S6 kinase integrates daylength perception and growth regulation in Arabidopsis thaliana

inferred← citeshttps://doi.org/10.1098/rsob.160333openalex-snapshot

Parallel analysis ofArabidopsiscircadian clock mutants reveals different scales of transcriptome and proteome regulation

inferred← citeshttps://doi.org/10.1098/rstb.2023.0346openalex-snapshot

Circadian gating: concepts, processes, and opportunities

inferred← citeshttps://doi.org/10.1101/2020.04.23.057711openalex-snapshot

Early detection of daylengths with a feedforward circuit coregulated by circadian and diurnal cycles

inferred← citeshttps://doi.org/10.1101/2020.05.15.098418openalex-snapshot

Loss of Photosynthetic RhythmThermal Plasticity Under Domestication and Repurposing Drivers of Circadian Clock (DOC) Loci for Adaptive Breeding in Barley

inferred← citeshttps://doi.org/10.1101/2021.06.27.450011openalex-snapshot

GTL1 is required for a robust root hair growth response to avoid nutrient overloading

inferred← citeshttps://doi.org/10.1101/2021.10.25.465654openalex-snapshot

Multi-omic analysis of the Arabidopsis clock activator mutant rve 4 6 8 reveals connections to carbohydrate metabolism and proteasome regulation

inferred← citeshttps://doi.org/10.1101/2025.07.31.667909openalex-snapshot

Temporal dynamics of RNA metabolic enzyme interactome lay the foundation for riboregulation mediated circadian metabolism

inferred← citeshttps://doi.org/10.1101/287862openalex-snapshot

Circadian protein regulation in the green lineage I. A phospho-dawn of protein modification anticipates light onset in the picoeukaryote O. tauri

inferred← citeshttps://doi.org/10.1101/413013openalex-snapshot

Phosphoproteomics of Arabidopsis Highly ABA-Induced1 identifies AT-Hook Like10 phosphorylation required for stress growth regulation

inferred← citeshttps://doi.org/10.1101/760892openalex-snapshot

The circadian clock gene circuit controls protein and phosphoprotein rhythms in Arabidopsis thaliana

inferred← citeshttps://doi.org/10.1104/pp.16.01738openalex-snapshot

EARLY FLOWERING3 Redundancy Fine-Tunes Photoperiod Sensitivity

inferred← citeshttps://doi.org/10.1105/tpc.18.00804openalex-snapshot

Oscillating Aquaporin Phosphorylation and 14-3-3 Proteins Mediate the Circadian Regulation of Leaf Hydraulics

inferred← citeshttps://doi.org/10.1111/jipb.13622openalex-snapshot

How plants sense and respond to osmotic stress

inferred← citeshttps://doi.org/10.1111/jnc.13960openalex-snapshot

Actin filament‐associated protein 1 (AFAP‐1) is a key mediator in inflammatory signaling‐induced rapid attenuation of intrinsic P‐gp function in human brain capillary endothelial cells

inferred← citeshttps://doi.org/10.1111/nph.15473openalex-snapshot

ABA signalling is regulated by the circadian clock component LHY

inferred← citeshttps://doi.org/10.1111/nph.16507openalex-snapshot

Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation

inferred← citeshttps://doi.org/10.1111/nph.18255openalex-snapshot

Trihelix transcription factors GTL1 and DF1 prevent aberrant root hair formation in an excess nutrient condition

inferred← citeshttps://doi.org/10.1111/pce.13346openalex-snapshot

New connections between circadian rhythms, photosynthesis, and environmental adaptation

inferred← citeshttps://doi.org/10.1111/pce.13969openalex-snapshot

Diurnal dynamics of the Arabidopsis rosette proteome and phosphoproteome

inferred← citeshttps://doi.org/10.1111/ppl.70726openalex-snapshot

Dual Phosphorylation of Thr175 and Ser176 Is Essential for SnRK1α1 Activation

inferred← citeshttps://doi.org/10.1111/tpj.14315openalex-snapshot

Diurnal changes in concerted plant protein phosphorylation and acetylation in Arabidopsis organs and seedlings

inferred← citeshttps://doi.org/10.1111/tpj.15254openalex-snapshot

Closing the protein gap in plant chronobiology

inferred← citeshttps://doi.org/10.1111/tpj.15395openalex-snapshot

Arabidopsis thaliana 2,3‐bisphosphoglycerate‐independent phosphoglycerate mutase 2 activity requires serine 82 phosphorylation

inferred← citeshttps://doi.org/10.1111/tpj.16240openalex-snapshot

Regulation of plant carbon assimilation metabolism by post‐translational modifications

inferred← citeshttps://doi.org/10.1111/tpj.16405openalex-snapshot

Circadian regulation of metabolism across photosynthetic organisms

inferred← citeshttps://doi.org/10.1111/tpj.16406openalex-snapshot

The interplay of post‐translational protein modifications in Arabidopsis leaves during photosynthesis induction

inferred← citeshttps://doi.org/10.1111/tpj.70275openalex-snapshot

The time machine: feedback loops, post‐transcriptional regulation, and environmental integration in the plant circadian oscillator

inferred← citeshttps://doi.org/10.1146/annurev-arplant-071720-104814openalex-snapshot

Engineering of Crassulacean Acid Metabolism

inferred← citeshttps://doi.org/10.11606/t.46.2018.tde-19072018-113726openalex-snapshot

Vias de sinalização por auxinas e sua interação com o relógio biológico de cana-de-açúcar

inferred← citeshttps://doi.org/10.1177/0748730417737633openalex-snapshot

Sumoylation Contributes to Timekeeping and Temperature Compensation of the Plant Circadian Clock

inferred← citeshttps://doi.org/10.1371/journal.pgen.1007037openalex-snapshot

The GYF domain protein PSIG1 dampens the induction of cell death during plant-pathogen interactions

inferred← citeshttps://doi.org/10.1371/journal.pgen.1007708openalex-snapshot

The Trihelix transcription factor GT2-like 1 (GTL1) promotes salicylic acid metabolism, and regulates bacterial-triggered immunity

inferred← citeshttps://doi.org/10.1371/journal.pgen.1010947openalex-snapshot

Genome-wide circadian gating of a cold temperature response in bread wheat

inferred← citeshttps://doi.org/10.18632/oncotarget.7065openalex-snapshot

Evolving roles of circadian rhythms in liver homeostasis and pathology

inferred← citeshttps://doi.org/10.2139/ssrn.7507384openalex-snapshot

Phosphorylation of ELF4 by SOS2 protein kinase releases ELF3 to confer salt tolerance in Arabidopsis

inferred← citeshttps://doi.org/10.3389/fmicb.2022.1004074openalex-snapshot

The enigmatic clock of dinoflagellates, is it unique?

inferred← citeshttps://doi.org/10.3389/fpls.2016.00752openalex-snapshot

Comparative Proteomic Analysis of the Response of Maize (Zea mays L.) Leaves to Long Photoperiod Condition

inferred← citeshttps://doi.org/10.3389/fpls.2016.01007openalex-snapshot

Circadian Profiling of the Arabidopsis Proteome Using 2D-DIGE

inferred← citeshttps://doi.org/10.3389/fpls.2017.02210openalex-snapshot

Phosphorylation of Ribosomal Protein RPS6 Integrates Light Signals and Circadian Clock Signals

inferred← citeshttps://doi.org/10.3389/fpls.2019.00667openalex-snapshot

Luciferase-Based Screen for Post-translational Control Factors in the Regulation of the Pseudo-Response Regulator PRR7

inferred← citeshttps://doi.org/10.3389/fpls.2020.00377openalex-snapshot

Protein Phosphorylation Dynamics Under Carbon/Nitrogen-Nutrient Stress and Identification of a Cell Death-Related Receptor-Like Kinase in Arabidopsis

inferred← citeshttps://doi.org/10.3389/fpls.2020.618835openalex-snapshot

Signaling Toward Reactive Oxygen Species-Scavenging Enzymes in Plants

inferred← citeshttps://doi.org/10.3390/biology8010014openalex-snapshot

The Plant Circadian Oscillator

inferred← citeshttps://doi.org/10.3390/genes12030325openalex-snapshot

Post-Translational Mechanisms of Plant Circadian Regulation

inferred← citeshttps://doi.org/10.3390/genes9120567openalex-snapshot

A Functional Connection between the Circadian Clock and Hormonal Timing in Arabidopsis

inferred← citeshttps://doi.org/10.3390/ijms20020451openalex-snapshot

Comparative Phosphoproteomic Analysis of Barley Embryos with Different Dormancy during Imbibition

inferred← citeshttps://doi.org/10.3390/ijms21228631openalex-snapshot

Large-Scale Phosphoproteomic Study of Arabidopsis Membrane Proteins Reveals Early Signaling Events in Response to Cold

inferred← citeshttps://doi.org/10.3390/ijms232214134openalex-snapshot

Phytochromes and Their Role in Diurnal Variations of ROS Metabolism and Plant Proteome

inferred← citeshttps://doi.org/10.3390/ijms241713307openalex-snapshot

The Case for the Target of Rapamycin Pathway as a Candidate Circadian Oscillator

inferred← citeshttps://doi.org/10.3390/plants10102053openalex-snapshot

The Arabidopsis Rho of Plants GTPase ROP1 Is a Potential Calcium-Dependent Protein Kinase (CDPK) Substrate

inferred← citeshttps://doi.org/10.3390/plants9010027openalex-snapshot

Enzymatic Properties of Recombinant Phospho-Mimetic Photorespiratory Glycolate Oxidases from Arabidopsis thaliana and Zea mays

inferred← citeshttps://doi.org/10.3390/stresses2010006openalex-snapshot

Abscisic Acid Machinery Is under Circadian Clock Regulation at Multiple Levels

inferred← citeshttps://doi.org/10.3791/54586openalex-snapshot

Rapid Analysis of Circadian Phenotypes in Arabidopsis Protoplasts Transfected with a Luminescent Clock Reporter

inferred← citeshttps://doi.org/10.64898/2025.12.19.695194openalex-snapshot

The plant circadian clock exerts stronger control over the diel proteome than the transcriptome

inferred← citeshttps://doi.org/10.64898/2026.06.05.730517openalex-snapshot

A co-proteomic view of metabolite-specific interactions in the Botrytis cinerea-Arabidopsis pathosystem

inferred← citeshttps://doi.org/10.70675/6f8b480az9ff0z4ac7z86bcz1635252eca60openalex-snapshot

Phosphoregulation of photorespiratory enzymes in Arabidopsis thaliana

inferred← citeshttps://doi.org/10.70675/a48a46ddze462z471dz9db1zbc87a8c51c41openalex-snapshot

Anchoring mechanism of the plant protein remorin to membrane nanodomains

inferred← citeshttps://doi.org/10.7554/elife.58993openalex-snapshot

Expansion of the circadian transcriptome in Brassica rapa and genome-wide diversification of paralog expression patterns

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