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The circadian clock gene circuit controls protein and phosphoprotein rhythms in Arabidopsis thaliana

https://doi.org/10.1101/760892
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-60761-444-9_5openalex-snapshot
Target-Decoy Search Strategy for Mass Spectrometry-Based Proteomics
inferredcites →https://doi.org/10.1007/978-3-030-48733-1_10openalex-snapshot
Phosphatases: The Critical Regulator of Abiotic Stress Tolerance in Plants
inferredcites →https://doi.org/10.1007/bf00041155openalex-snapshot
Comparison of different constitutive and inducible promoters for the overexpression of transgenes in Arabidopsis thaliana
inferredcites →https://doi.org/10.1007/s11103-016-0542-zopenalex-snapshot
Salinity-mediated transcriptional and post-translational regulation of the Arabidopsis aquaporin PIP2;7
inferredcites →https://doi.org/10.1016/j.bbrc.2012.05.064openalex-snapshot
AtPP2CG1, a protein phosphatase 2C, positively regulates salt tolerance of Arabidopsis in abscisic acid-dependent manner
inferredcites →https://doi.org/10.1016/j.celrep.2014.09.021openalex-snapshot
Rhythmic Degradation Explains and Unifies Circadian Transcriptome and Proteome Data
inferredcites →https://doi.org/10.1016/j.cmet.2016.10.004openalex-snapshot
Phosphorylation Is a Central Mechanism for Circadian Control of Metabolism and Physiology
inferredcites →https://doi.org/10.1016/j.cmet.2020.01.015openalex-snapshot
AMPK and TOR: The Yin and Yang of Cellular Nutrient Sensing and Growth Control
inferredcites →https://doi.org/10.1016/j.cub.2006.04.026openalex-snapshot
Circadian Orchestration of the Hepatic Proteome
inferredcites →https://doi.org/10.1016/j.cub.2018.05.092openalex-snapshot
Circadian Entrainment in Arabidopsis by the Sugar-Responsive Transcription Factor bZIP63
inferredcites →https://doi.org/10.1016/j.molp.2015.12.013openalex-snapshot
Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo -Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1
inferredcites →https://doi.org/10.1016/j.tibs.2012.07.006openalex-snapshot
Non-transcriptional oscillators in circadian timekeeping
inferredcites →https://doi.org/10.1016/j.tplants.2004.09.004openalex-snapshot
Fructose-2,6-bisphosphate: a traffic signal in plant metabolism
inferredcites →https://doi.org/10.1016/j.tplants.2012.06.008openalex-snapshot
Phosphorylation in the plant circadian system
inferredcites →https://doi.org/10.1016/s0092-8674(00)81464-6openalex-snapshot
Constitutive Expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) Gene Disrupts Circadian Rhythms and Suppresses Its Own Expression
inferredcites →https://doi.org/10.1016/s0092-8674(01)00383-xopenalex-snapshot
A Role for the Segment Polarity Gene shaggy/GSK-3 in the Drosophila Circadian Clock
inferredcites →https://doi.org/10.1016/s0960-9822(03)00042-3openalex-snapshot
POLTERGEIST Encodes a Protein Phosphatase 2C that Regulates CLAVATA Pathways Controlling Stem Cell Identity at Arabidopsis Shoot and Flower Meristems
inferredcites →https://doi.org/10.1038/msb.2012.6openalex-snapshot
The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops
inferredcites →https://doi.org/10.1038/nature09654openalex-snapshot
Circadian rhythms persist without transcription in a eukaryote
inferredcites →https://doi.org/10.1038/nature09702openalex-snapshot
Circadian clocks in human red blood cells
inferredcites →https://doi.org/10.1038/nature11088openalex-snapshot
Peroxiredoxins are conserved markers of circadian rhythms
inferredcites →https://doi.org/10.1038/nature17407openalex-snapshot
Daily magnesium fluxes regulate cellular timekeeping and energy balance
inferredcites →https://doi.org/10.1038/nbt.2839openalex-snapshot
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
inferredcites →https://doi.org/10.1038/nrg.2016.150openalex-snapshot
Transcriptional architecture of the mammalian circadian clock
inferredcites →https://doi.org/10.1038/s41467-017-02161-4openalex-snapshot
Rhythmic potassium transport regulates the circadian clock in human red blood cells
inferredcites →https://doi.org/10.1038/srep31697openalex-snapshot
Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation
inferredcites →https://doi.org/10.1039/c0ib00078gopenalex-snapshot
pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes inArabidopsis thaliana
inferredcites →https://doi.org/10.1042/0264-6021:3590591openalex-snapshot
N-terminal truncation affects the kinetics and structure of fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase from Arabidopsis thaliana
inferredcites →https://doi.org/10.1073/pnas.0400163101openalex-snapshot
CK2 phosphorylation of CCA1 is necessary for its circadian oscillator function in Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.0403906101openalex-snapshot
Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942
inferredcites →https://doi.org/10.1073/pnas.0914299107openalex-snapshot
Circadian control of carbohydrate availability for growth in Arabidopsis plants at night
inferredcites →https://doi.org/10.1073/pnas.1007879107openalex-snapshot
In planta changes in protein phosphorylation induced by the plant hormone abscisic acid
inferredcites →https://doi.org/10.1073/pnas.1132112100openalex-snapshot
Toward a detailed computational model for the mammalian circadian clock
inferredcites →https://doi.org/10.1073/pnas.1314066111openalex-snapshot
Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver
inferredcites →https://doi.org/10.1073/pnas.96.22.12362openalex-snapshot
The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis
inferredcites →https://doi.org/10.1074/jbc.m503526200openalex-snapshot
A Role for Glycogen Synthase Kinase-3β in the Mammalian Circadian Clock
inferredcites →https://doi.org/10.1074/jbc.ra118.002073openalex-snapshot
The FCS-like zinc finger scaffold of the kinase SnRK1 is formed by the coordinated actions of the FLZ domain and intrinsically disordered regions
inferredcites →https://doi.org/10.1074/mcp.m114.047183openalex-snapshot
Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways
inferredcites →https://doi.org/10.1080/15592324.2017.1411448openalex-snapshot
AKIN10 activity as a cellular link between metabolism and circadian-clock entrainment inArabidopsis thaliana
inferredcites →https://doi.org/10.1093/bioinformatics/btl140openalex-snapshot
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
inferredcites →https://doi.org/10.1093/biostatistics/kxj037openalex-snapshot
Adjusting batch effects in microarray expression data using empirical Bayes methods
inferredcites →https://doi.org/10.1093/jxb/erw107openalex-snapshot
Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence
inferredcites →https://doi.org/10.1093/nar/gkt1121openalex-snapshot
EKPD: a hierarchical database of eukaryotic protein kinases and protein phosphatases
inferredcites →https://doi.org/10.1101/047100openalex-snapshot
qpMerge: Merging different peptide isoforms using a motif centric strategy
inferredcites →https://doi.org/10.1101/287862openalex-snapshot
Circadian protein regulation in the green lineage I. A phospho-dawn of protein modification anticipates light onset in the picoeukaryote O. tauri
inferredcites →https://doi.org/10.1101/gad.14.6.645openalex-snapshot
Involvement of the MAP kinase cascade in resetting of the mammalian circadian clock
inferredcites →https://doi.org/10.1101/gad.512209openalex-snapshot
A large-scale functional RNAi screen reveals a role for CK2 in the mammalian circadian clock
inferredcites →https://doi.org/10.1104/pp.102.011999openalex-snapshot
The Arabidopsis CDPK-SnRK Superfamily of Protein Kinases
inferredcites →https://doi.org/10.1104/pp.103.033126openalex-snapshot
Correlation of ASN2 Gene Expression with Ammonium Metabolism in Arabidopsis
inferredcites →https://doi.org/10.1104/pp.104.044347openalex-snapshot
Diurnal Changes in the Transcriptome Encoding Enzymes of Starch Metabolism Provide Evidence for Both Transcriptional and Posttranscriptional Regulation of Starch Metabolism in Arabidopsis Leaves
inferredcites →https://doi.org/10.1104/pp.120.1.257openalex-snapshot
Two SNF1-Related Protein Kinases from Spinach Leaf Phosphorylate and Inactivate 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase, Nitrate Reductase, and Sucrose Phosphate Synthase in Vitro1
inferredcites →https://doi.org/10.1104/pp.19.00818openalex-snapshot
SnRK2 Protein Kinases and mRNA Decapping Machinery Control Root Development and Response to Salt
inferredcites →https://doi.org/10.1104/pp.83.2.283openalex-snapshot
Diurnal Changes in Maize Leaf Photosynthesis
inferredcites →https://doi.org/10.1105/tpc.105.035261openalex-snapshot
Sugars and Circadian Regulation Make Major Contributions to the Global Regulation of Diurnal Gene Expression in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.105.038315openalex-snapshot
FLOWERING LOCUS C Mediates Natural Variation in the High-Temperature Response of the Arabidopsis Circadian Clock
inferredcites →https://doi.org/10.1105/tpc.109.071779openalex-snapshot
The Arabidopsis thaliana Myo- Inositol 1-Phosphate Synthase1 Gene Is Required for Myo -inositol Synthesis and Suppression of Cell Death
inferredcites →https://doi.org/10.1105/tpc.18.00804openalex-snapshot
Oscillating Aquaporin Phosphorylation and 14-3-3 Proteins Mediate the Circadian Regulation of Leaf Hydraulics
inferredcites →https://doi.org/10.1111/j.1365-313x.2003.01992.xopenalex-snapshot
Phosphorylation and 14‐3‐3 binding of Arabidopsis 6‐phosphofructo‐2‐kinase/fructose‐2,6‐bisphosphatase
inferredcites →https://doi.org/10.1111/j.1432-1033.1982.tb07039.xopenalex-snapshot
A Kinetic Study of Pyrophosphate: Fructose‐6‐Phosphate Phosphotransferase from Potato Tubers
inferredcites →https://doi.org/10.1111/j.1574-6976.2011.00288.xopenalex-snapshot
The circadian clock ofNeurospora crassa
inferredcites →https://doi.org/10.1111/pce.12903openalex-snapshot
The metabolic sensor AKIN10 modulates the Arabidopsis circadian clock in a light‐dependent manner
inferredcites →https://doi.org/10.1111/pce.13969openalex-snapshot
Diurnal dynamics of the Arabidopsis rosette proteome and phosphoproteome
inferredcites →https://doi.org/10.1111/tpj.12765openalex-snapshot
Lack of fructose 2,6‐bisphosphate compromises photosynthesis and growth in Arabidopsis in fluctuating environments
inferredcites →https://doi.org/10.1111/tpj.14315openalex-snapshot
Diurnal changes in concerted plant protein phosphorylation and acetylation in Arabidopsis organs and seedlings
inferredcites →https://doi.org/10.1126/science.1108451openalex-snapshot
Reconstitution of Circadian Oscillation of Cyanobacterial KaiC Phosphorylation in Vitro
inferredcites →https://doi.org/10.1126/science.1213351openalex-snapshot
Sucrose Efflux Mediated by SWEET Proteins as a Key Step for Phloem Transport
inferredcites →https://doi.org/10.1128/mcb.23.17.6221-6228.2003openalex-snapshot
Phosphorylation of FREQUENCY Protein by Casein Kinase II Is Necessary for the Function of the Neurospora Circadian Clock
inferredcites →https://doi.org/10.1177/0748730410379711openalex-snapshot
JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets
inferredcites →https://doi.org/10.1177/0748730415573167openalex-snapshot
Circadian Rhythmicity of Active GSK3 Isoforms Modulates Molecular Clock Gene Rhythms in the Suprachiasmatic Nucleus
inferredcites →https://doi.org/10.1186/gb-2008-9-8-r130openalex-snapshot
Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development
inferredcites →https://doi.org/10.1242/dev.00909openalex-snapshot
VARICOSE, a WD-domain protein, is required for leaf blade development
inferredcites →https://doi.org/10.1371/journal.pbio.0050222openalex-snapshot
The Circadian Clock Regulates Auxin Signaling and Responses in Arabidopsis
inferredcites →https://doi.org/10.1371/journal.pcbi.1003705openalex-snapshot
Rethinking Transcriptional Activation in the Arabidopsis Circadian Clock
inferredcites →https://doi.org/10.1371/journal.pgen.1004047openalex-snapshot
In-Vivo Quantitative Proteomics Reveals a Key Contribution of Post-Transcriptional Mechanisms to the Circadian Regulation of Liver Metabolism
inferredcites →https://doi.org/10.3389/fpls.2011.00098openalex-snapshot
Evidence for a DNA-Based Mechanism of Intron-Mediated Enhancement
inferredcites →https://doi.org/10.3389/fpls.2014.00054openalex-snapshot
The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants
inferredcites →https://doi.org/10.3389/fpls.2015.00385openalex-snapshot
Synergisms between microbial pathogens in plant disease complexes: a growing trend
inferredcites →https://doi.org/10.3389/fpls.2016.01509openalex-snapshot
GOLDEN 2-LIKE Transcription Factors of Plants

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.cub.2021.03.046openalex-snapshot
Layers of crosstalk between circadian regulation and environmental signalling in plants
inferred← citeshttps://doi.org/10.1016/j.pbi.2021.102133openalex-snapshot
Circadian coordination of cellular processes and abiotic stress responses
inferred← citeshttps://doi.org/10.1093/plcell/koab113openalex-snapshot
Time of the day prioritizes the pool of translating mRNAs in response to heat stress
inferred← citeshttps://doi.org/10.1111/pce.13969openalex-snapshot
Diurnal dynamics of the Arabidopsis rosette proteome and phosphoproteome
inferred← citeshttps://doi.org/10.1111/tpj.15254openalex-snapshot
Closing the protein gap in plant chronobiology
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1010399openalex-snapshot
Rhythmicity is linked to expression cost at the protein level but to expression precision at the mRNA level
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