On the public citation graph

Ancient reticulation, incomplete lineage sorting and the evolution of the pyrenoid at the dawn of hornwort diversification

0 signed · 114 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ajb2.1064openalex-snapshot

A matter of phylogenetic scale: Distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification histories

inferredcites →https://doi.org/10.1002/ajb2.1397openalex-snapshot

Organellomic data sets confirm a cryptic consensus on (unrooted) land‐plant relationships and provide new insights into bryophyte molecular evolution

inferredcites →https://doi.org/10.1002/ajb2.16249openalex-snapshot

Comprehensive phylogenomic time tree of bryophytes reveals deep relationships and uncovers gene incongruences in the last 500 million years of diversification

inferredcites →https://doi.org/10.1002/ajb2.1702openalex-snapshot

Hundreds of nuclear and plastid loci yield novel insights into orchid relationships

inferredcites →https://doi.org/10.1002/aps3.11406openalex-snapshot

A target enrichment probe set for resolving the flagellate land plant tree of life

inferredcites →https://doi.org/10.1002/j.1537-2197.1987.tb12142.xopenalex-snapshot

MIOCENE COMMUNITIES AND PALEOENVIRONMENTS OF SOUTHERN COSTA RICA

inferredcites →https://doi.org/10.1007/978-3-030-33397-3_9openalex-snapshot

The Algal Pyrenoid

inferredcites →https://doi.org/10.1007/bf02100115openalex-snapshot

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

inferredcites →https://doi.org/10.1007/bf02109483openalex-snapshot

Maximum likelihood inference of protein phylogeny and the origin of chloroplasts

inferredcites →https://doi.org/10.1007/s11120-005-8388-2openalex-snapshot

Land plants equilibrate O2 and CO2 concentrations in the atmosphere

inferredcites →https://doi.org/10.1016/j.cub.2021.07.038openalex-snapshot

The evolutionary emergence of land plants

inferredcites →https://doi.org/10.1016/j.gloplacha.2014.07.014openalex-snapshot

The global vegetation pattern across the Cretaceous–Paleogene mass extinction interval: A template for other extinction events

inferredcites →https://doi.org/10.1016/j.gr.2013.08.021openalex-snapshot

Early Jurassic (late Pliensbachian) CO2 concentrations based on stomatal analysis of fossil conifer leaves from eastern Australia

inferredcites →https://doi.org/10.1016/j.revpalbo.2012.08.009openalex-snapshot

New fossil bryophytes from the Triassic Madygen Lagerstätte (SW Kyrgyzstan)

inferredcites →https://doi.org/10.1016/j.tplants.2017.02.002openalex-snapshot

Hornworts: An Overlooked Window into Carbon-Concentrating Mechanisms

inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot

Gene tree discordance, phylogenetic inference and the multispecies coalescent

inferredcites →https://doi.org/10.1016/j.ympev.2014.04.014openalex-snapshot

A review of molecular-clock calibrations and substitution rates in liverworts, mosses, and hornworts, and a timeframe for a taxonomically cleaned-up genus Nothoceros

inferredcites →https://doi.org/10.1016/j.ympev.2022.107543openalex-snapshot

Interpreting phylogenetic conflict: Hybridization in the most speciose genus of lichen-forming fungi

inferredcites →https://doi.org/10.1016/j.ympev.2022.107606openalex-snapshot

Phylogeny and evolution of Cupressaceae: Updates on intergeneric relationships and new insights on ancient intergeneric hybridization

inferredcites →https://doi.org/10.1016/j.ympev.2023.107787openalex-snapshot

Genomics reveals broad hybridization in deeply divergent Palearctic grass and water snakes (Natrix spp.)

inferredcites →https://doi.org/10.1038/ncomms6134openalex-snapshot

Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts

inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot

ModelFinder: fast model selection for accurate phylogenetic estimates

inferredcites →https://doi.org/10.1038/s41467-018-04025-xopenalex-snapshot

Gene refashioning through innovative shifting of reading frames in mosses

inferredcites →https://doi.org/10.1038/s41467-018-07849-9openalex-snapshot

Contemporaneous radiations of fungi and plants linked to symbiosis

inferredcites →https://doi.org/10.1038/s41467-020-17116-5openalex-snapshot

Recent accelerated diversification in rosids occurred outside the tropics

inferredcites →https://doi.org/10.1038/s41477-024-01871-0openalex-snapshot

Hornworts reveal a spatial model for pyrenoid-based CO2-concentrating mechanisms in land plants

inferredcites →https://doi.org/10.1038/s41559-018-0777-yopenalex-snapshot

Insights from genomes into the evolutionary importance and prevalence of hybridization in nature

inferredcites →https://doi.org/10.1038/s41559-020-1241-3openalex-snapshot

The delayed and geographically heterogeneous diversification of flowering plant families

inferredcites →https://doi.org/10.1038/s41559-022-01885-xopenalex-snapshot

Divergent evolutionary trajectories of bryophytes and tracheophytes from a complex common ancestor of land plants

inferredcites →https://doi.org/10.1038/s41586-019-1693-2openalex-snapshot

One thousand plant transcriptomes and the phylogenomics of green plants

inferredcites →https://doi.org/10.1038/srep05974openalex-snapshot

Epiphytic leafy liverworts diversified in angiosperm-dominated forests

inferredcites →https://doi.org/10.1071/pp01213openalex-snapshot

Evolution and diversity of CO 2 concentrating mechanisms in cyanobacteria

inferredcites →https://doi.org/10.1073/pnas.0334222100openalex-snapshot

Placental mammal diversification and the Cretaceous–Tertiary boundary

inferredcites →https://doi.org/10.1073/pnas.0811136106openalex-snapshot

Evidence for a Cenozoic radiation of ferns in an angiosperm-dominated canopy

inferredcites →https://doi.org/10.1073/pnas.0811268106openalex-snapshot

Chloroplast protein targeting involves localized translation in Chlamydomonas

inferredcites →https://doi.org/10.1073/pnas.1211733109openalex-snapshot

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model

inferredcites →https://doi.org/10.1073/pnas.1213498109openalex-snapshot

Hornwort pyrenoids, carbon-concentrating structures, evolved and were lost at least five times during the last 100 million years

inferredcites →https://doi.org/10.1073/pnas.1719588115openalex-snapshot

The timescale of early land plant evolution

inferredcites →https://doi.org/10.1080/10635150290069913openalex-snapshot

An Approximately Unbiased Test of Phylogenetic Tree Selection

inferredcites →https://doi.org/10.1086/427202openalex-snapshot

The Conifer Frenelopsis ramosissima (Cheirolepidiaceae) in the Lower Cretaceous of Texas: Systematic, Biogeographical, and Paleoecological Implications

inferredcites →https://doi.org/10.1086/428296openalex-snapshot

Explosive Radiation of Malpighiales Supports a Mid‐Cretaceous Origin of Modern Tropical Rain Forests

inferredcites →https://doi.org/10.1093/aob/mcac113openalex-snapshot

Phylotranscriptomics of liverworts: revisiting the backbone phylogeny and ancestral gene duplications

inferredcites →https://doi.org/10.1093/bioinformatics/bts492openalex-snapshot

treePL: divergence time estimation using penalized likelihood for large phylogenies

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/bioinformatics/btx063openalex-snapshot

Phyx: phylogenetic tools for unix

inferredcites →https://doi.org/10.1093/jxb/erx178openalex-snapshot

The algal pyrenoid: key unanswered questions

inferredcites →https://doi.org/10.1093/jxb/erx179openalex-snapshot

The role of Rubisco kinetics and pyrenoid morphology in shaping the CCM of haptophyte microalgae

inferredcites →https://doi.org/10.1093/molbev/msaa106openalex-snapshot

New Methods to Calculate Concordance Factors for Phylogenomic Datasets

inferredcites →https://doi.org/10.1093/molbev/msab063openalex-snapshot

Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus

inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

inferredcites →https://doi.org/10.1093/molbev/msw079openalex-snapshot

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

inferredcites →https://doi.org/10.1093/molbev/msx235openalex-snapshot

PhyloNetworks: A Package for Phylogenetic Networks

inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot

UFBoot2: Improving the Ultrafast Bootstrap Approximation

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026201openalex-snapshot

Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

inferredcites →https://doi.org/10.1093/plcell/koad157openalex-snapshot

The pyrenoid: the eukaryotic CO2-concentrating organelle

inferredcites →https://doi.org/10.1093/sysbio/syaa083openalex-snapshot

The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales

inferredcites →https://doi.org/10.1093/sysbio/syab011openalex-snapshot

Dissecting Incongruence between Concatenation- and Quartet-Based Approaches in Phylogenomic Data

inferredcites →https://doi.org/10.1093/sysbio/syab063openalex-snapshot

Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies

inferredcites →https://doi.org/10.1093/sysbio/syab064openalex-snapshot

Unveiling the Patterns of Reticulated Evolutionary Processes with Phylogenomics: Hybridization and Polyploidy in the Genus Rosa

inferredcites →https://doi.org/10.1093/sysbio/syac032openalex-snapshot

Target Enrichment and Extensive Population Sampling Help Untangle the Recent, Rapid Radiation of Oenothera Sect. Calylophus

inferredcites →https://doi.org/10.1093/sysbio/syad008openalex-snapshot

Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria

inferredcites →https://doi.org/10.1093/sysbio/syu055openalex-snapshot

Coalescent versus Concatenation Methods and the Placement of Amborella as Sister to Water Lilies

inferredcites →https://doi.org/10.1093/sysbio/syx041openalex-snapshot

Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling

inferredcites →https://doi.org/10.1093/sysbio/syy023openalex-snapshot

HyDe: A Python Package for Genome-Scale Hybridization Detection

inferredcites →https://doi.org/10.1098/rsbl.2017.0688openalex-snapshot

Adaptive introgression: a plant perspective

inferredcites →https://doi.org/10.1098/rspb.2001.1862openalex-snapshot

Inferring confidence sets of possibly misspecified gene trees

inferredcites →https://doi.org/10.1098/rspb.2020.2102openalex-snapshot

Target-capture phylogenomics provide insights on gene and species tree discordances in Old World treefrogs (Anura: Rhacophoridae)

inferredcites →https://doi.org/10.1098/rstb.2000.0704openalex-snapshot

Electron flow to oxygen in higher plants and algae: rates and control of direct photoreduction (Mehler reaction) and rubisco oxygenase

inferredcites →https://doi.org/10.1111/j.1420-9101.2007.01341.xopenalex-snapshot

Maternal transmission of cytoplasmic DNA in interspecific hybrids of peat mosses, Sphagnum (Bryophyta)

inferredcites →https://doi.org/10.1111/j.1469-8137.1992.tb05653.xopenalex-snapshot

The anthocerote chloroplast: a review

inferredcites →https://doi.org/10.1111/jeb.12095openalex-snapshot

Hybridization, speciation and novelty

inferredcites →https://doi.org/10.1111/jipb.12877openalex-snapshot

Recurrent genome duplication events likely contributed to both the ancient and recent rise of ferns

inferredcites →https://doi.org/10.1111/nph.13716openalex-snapshot

Divergence times and the evolution of morphological complexity in an early land plant lineage (Marchantiopsida) with a slow molecular rate

inferredcites →https://doi.org/10.1111/nph.18607openalex-snapshot

Revisiting ancient polyploidy in leptosporangiate ferns

inferredcites →https://doi.org/10.1111/nph.20221openalex-snapshot

Ancient large‐scale gene duplications and diversification in bryophytes illuminate the plant terrestrialization

inferredcites →https://doi.org/10.1111/pbi.12497openalex-snapshot

Introducing an algal carbon‐concentrating mechanism into higher plants: location and incorporation of key components

inferredcites →https://doi.org/10.1111/tpj.16142openalex-snapshot

Deep reticulation: the long legacy of hybridization in vascular plant evolution

inferredcites →https://doi.org/10.1126/science.1209926openalex-snapshot

Recent Synchronous Radiation of a Living Fossil

inferredcites →https://doi.org/10.1126/science.1230492openalex-snapshot

Time Scales of Critical Events Around the Cretaceous-Paleogene Boundary

inferredcites →https://doi.org/10.1127/0029-5035/2010/0091-0301openalex-snapshot

Development of multicellular spores in the hornwort genus Dendroceros (Dendrocerotaceae, Anthocerotophyta) and the occurrence of endospory in Bryophytes

inferredcites →https://doi.org/10.1130/spe361openalex-snapshot

The Hell Creek Formation and the Cretaceous-Tertiary boundary in the northern Great Plains: An Integrated continental record of the end of the Cretaceous

inferredcites →https://doi.org/10.1139/b04-139openalex-snapshot

What do we know about hybridization among bryophytes in nature?

inferredcites →https://doi.org/10.11646/bde.43.1.6openalex-snapshot

Checklist of fossil liverworts suitable for calibrating phylogenetic reconstructions

inferredcites →https://doi.org/10.11646/bde.43.1.7openalex-snapshot

Fossil mosses: What do they tell us about moss evolution?

inferredcites →https://doi.org/10.1179/1743282015y.0000000016openalex-snapshot

The hornworts: important advancements in early land plant evolution

inferredcites →https://doi.org/10.1186/1471-2148-13-239openalex-snapshot

Correlates of monoicy and dioicy in hornworts, the apparent sister group to vascular plants

inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

inferredcites →https://doi.org/10.1186/s12862-015-0347-8openalex-snapshot

Origin and diversification of living cycads: a cautionary tale on the impact of the branching process prior in Bayesian molecular dating

inferredcites →https://doi.org/10.12705/642.7openalex-snapshot

Biogeography and diversification rates in hornworts: The limitations of diversification modeling

inferredcites →https://doi.org/10.1371/journal.pbio.3000954openalex-snapshot

Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression

inferredcites →https://doi.org/10.1371/journal.pgen.1005896openalex-snapshot

Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1371/journal.pone.0185039openalex-snapshot

Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii

inferredcites →https://doi.org/10.1371/journal.pone.0200491openalex-snapshot

Genome-wide organellar analyses from the hornwort Leiosporoceros dussii show low frequency of RNA editing

inferredcites →https://doi.org/10.1639/0007-2745(2007)110[179:bpatma]2.0.co;2openalex-snapshot

Bryophyte phylogeny: Advancing the molecular and morphological frontiers

inferredcites →https://doi.org/10.1639/0007-2745(2007)110[214:pactda]2.0.co;2openalex-snapshot

Progress and challenges toward developing a phylogeny and classification of the hornworts

inferredcites →https://doi.org/10.2475/ajs.301.2.182openalex-snapshot

GEOCARB III: A revised model of atmospheric CO2 over Phanerozoic time

inferredcites →https://doi.org/10.3389/fpls.2021.820997openalex-snapshot

Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae—Gillenieae Clade

inferredcites →https://doi.org/10.3732/ajb.93.5.693openalex-snapshot

Structure and development of Nostoc strands in Leiosporoceros dussii (Anthocerotophyta): a novel symbiosis in land plants

inferredcites →https://doi.org/10.3897/phytokeys.59.6261openalex-snapshot

World checklist of hornworts and liverworts

inferredcites →https://doi.org/10.5252/cryptogamie-bryologie2020v41a9openalex-snapshot

Anthoceros tristanianus J.C.Villarreal, J.J.Engel & Váňa in Váňa & Engel (Anthocerotaceae, Anthocerotophyta) a New Record for South America from the Colombian Bryophyte Flora

inferredcites →https://doi.org/10.5962/bhl.title.4553openalex-snapshot

Introgressive hybridization

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/phytokeys.268.172910zenodo-depositor-declared

Molecular and morphological insights into Phaeoceros himalayensis (Notothyladaceae) and related species: evidence for two new species from Thailand

inferred← citeshttps://doi.org/10.1002/ajb2.70143openalex-snapshot

Climate niches structure a regional hybrid zone in Sphagnum (peatmoss, Bryophyta)

inferred← citeshttps://doi.org/10.1007/s00606-026-02014-yopenalex-snapshot

Comparative spore wall architecture and development across hornwort diversity and across time

inferred← citeshttps://doi.org/10.1007/s11770-026-1502-2openalex-snapshot

Paleoclimate and sediment provenance evolution revealed by terrestrial geochemical records from the carboniferous–cretaceous liupanshan basin, northwestern China

inferred← citeshttps://doi.org/10.1016/j.isci.2026.115487openalex-snapshot

Phylogenomic and evolutionary analysis of arrowhead (Sagittaria L.) chloroplast genomes

inferred← citeshttps://doi.org/10.1038/s41477-024-01883-wopenalex-snapshot

Pan-phylum genomes of hornworts reveal conserved autosomes but dynamic accessory and sex chromosomes

inferred← citeshttps://doi.org/10.1093/botlinnean/boaf055openalex-snapshot

On the incongruences between phylogenies inferred from nuclear ITS and organellar markers in the Rhabdoweisiaceae (Bryophyta)

inferred← citeshttps://doi.org/10.1093/plphys/kiag247openalex-snapshot

Hornwort pyrenoids: a terrestrial exception with engineering lessons

inferred← citeshttps://doi.org/10.1101/2025.05.05.652161openalex-snapshot

Submersion and oxidative stress triggers pyrenoid formation, carbon-concentration-related protein remodeling and sub-plastidial rearrangements in hornworts

inferred← citeshttps://doi.org/10.1111/nph.70167openalex-snapshot

Molecular underpinnings of hornwort CO 2 concentrating mechanisms: subcellular localization of putative key molecular components in the model hornwort Anthoceros agrestis

inferred← citeshttps://doi.org/10.1111/nph.70353openalex-snapshot

Evolutionary history of sex and accessory chromosomes in hornworts

inferred← citeshttps://doi.org/10.1111/nph.70672openalex-snapshot

Evolution and classification of hornworts: new insights from the first plastome‐based phylogeny

inferred← citeshttps://doi.org/10.3389/fpls.2026.1917865openalex-snapshot

PpLEA genes in embryophytes,instead of LEAs being angiosperm-unique

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.