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Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Genetic Resources of Kiwifruit: Domestication and Breeding
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Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes
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Biological consequences of dosage dependent gene regulatory systems
inferredcites →https://doi.org/10.1016/j.tree.2005.07.008openalex-snapshot
Genome duplication and the origin of angiosperms
inferredcites →https://doi.org/10.1016/j.ympev.2003.09.014openalex-snapshot
Conflicting phylogenies of balsaminoid families and the polytomy in Ericales: combining data in a Bayesian framework
inferredcites →https://doi.org/10.1038/35048692openalex-snapshot
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
inferredcites →https://doi.org/10.1038/nature01521openalex-snapshot
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
inferredcites →https://doi.org/10.1038/nature06148openalex-snapshot
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
inferredcites →https://doi.org/10.1073/pnas.0501102102openalex-snapshot
Modeling gene and genome duplications in eukaryotes
inferredcites →https://doi.org/10.1073/pnas.0811575106openalex-snapshot
The frequency of polyploid speciation in vascular plants
inferredcites →https://doi.org/10.1073/pnas.0900906106openalex-snapshot
Plants with double genomes might have had a better chance to survive the Cretaceous–Tertiary extinction event
inferredcites →https://doi.org/10.1073/pnas.94.13.6809openalex-snapshot
DNA sequence evidence for the segmental allotetraploid origin of maize
inferredcites →https://doi.org/10.1080/10635150590945359openalex-snapshot
Placing Paleopolyploidy in Relation to Taxon Divergence: A Phylogenetic Analysis in Legumes Using 39 Gene Families
inferredcites →https://doi.org/10.1089/10665270050081478openalex-snapshot
A Greedy Algorithm for Aligning DNA Sequences
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PAML: a program package for phylogenetic analysis by maximum likelihood
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PatternHunter: faster and more sensitive homology search
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Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales
inferredcites →https://doi.org/10.1093/molbev/msn187openalex-snapshot
Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
inferredcites →https://doi.org/10.1093/molbev/msp181openalex-snapshot
Pistillata—Duplications as a Mode for Floral Diversification in (Basal) Asterids
inferredcites →https://doi.org/10.1093/nar/24.14.2730openalex-snapshot
PairWise and SearchWise: Finding the Optimal Alignment in a Simultaneous Comparison of a Protein Profile against All DNA Translation Frames
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/28.1.141openalex-snapshot
The TIGR Gene Indices: reconstruction and representation of expressed gene sequences
inferredcites →https://doi.org/10.1093/nar/gkg609openalex-snapshot
RevTrans: multiple alignment of coding DNA from aligned amino acid sequences
inferredcites →https://doi.org/10.1093/nar/gkh073openalex-snapshot
Database resources of the National Center for Biotechnology Information: update
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkl1031openalex-snapshot
Database resources of the National Center for Biotechnology Information
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A codon-based model of nucleotide substitution for protein-coding DNA sequences.
inferredcites →https://doi.org/10.1098/rspb.2001.1782openalex-snapshot
Evolution of the angiosperms: calibrating the family tree
inferredcites →https://doi.org/10.1101/gr.080978.108openalex-snapshot
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
inferredcites →https://doi.org/10.1101/gr.4825606openalex-snapshot
Widespread genome duplications throughout the history of flowering plants
inferredcites →https://doi.org/10.1104/pp.108.124867openalex-snapshot
Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids
inferredcites →https://doi.org/10.1105/tpc.021410openalex-snapshot
Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution[W]
inferredcites →https://doi.org/10.1105/tpc.106.041111openalex-snapshot
Independent Ancient Polyploidy Events in the Sister Families Brassicaceae and Cleomaceae
inferredcites →https://doi.org/10.1111/j.1095-8339.2005.00372.xopenalex-snapshot
The cytology of Actinidia, Saurauia and Clematoclethra (Actinidiaceae)
inferredcites →https://doi.org/10.1111/j.1469-8137.2005.01378.xopenalex-snapshot
EST data suggest that poplar is an ancient polyploid
inferredcites →https://doi.org/10.1126/science.1128691openalex-snapshot
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
inferredcites →https://doi.org/10.1126/science.290.5494.1151openalex-snapshot
The Evolutionary Fate and Consequences of Duplicate Genes
inferredcites →https://doi.org/10.1126/science.290.5499.2114openalex-snapshot
The Origins of Genomic Duplications in Arabidopsis
inferredcites →https://doi.org/10.1139/g04-047openalex-snapshot
Mining EST databases to resolve evolutionary events in major crop species
inferredcites →https://doi.org/10.1186/1471-2105-6-232openalex-snapshot
EXPANDER – an integrative program suite for microarray data analysis
inferredcites →https://doi.org/10.1186/1471-2148-7-130openalex-snapshot
An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens
inferredcites →https://doi.org/10.1186/1471-2164-9-351openalex-snapshot
Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening
inferredcites →https://doi.org/10.1525/bio.2010.60.3.4openalex-snapshot
Unfurling Fern Biology in the Genomics Age
inferredcites →https://doi.org/10.18637/jss.v004.i02openalex-snapshot
The EMMIX Algorithm for the Fitting of Normal and t -Components
inferredcites →https://doi.org/10.3417/2007176openalex-snapshot
A Renaissance of Cytogenetics: Studies in Polyploidy and Chromosomal Evolution1
inferredcites →https://doi.org/10.3732/ajb.0800079openalex-snapshot
Polyploidy and angiosperm diversification
inferredcites →https://doi.org/10.3732/ajb.89.4.677openalex-snapshot
Phylogenetic relationships in the order Ericales s.l.: analyses of molecular data from five genes from the plastid and mitochondrial genomes
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Chromatin Topological Domains Associate With the Rapid Formation of Tandem Duplicates in Plants
inferred← citeshttps://doi.org/10.1002/ajb2.1469openalex-snapshot
A consensus phylogenomic approach highlights paleopolyploid and rapid radiation in the history of Ericales
inferred← citeshttps://doi.org/10.1002/ajb2.16378openalex-snapshot
Species‐tree topology impacts the inference of ancient whole‐genome duplications across the angiosperm phylogeny
inferred← citeshttps://doi.org/10.1002/aps3.11536openalex-snapshot
GOgetter: A pipeline for summarizing and visualizing GO slim annotations for plant genetic data
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Plant Genome Diversity Volume 1
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Duplications and Turnover in Plant Genomes
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Significance and Biological Consequences of Polyploidization in Land Plant Evolution
inferred← citeshttps://doi.org/10.1007/s11032-015-0367-5openalex-snapshot
Development of a high-density cranberry SSR linkage map for comparative genetic analysis and trait detection
inferred← citeshttps://doi.org/10.1007/s11033-020-05597-yopenalex-snapshot
The effects of hybridization and genome doubling in plant evolution via allopolyploidy
inferred← citeshttps://doi.org/10.1007/s11295-014-0771-8openalex-snapshot
Natural hybridization, introgression breeding, and cultivar improvement in the genus Actinidia
inferred← citeshttps://doi.org/10.1007/s11295-015-0846-1openalex-snapshot
Characterisation, evolutionary trends and mapping of putative resistance and defence genes in Actinidia (kiwifruit)
inferred← citeshttps://doi.org/10.1007/s13258-016-0455-xopenalex-snapshot
Gene loss/retention and evolutionary pattern of ascorbic acid biosynthesis and recycling genes in Brassica rapa following whole genome triplication
inferred← citeshttps://doi.org/10.1016/b978-0-12-803066-0.00001-0openalex-snapshot
Systematics and Genetic Variation of Actinidia
inferred← citeshttps://doi.org/10.1016/j.bbamem.2010.12.008openalex-snapshot
Lipid-binding surfaces of membrane proteins: Evidence from evolutionary and structural analysis
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First chromosome-scale genome of Indian tea (Camellia assamica Masters; syn C. sinensis var assamica) cultivar TV 1 reveals its evolution and domestication of caffeine synthesis
inferred← citeshttps://doi.org/10.1016/j.isci.2018.08.003openalex-snapshot
Two Likely Auto-Tetraploidization Events Shaped Kiwifruit Genome and Contributed to Establishment of the Actinidiaceae Family
inferred← citeshttps://doi.org/10.1016/j.molp.2018.01.002openalex-snapshot
Widespread Whole Genome Duplications Contribute to Genome Complexity and Species Diversity in Angiosperms
inferred← citeshttps://doi.org/10.1016/j.molp.2020.04.010openalex-snapshot
The Reference Genome of Tea Plant and Resequencing of 81 Diverse Accessions Provide Insights into Its Genome Evolution and Adaptation
inferred← citeshttps://doi.org/10.1016/j.pbi.2012.03.010openalex-snapshot
Rarely successful polyploids and their legacy in plant genomes
inferred← citeshttps://doi.org/10.1016/j.scienta.2024.113149openalex-snapshot
Distribution patterns and driving factors of mixed-ploidy Actinidia species in China
inferred← citeshttps://doi.org/10.1016/j.scienta.2024.113533openalex-snapshot
Potential distribution under climate change and ecological niche differences between Actinidia chinensis complex
inferred← citeshttps://doi.org/10.1016/j.xplc.2024.100856openalex-snapshot
Genome assembly of autotetraploid Actinidia arguta highlights adaptive evolution and enables dissection of important economic traits
inferred← citeshttps://doi.org/10.1038/ncomms3640openalex-snapshot
Draft genome of the kiwifruit Actinidia chinensis
inferred← citeshttps://doi.org/10.1038/s41438-021-00613-zopenalex-snapshot
An ancient whole-genome duplication event and its contribution to flavor compounds in the tea plant (Camellia sinensis)
inferred← citeshttps://doi.org/10.1038/s41598-017-15911-7openalex-snapshot
De novo transcriptome assembly of Zanthoxylum bungeanum using Illumina sequencing for evolutionary analysis and simple sequence repeat marker development
inferred← citeshttps://doi.org/10.1038/s41598-025-95789-yopenalex-snapshot
Comparative chloroplast genomics provides insights into the phylogenetic relationships and evolutionary history for Actinidia species
inferred← citeshttps://doi.org/10.1079/9781800620933.0003openalex-snapshot
Biology of the Genus Actinidia
inferred← citeshttps://doi.org/10.1093/aob/mcac007openalex-snapshot
Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication
inferred← citeshttps://doi.org/10.1093/aob/mcac132openalex-snapshot
Polyploidy: its consequences and enabling role in plant diversification and evolution
inferred← citeshttps://doi.org/10.1093/aob/mcq168openalex-snapshot
Genes in evolution: the control of diversity and speciation
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Phylogenetic pinpointing of a paleopolyploidy event within the flax genus (Linum) using transcriptomics
inferred← citeshttps://doi.org/10.1093/gbe/evac017openalex-snapshot
Chromosome-Scale Genome Assembly of Gilia yorkii Enables Genetic Mapping of Floral Traits in an Interspecies Cross
inferred← citeshttps://doi.org/10.1093/gbe/evw091openalex-snapshot
The Small Nuclear Genomes ofSelaginellaAre Associated with a Low Rate of Genome Size Evolution
inferred← citeshttps://doi.org/10.1093/gbe/evy200openalex-snapshot
Assessing the performance of Ks plots for detecting ancient whole genome duplications
inferred← citeshttps://doi.org/10.1093/gbe/evz245openalex-snapshot
The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae)
inferred← citeshttps://doi.org/10.1093/gigascience/giaa004openalex-snapshot
Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
inferred← citeshttps://doi.org/10.1093/hr/uhag011openalex-snapshot
Haplotype-resolved genome assembly provides insights into the evolutionary origin of waterlogging-tolerant Actinidia valvata hexaploid
inferred← citeshttps://doi.org/10.1093/jxb/eraf380openalex-snapshot
Development of an efficient CRISPR-mediated genome editing platform in the diploid-polyploid model system Tragopogon (Asteraceae)
inferred← citeshttps://doi.org/10.1093/jxb/erag092openalex-snapshot
Two LEAFY homologs regulate floral patterning and development without affecting flowering time in kiwifruit
inferred← citeshttps://doi.org/10.1093/molbev/msaa160openalex-snapshot
Asterid Phylogenomics/Phylotranscriptomics Uncover Morphological Evolutionary Histories and Support Phylogenetic Placement for Numerous Whole-Genome Duplications
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Comparative Genomics Elucidates the Origin of a Supergene Controlling Floral Heteromorphism
inferred← citeshttps://doi.org/10.1093/molbev/mss214openalex-snapshot
Inference of Genome Duplications from Age Distributions Revisited
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SMRT sequencing yields the chromosome-scale reference genome of tea tree, Camellia sinensis var. sinensis
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Transcriptome-based phylogeny and whole-genome duplication in Theaceae
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A consensus phylogenomic approach highlights paleopolyploid and rapid radiation in the history of Ericales
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A Y-Encoded Suppressor of Feminization Arose via Lineage-Specific Duplication of a Cytokinin Response Regulator in Kiwifruit
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Pangenome analysis reveals the genetic mechanism underlying high‐altitude adaptation in Qinghai–Xizang (Tibet) Plateau Rhododendron
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Continuous genetic adaptation to high elevations of alpine bamboos in the Hengduan Mountains, Southwest China
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Are polyploids really evolutionary dead‐ends (again)? A critical reappraisal of Mayrose et al . (2011)
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On the relative abundance of autopolyploids and allopolyploids
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Analyses of transcriptome sequences reveal multiple ancient large‐scale duplication events in the ancestor of Sphagnopsida (Bryophyta)
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Repeated shifts out of tropical climates preceded by whole genome duplication
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Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention
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The chromosome‐level genome of Akebia trifoliata as an important resource to study plant evolution and environmental adaptation in the Cretaceous
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Chromosome‐level genome of putative autohexaploid Actinidia deliciosa provides insights into polyploidisation and evolution
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Early genome duplications in conifers and other seed plants
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Patterns and Processes of Diploidization in Land Plants
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Comprehensive analysis of expressed sequence tags from cultivated and wild radish (Raphanus spp.)
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Evidence of multiple genome duplication events in Mytilus evolution
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Comparative analysis of miniature inverted–repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons in six Citrus species
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Molecular footprints of selection effects and whole genome duplication (WGD) events in three blueberry species: detected by transcriptome dataset
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Genome-wide identification of kiwifruit K+ channel Shaker family members and their response to low-K+ stress
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Genome-wide identification of the kiwifruit AcTPS family and analysis of its drought-responsive expression patterns
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Genomics insights into flowering and floral pattern formation: regional duplication and seasonal pattern of gene expression in Camellia
inferred← citeshttps://doi.org/10.1186/s13059-020-02212-yopenalex-snapshot
A reappraisal of the phylogenetic placement of the Aquilegia whole-genome duplication
inferred← citeshttps://doi.org/10.1186/s43897-024-00083-6openalex-snapshot
Haplotype-resolved genome assembly provides insights into evolutionary history of the Actinidia arguta tetraploid
inferred← citeshttps://doi.org/10.1270/jsbbs.62.186openalex-snapshot
Expressed sequence tags from organ-specific cDNA libraries of tea (Camellia sinensis) and polymorphisms and transferability of EST-SSRs across Camellia species
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008566openalex-snapshot
The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants
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De Novo Assembly of Coding Sequences of the Mangrove Palm (Nypa fruticans) Using RNA-Seq and Discovery of Whole-Genome Duplications in the Ancestor of Palms
inferred← citeshttps://doi.org/10.3389/fevo.2018.00117openalex-snapshot
The “Polyploid Hop”: Shifting Challenges and Opportunities Over the Evolutionary Lifespan of Genome Duplications
inferred← citeshttps://doi.org/10.3389/fpls.2022.1004387openalex-snapshot
Chromosome-scale genome assembly of Camellia sinensis combined with multi-omics provides insights into its responses to infestation with green leafhoppers
inferred← citeshttps://doi.org/10.3389/fpls.2022.1006904openalex-snapshot
Potential allopolyploid origin of Ericales revealed with gene-tree reconciliation
inferred← citeshttps://doi.org/10.3389/fpls.2022.869423openalex-snapshot
Impact of polyploidy on plant tolerance to abiotic and biotic stresses
inferred← citeshttps://doi.org/10.3389/fpls.2022.882441openalex-snapshot
Phylotranscriptomics Illuminates the Placement of Whole Genome Duplications and Gene Retention in Ferns
inferred← citeshttps://doi.org/10.3390/ijms22041783openalex-snapshot
Origin and Fates of TERT Gene Copies in Polyploid Plants
inferred← citeshttps://doi.org/10.3390/plants11131633openalex-snapshot
Genome-Wide Identification and Structural Characterization of Growth-Regulating Factors (GRFs) in Actinida eriantha and Actinidia chinensis
inferred← citeshttps://doi.org/10.3732/ajb.1100537openalex-snapshot
Phylogenomic analysis of transcriptome data elucidates co‐occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae)
inferred← citeshttps://doi.org/10.3732/ajb.1600113openalex-snapshot
Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae
inferred← citeshttps://doi.org/10.3732/ajb.1600272openalex-snapshot
Spreading Winge and flying high: The evolutionary importance of polyploidy after a century of study
inferred← citeshttps://doi.org/10.4137/ebo.s5861openalex-snapshot
EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics
inferred← citeshttps://doi.org/10.48130/opr-0024-0001openalex-snapshot
Progress in phylogenetics, multi-omics and flower coloration studies in Rhododendron
inferred← citeshttps://doi.org/10.5010/jpb.2015.42.4.342openalex-snapshot
Current status and prospects of kiwifruit (Actinidia chinensis) genomics
inferred← citeshttps://doi.org/10.6084/m9.figshare.19695537openalex-snapshot
Additional file 1 of Evidence of multiple genome duplication events in Mytilus evolution
inferred← citeshttps://doi.org/10.6084/m9.figshare.25303058openalex-snapshot
Additional file 1 of Genomics insights into flowering and floral pattern formation: regional duplication and seasonal pattern of gene expression in Camellia
inferred← citeshttps://doi.org/10.6084/m9.figshare.25303177openalex-snapshot
Additional file 2 of Genomics insights into flowering and floral pattern formation: regional duplication and seasonal pattern of gene expression in Camellia
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