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Early genome duplications in conifers and other seed plants
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-1-61779-870-2_8openalex-snapshot
Preparation of Normalized cDNA Libraries for 454 Titanium Transcriptome Sequencing
inferredcites →https://doi.org/10.1007/978-3-7091-1130-7_11openalex-snapshot
Duplications and Turnover in Plant Genomes
inferredcites →https://doi.org/10.1016/j.cub.2011.12.027openalex-snapshot
Rapid, Repeated, and Clustered Loss of Duplicate Genes in Allopolyploid Plant Populations of Independent Origin
inferredcites →https://doi.org/10.1016/j.pbi.2012.03.010openalex-snapshot
Rarely successful polyploids and their legacy in plant genomes
inferredcites →https://doi.org/10.1016/j.pbi.2012.03.011openalex-snapshot
Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model
inferredcites →https://doi.org/10.1016/j.pbi.2013.11.002openalex-snapshot
Gene duplication as a driver of plant morphogenetic evolution
inferredcites →https://doi.org/10.1016/j.pbi.2014.05.008openalex-snapshot
Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time
inferredcites →https://doi.org/10.1038/nature02361openalex-snapshot
Ferns diversified in the shadow of angiosperms
inferredcites →https://doi.org/10.1038/nature09916openalex-snapshot
Ancestral polyploidy in seed plants and angiosperms
inferredcites →https://doi.org/10.1038/nature12211openalex-snapshot
The Norway spruce genome sequence and conifer genome evolution
inferredcites →https://doi.org/10.1038/nature14187openalex-snapshot
Polyploidy can drive rapid adaptation in yeast
inferredcites →https://doi.org/10.1038/nrg2600openalex-snapshot
The evolutionary significance of ancient genome duplications
inferredcites →https://doi.org/10.1073/pnas.0811575106openalex-snapshot
The frequency of polyploid speciation in vascular plants
inferredcites →https://doi.org/10.1073/pnas.1014138108openalex-snapshot
Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus
inferredcites →https://doi.org/10.1073/pnas.1323926111openalex-snapshot
Phylotranscriptomic analysis of the origin and early diversification of land plants
inferredcites →https://doi.org/10.1073/pnas.1402475111openalex-snapshot
Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids
inferredcites →https://doi.org/10.1073/pnas.1503926112openalex-snapshot
The butterfly plant arms-race escalated by gene and genome duplications
inferredcites →https://doi.org/10.1086/680052openalex-snapshot
Exploring the Relationships between Mutation Rates, Life History, Genome Size, Environment, and Species Richness in Flowering Plants
inferredcites →https://doi.org/10.1093/aob/mcq129openalex-snapshot
Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales
inferredcites →https://doi.org/10.1093/bioinformatics/btm226openalex-snapshot
Multiple alignment by aligning alignments
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu077openalex-snapshot
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
inferredcites →https://doi.org/10.1093/gbe/evp040openalex-snapshot
Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales
inferredcites →https://doi.org/10.1093/gbe/evs009openalex-snapshot
Genome-Wide Analysis of Syntenic Gene Deletion in the Grasses
inferredcites →https://doi.org/10.1093/gbe/evs066openalex-snapshot
Decoding Plant and Animal Genome Plasticity from Differential Paleo-Evolutionary Patterns and Processes
inferredcites →https://doi.org/10.1093/molbev/msn187openalex-snapshot
Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
inferredcites →https://doi.org/10.1093/molbev/msu296openalex-snapshot
Multiple Polyploidy Events in the Early Radiation of Nodulating and Nonnodulating Legumes
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/nar/gkt1195openalex-snapshot
Recent updates and developments to plant genome size databases
inferredcites →https://doi.org/10.1101/gr.080978.108openalex-snapshot
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1101/gr.168997.113openalex-snapshot
Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary
inferredcites →https://doi.org/10.1101/gr.1917404openalex-snapshot
Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs
inferredcites →https://doi.org/10.1101/gr.3681406openalex-snapshot
Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
inferredcites →https://doi.org/10.1101/gr.4825606openalex-snapshot
Widespread genome duplications throughout the history of flowering plants
inferredcites →https://doi.org/10.1101/gr.9.9.868openalex-snapshot
CAP3: A DNA Sequence Assembly Program
inferredcites →https://doi.org/10.1105/tpc.110.081281openalex-snapshot
Two-Phase Resolution of Polyploidy in theArabidopsisMetabolic Network Gives Rise to Relative and Absolute Dosage Constraints
inferredcites →https://doi.org/10.1105/tpc.114.127597openalex-snapshot
Integrated Syntenic and Phylogenomic Analyses Reveal an Ancient Genome Duplication in Monocots
inferredcites →https://doi.org/10.1111/j.1365-294x.2006.02775.xopenalex-snapshot
Microarray analysis reveals differential gene expression in hybrid sunflower species
inferredcites →https://doi.org/10.1111/nph.13191openalex-snapshot
The Chromosome Counts Database ( CCDB ) – a community resource of plant chromosome numbers
inferredcites →https://doi.org/10.1111/nph.13698openalex-snapshot
On the relative abundance of autopolyploids and allopolyploids
inferredcites →https://doi.org/10.1126/science.1153585openalex-snapshot
Genomic Plasticity and the Diversity of Polyploid Plants
inferredcites →https://doi.org/10.1126/science.1171243openalex-snapshot
Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees
inferredcites →https://doi.org/10.1126/science.1203810openalex-snapshot
The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants
inferredcites →https://doi.org/10.1126/science.1241089openalex-snapshot
The Amborella Genome and the Evolution of Flowering Plants
inferredcites →https://doi.org/10.1146/annurev.arplant.043008.092122openalex-snapshot
Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition
inferredcites →https://doi.org/10.1155/2012/217037openalex-snapshot
Reactive Oxygen Species, Oxidative Damage, and Antioxidative Defense Mechanism in Plants under Stressful Conditions
inferredcites →https://doi.org/10.1155/2012/292857openalex-snapshot
Exploring Diversification and Genome Size Evolution in Extant Gymnosperms through Phylogenetic Synthesis
inferredcites →https://doi.org/10.1186/1471-2164-10-219openalex-snapshot
Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx
inferredcites →https://doi.org/10.1186/1741-7007-10-84openalex-snapshot
A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers
inferredcites →https://doi.org/10.1371/journal.pone.0107679openalex-snapshot
Phylogeny and Divergence Times of Gymnosperms Inferred from Single-Copy Nuclear Genes
inferredcites →https://doi.org/10.1515/sg-2005-0010openalex-snapshot
Polyploidy in Gymnosperms: Revisited
inferredcites →https://doi.org/10.1534/g3.112.003871openalex-snapshot
Allele Identification for Transcriptome-Based Population Genomics in the Invasive PlantCentaurea solstitialis
inferredcites →https://doi.org/10.1600/0363644042451143openalex-snapshot
Phylogenetic Relationships in Ephedra (Gnetales): Evidence from Nuclear and Chloroplast DNA Sequence Data
inferredcites →https://doi.org/10.3732/ajb.1100537openalex-snapshot
Phylogenomic analysis of transcriptome data elucidates co‐occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae)
inferredcites →https://doi.org/10.3732/ajb.1400178openalex-snapshot
The polyploidy revolution then…and now: Stebbins revisited
inferredcites →https://doi.org/10.4137/ebo.s5861openalex-snapshot
EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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EVOLUTIONARY PATTERNS OF GENOME SIZE AND CHROMOSOME NUMBER VARIATION IN BEGONIACEAE
inferred← citeshttps://doi.org/10.1002/9780470015902.a0026814openalex-snapshot
Genome Evolution in Plants
inferred← citeshttps://doi.org/10.1002/advs.202411098openalex-snapshot
Convergent Patterns of Karyotype Evolution Underlying Karyotype Uniformity in Conifers
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Idahoa and Subularia: Hidden polyploid origins of two enigmatic genera of crucifers
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inferred← citeshttps://doi.org/10.1007/7397_2016_26openalex-snapshot
Evolutionary Histories of Gene Families in Angiosperm Trees
inferred← citeshttps://doi.org/10.1007/978-1-0716-2561-3_3openalex-snapshot
Inference of Ancient Polyploidy Using Transcriptome Data
inferred← citeshttps://doi.org/10.1007/978-3-030-11048-2_15openalex-snapshot
Whole-Genome Duplications in Pear and Apple
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Transposable Elements in Pines
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Maritime Pine Genomics in Focus
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Biosystematic studies on the genus Polygonatum (Asparagaceae) VII. Plastome phylogeny and karyotype evolution
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Genetic diversity of the U.S. collection of Chinese hemlock Tsuga chinensis (Franch.) E. Pritz. based on simple sequence repeat markers
inferred← citeshttps://doi.org/10.1007/s11295-017-1165-5openalex-snapshot
Retrotransposon distribution and copy number variation in gymnosperm genomes
inferred← citeshttps://doi.org/10.1007/s11295-017-1209-xopenalex-snapshot
Assessment of gene copy number variation of Scots pine thaumatin-like protein gene using real-time PCR based methods
inferred← citeshttps://doi.org/10.1007/s11634-019-00361-yopenalex-snapshot
Finite mixture-of-gamma distributions: estimation, inference, and model-based clustering
inferred← citeshttps://doi.org/10.1016/b978-0-12-812628-8.50005-5openalex-snapshot
Evolution and Diversity of Woody and Seed Plants
inferred← citeshttps://doi.org/10.1016/b978-0-12-812628-8.50013-4openalex-snapshot
Plant Reproductive Biology
inferred← citeshttps://doi.org/10.1016/bs.abr.2016.02.001openalex-snapshot
Evolutionary Genomics of Ferns and Lycophytes
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2018.11.011openalex-snapshot
The role of plant root systems in evolutionary adaptation
inferred← citeshttps://doi.org/10.1016/j.cell.2021.12.006openalex-snapshot
The Chinese pine genome and methylome unveil key features of conifer evolution
inferred← citeshttps://doi.org/10.1016/j.csbj.2022.06.026openalex-snapshot
Pervasive genome duplications across the plant tree of life and their links to major evolutionary innovations and transitions
inferred← citeshttps://doi.org/10.1016/j.cub.2025.12.053openalex-snapshot
Discovery of additional ancient genome duplications in yeasts
inferred← citeshttps://doi.org/10.1016/j.gene.2018.04.024openalex-snapshot
Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis
inferred← citeshttps://doi.org/10.1016/j.gpb.2020.10.002openalex-snapshot
Paleo-Polyploidization in Lycophytes
inferred← citeshttps://doi.org/10.1016/j.hpj.2019.11.003openalex-snapshot
Plant Polyploidy: Origin, Evolution, and Its Influence on Crop Domestication
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inferred← citeshttps://doi.org/10.1016/j.jare.2023.09.015openalex-snapshot
An ancient whole-genome duplication in barnacles contributes to their diversification and intertidal sessile life adaptation
inferred← citeshttps://doi.org/10.1016/j.molp.2018.01.002openalex-snapshot
Widespread Whole Genome Duplications Contribute to Genome Complexity and Species Diversity in Angiosperms
inferred← citeshttps://doi.org/10.1016/j.molp.2018.12.019openalex-snapshot
Finding Evidence for Whole Genome Duplications: A Reappraisal
inferred← citeshttps://doi.org/10.1016/j.molp.2021.04.015openalex-snapshot
Chromosome-level genome of Himalayan yew provides insights into the origin and evolution of the paclitaxel biosynthetic pathway
inferred← citeshttps://doi.org/10.1016/j.palaeo.2023.111723openalex-snapshot
The ‘seed-fern’ Lepidopteris mass-produced the abnormal pollen Ricciisporites during the end-Triassic biotic crisis
inferred← citeshttps://doi.org/10.1016/j.pbi.2017.03.001openalex-snapshot
Network approaches for plant phylogenomic synteny analysis
inferred← citeshttps://doi.org/10.1016/j.pbi.2018.01.005openalex-snapshot
Polyploid Arabidopsis species originated around recent glaciation maxima
inferred← citeshttps://doi.org/10.1016/j.pbi.2018.03.001openalex-snapshot
Post-polyploid diploidization and diversification through dysploid changes
inferred← citeshttps://doi.org/10.1016/j.pbi.2019.08.009openalex-snapshot
A molecular update on the origin of the carpel
inferred← citeshttps://doi.org/10.1016/j.plantsci.2019.110277openalex-snapshot
Phylogenetically distant group of terpene synthases participates in cadinene and cedrane-type sesquiterpenes accumulation in Taiwania cryptomerioides
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Genome Stability and Evolution: Attempting a Holistic View
inferred← citeshttps://doi.org/10.1016/j.tplants.2016.10.001openalex-snapshot
The Evolution of HD2 Proteins in Green Plants
inferred← citeshttps://doi.org/10.1016/j.tplants.2018.07.006openalex-snapshot
Whole-Genome Duplication and Plant Macroevolution
inferred← citeshttps://doi.org/10.1016/j.xplc.2023.100599openalex-snapshot
Genomics of plant speciation
inferred← citeshttps://doi.org/10.1016/j.xplc.2023.100643openalex-snapshot
The Metasequoia genome and evolutionary relationships among redwoods
inferred← citeshttps://doi.org/10.1016/j.ympev.2016.01.008openalex-snapshot
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Polyploidy in gymnosperms – Insights into the genomic and evolutionary consequences of polyploidy in Ephedra
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Evolutionary patterns of plastome uncover diploid-polyploid maternal relationships in Triticeae
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Fossilized pollen malformations as indicators of past environmental stress and meiotic disruption: insights from modern conifers
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Analysis of the Coptis chinensis genome reveals the diversification of protoberberine-type alkaloids
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The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts
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Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages
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Convergence and divergence of DNA methylation and gene expression patterns in neopolyploid Arabidopsis kamchatica
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A genome for gnetophytes and early evolution of seed plants
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A Jurassic leap for flowering plants
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Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylation
inferred← citeshttps://doi.org/10.1038/s41477-021-00933-xopenalex-snapshot
The nearly complete genome of Ginkgo biloba illuminates gymnosperm evolution
inferred← citeshttps://doi.org/10.1038/s41477-021-00964-4openalex-snapshot
Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms
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Dynamic genome evolution in a model fern
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One thousand plant transcriptomes and the phylogenomics of green plants
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Multiple large-scale gene and genome duplications during the evolution of hexapods
inferred← citeshttps://doi.org/10.1086/688763openalex-snapshot
The Case of the Missing Ancient Fungal Polyploids
inferred← citeshttps://doi.org/10.1086/694762openalex-snapshot
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Comparative Ecophysiology of Hybrid Wood Fern Species
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Life without a Sporophyte: The Origin and Genomic Consequences of Asexual Reproduction in a Gametophyte-Only Fern
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inferred← citeshttps://doi.org/10.1093/aob/mcz053openalex-snapshot
Epidermal patterning and stomatal development in Gnetales
inferred← citeshttps://doi.org/10.1093/aobpla/plaa055openalex-snapshot
Molecular evolution of GDP-L-galactose phosphorylase, a key regulatory gene in plant ascorbate biosynthesis
inferred← citeshttps://doi.org/10.1093/aobpla/plw019openalex-snapshot
Conflicting genomic signals affect phylogenetic inference in four species of North American pines
inferred← citeshttps://doi.org/10.1093/bioinformatics/btac669openalex-snapshot
Tree2GD: a phylogenomic method to detect large-scale gene duplication events
inferred← citeshttps://doi.org/10.1093/g3journal/jkae020openalex-snapshot
High-density genetic linkage mapping in Sitka spruce advances the integration of genomic resources in conifers
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Unbiased Subgenome Evolution in Allotetraploid Species ofEphedraand Its Implications for the Evolution of Large Genomes in Gymnosperms
inferred← citeshttps://doi.org/10.1093/gbe/evac017openalex-snapshot
Chromosome-Scale Genome Assembly of Gilia yorkii Enables Genetic Mapping of Floral Traits in an Interspecies Cross
inferred← citeshttps://doi.org/10.1093/gbe/evae113openalex-snapshot
Conifers Concentrate Large Numbers of NLR Immune Receptor Genes on One Chromosome
inferred← citeshttps://doi.org/10.1093/gbe/evae128openalex-snapshot
Molecular Dating of the Teleost Whole Genome Duplication (3R) Is Compatible With the Expectations of Delayed Rediploidization
inferred← citeshttps://doi.org/10.1093/gbe/evw058openalex-snapshot
Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data
inferred← citeshttps://doi.org/10.1093/gbe/evw091openalex-snapshot
The Small Nuclear Genomes ofSelaginellaAre Associated with a Low Rate of Genome Size Evolution
inferred← citeshttps://doi.org/10.1093/gbe/evy200openalex-snapshot
Assessing the performance of Ks plots for detecting ancient whole genome duplications
inferred← citeshttps://doi.org/10.1093/gbe/evz239openalex-snapshot
Phylotranscriptomic analyses reveal asymmetrical gene duplication dynamics and signatures of ancient polyploidy in mints
inferred← citeshttps://doi.org/10.1093/gigascience/giaa004openalex-snapshot
Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
inferred← citeshttps://doi.org/10.1093/gigascience/giac078openalex-snapshot
Evolution of complex genome architecture in gymnosperms
inferred← citeshttps://doi.org/10.1093/gpbjnl/qzae078openalex-snapshot
Evolution of Plant Genome Size and Composition
inferred← citeshttps://doi.org/10.1093/hr/uhae077openalex-snapshot
Coping with alpine habitats: genomic insights into the adaptation strategies of Triplostegia glandulifera (Caprifoliaceae)
inferred← citeshttps://doi.org/10.1093/hr/uhaf245openalex-snapshot
The origin and evolution of HKT proteins with TrkH domain from aquatic plants to flowering plants
inferred← citeshttps://doi.org/10.1093/jxb/erz102openalex-snapshot
Evolutionary history and structure of nuclear matrix constituent proteins, the plant analogues of lamins
inferred← citeshttps://doi.org/10.1093/molbev/msaa105openalex-snapshot
Distinct Expression and Methylation Patterns for Genes with Different Fates following a Single Whole-Genome Duplication in Flowering Plants
inferred← citeshttps://doi.org/10.1093/molbev/msaa160openalex-snapshot
Asterid Phylogenomics/Phylotranscriptomics Uncover Morphological Evolutionary Histories and Support Phylogenetic Placement for Numerous Whole-Genome Duplications
inferred← citeshttps://doi.org/10.1093/molbev/msaa327openalex-snapshot
Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe
inferred← citeshttps://doi.org/10.1093/molbev/msad107openalex-snapshot
Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the Cryptic Paramecium Complex
inferred← citeshttps://doi.org/10.1093/molbev/msae153openalex-snapshot
The Possible Earliest Allopolyploidization in Tracheophytes Revealed by Phylotranscriptomics and Morphology of Selaginellaceae
inferred← citeshttps://doi.org/10.1093/molbev/msae241openalex-snapshot
Accurate Inference of the Polyploid Continuum Using Forward-Time Simulations
inferred← citeshttps://doi.org/10.1093/molbev/msw157openalex-snapshot
Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics
inferred← citeshttps://doi.org/10.1093/molbev/msw242openalex-snapshot
Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication
inferred← citeshttps://doi.org/10.1093/molbev/msz088openalex-snapshot
Inference of Ancient Whole-Genome Duplications and the Evolution of Gene Duplication and Loss Rates
inferred← citeshttps://doi.org/10.1093/pcp/pcae054openalex-snapshot
Bona Fide Plant Steroid Receptors are Innovated in Seed Plants and Angiosperms through Successive Whole-Genome Duplication Events
inferred← citeshttps://doi.org/10.1093/sysbio/syaa041openalex-snapshot
The Origin of the Legumes is a Complex Paleopolyploid Phylogenomic Tangle Closely Associated with the Cretaceous–Paleogene (K–Pg) Mass Extinction Event
inferred← citeshttps://doi.org/10.1093/sysbio/syab032openalex-snapshot
Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae)
inferred← citeshttps://doi.org/10.1093/sysbio/syad029openalex-snapshot
Phylogenomic Analyses Reveal an Allopolyploid Origin of Core Didymocarpinae (Gesneriaceae) Followed by Rapid Radiation
inferred← citeshttps://doi.org/10.1093/sysbio/syx044openalex-snapshot
Gene-Tree Reconciliation with MUL-Trees to Resolve Polyploidy Events
inferred← citeshttps://doi.org/10.1093/treephys/tpx125openalex-snapshot
Expansion of the dehydrin gene family in the Pinaceae is associated with considerable structural diversity and drought-responsive expression
inferred← citeshttps://doi.org/10.1098/rsos.231766openalex-snapshot
Accession-specific parent-of-origin dependent and independent genome dosage effects on salt tolerance in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1098/rspb.2017.0912openalex-snapshot
Constraining the timing of whole genome duplication in plant evolutionary history
inferred← citeshttps://doi.org/10.1101/042325openalex-snapshot
Transposable Element Evolution in the Allotetraploid Capsella bursa-pastoris
inferred← citeshttps://doi.org/10.1101/2020.01.05.893859openalex-snapshot
A deep dive into the ancestral chromosome number and genome size of flowering plants
inferred← citeshttps://doi.org/10.1101/2024.01.08.574748openalex-snapshot
The earliest allopolyploidization in tracheophytes revealed by phylotranscriptomics and morphology of Selaginellaceae
inferred← citeshttps://doi.org/10.1101/2024.01.17.574559openalex-snapshot
SLEDGe: Inference of ancient whole genome duplications using machine learning
inferred← citeshttps://doi.org/10.1101/2024.09.24.614835openalex-snapshot
Unveiling allopolyploidization-driven genome duplications through progressive analysis of deep genome skimming data
inferred← citeshttps://doi.org/10.1101/2025.06.03.657657openalex-snapshot
Evolutionary origin and functional diversification of plant GBF1-type ARF guanine-nucleotide exchange factors
inferred← citeshttps://doi.org/10.1101/217463openalex-snapshot
Overlooked polyploidies in lycophytes generalize their roles during the evolution of vascular plants
inferred← citeshttps://doi.org/10.1101/603191openalex-snapshot
Integrated phylogenomic analyses reveal recurrent ancestral large-scale duplication events in mosses
inferred← citeshttps://doi.org/10.1101/gr.276358.121openalex-snapshot
The western redcedar genome reveals low genetic diversity in a self-compatible conifer
inferred← citeshttps://doi.org/10.1104/pp.16.00523openalex-snapshot
Evolution of Gene Duplication in Plants
inferred← citeshttps://doi.org/10.1104/pp.16.01983openalex-snapshot
Concerted Divergence after Gene Duplication in Polycomb Repressive Complexes
inferred← citeshttps://doi.org/10.1104/pp.19.00305openalex-snapshot
Giberellic Acid-Stimulated Transcript Proteins Evolved through Successive Conjugation of Novel Motifs and Their Subfunctionalization
inferred← citeshttps://doi.org/10.1105/tpc.17.00185openalex-snapshot
The Emergence, Evolution, and Diversification of the miR390- TAS3 - ARF Pathway in Land Plants
inferred← citeshttps://doi.org/10.1105/tpc.17.00312openalex-snapshot
Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation
inferred← citeshttps://doi.org/10.1105/tpc.17.00313openalex-snapshot
Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity
inferred← citeshttps://doi.org/10.1105/tpc.18.00606openalex-snapshot
Breaking Free: The Genomics of Allopolyploidy-Facilitated Niche Expansion in White Clover
inferred← citeshttps://doi.org/10.1111/1755-0998.12986openalex-snapshot
Using transcriptome sequencing and pooled exome capture to study local adaptation in the giga‐genome of Pinus cembra
inferred← citeshttps://doi.org/10.1111/1755-0998.13199openalex-snapshot
A chromosome‐scale genome assembly of Antheraea pernyi (Saturniidae, Lepidoptera)
inferred← citeshttps://doi.org/10.1111/1755-0998.13474openalex-snapshot
Haploid, diploid, and pooled exome capture recapitulate features of biology and paralogy in two non‐model tree species
inferred← citeshttps://doi.org/10.1111/1755-0998.13628openalex-snapshot
Evaluating the accuracy of variant calling methods using the frequency of parent‐offspring genotype mismatch
inferred← citeshttps://doi.org/10.1111/ele.13402openalex-snapshot
Polyploid plants have faster rates of multivariate niche differentiation than their diploid relatives
inferred← citeshttps://doi.org/10.1111/evo.14307openalex-snapshot
Polyploidy and mutation in Arabidopsis
inferred← citeshttps://doi.org/10.1111/jeb.14062openalex-snapshot
How plants conquered land: evolution of terrestrial adaptation
inferred← citeshttps://doi.org/10.1111/jipb.12877openalex-snapshot
Recurrent genome duplication events likely contributed to both the ancient and recent rise of ferns
inferred← citeshttps://doi.org/10.1111/jipb.13078openalex-snapshot
Phylotranscriptomic insights into Asteraceae diversity, polyploidy, and morphological innovation
inferred← citeshttps://doi.org/10.1111/jipb.13224openalex-snapshot
Origin and evolution of green plants in the light of key evolutionary events
inferred← citeshttps://doi.org/10.1111/jse.12190openalex-snapshot
The Gnetales: Recent insights on their morphology, reproductive biology, chromosome numbers, biogeography, and divergence times
inferred← citeshttps://doi.org/10.1111/jse.12537openalex-snapshot
Insights into the origin and evolution of plant sigma factors
inferred← citeshttps://doi.org/10.1111/jse.12651openalex-snapshot
Phylotranscriptomics reveals extensive gene duplication in the subtribe Gentianinae (Gentianaceae)
inferred← citeshttps://doi.org/10.1111/mec.17757openalex-snapshot
The Role of Meiotic Drive in Chromosome Number Disparity Between Heterosporous and Homosporous Plants
inferred← citeshttps://doi.org/10.1111/nph.13930openalex-snapshot
Whole genome duplication in coast redwood ( Sequoia sempervirens ) and its implications for explaining the rarity of polyploidy in conifers
inferred← citeshttps://doi.org/10.1111/nph.14062openalex-snapshot
Polyploidy in a ‘living fossil’ Ginkgo biloba
inferred← citeshttps://doi.org/10.1111/nph.14066openalex-snapshot
Revisiting the phosphatidylethanolamine‐binding protein ( PEBP) gene family reveals cryptic FLOWERING LOCUS T gene homologs in gymnosperms and sheds new light on functional evolution
inferred← citeshttps://doi.org/10.1111/nph.14812openalex-snapshot
Improved transcriptome sampling pinpoints 26 ancient and more recent polyploidy events in Caryophyllales, including two allopolyploidy events
inferred← citeshttps://doi.org/10.1111/nph.15357openalex-snapshot
Widespread ancient whole‐genome duplications in Malpighiales coincide with Eocene global climatic upheaval
inferred← citeshttps://doi.org/10.1111/nph.16148openalex-snapshot
Divergence of duplicated genes by repeated partitioning of splice forms and subcellular localization
inferred← citeshttps://doi.org/10.1111/nph.16294openalex-snapshot
Darwin’s second ‘abominable mystery’: trait flexibility as the innovation leading to angiosperm diversity
inferred← citeshttps://doi.org/10.1111/nph.16396openalex-snapshot
Does reproductive assurance explain the incidence of polyploidy in plants and animals?
inferred← citeshttps://doi.org/10.1111/nph.16588openalex-snapshot
The genome of a cave plant, Primulina huaijiensis , provides insights into adaptation to limestone karst habitats
inferred← citeshttps://doi.org/10.1111/nph.16668openalex-snapshot
A deep dive into the ancestral chromosome number and genome size of flowering plants
inferred← citeshttps://doi.org/10.1111/nph.18607openalex-snapshot
Revisiting ancient polyploidy in leptosporangiate ferns
inferred← citeshttps://doi.org/10.1111/nph.19969openalex-snapshot
Polyploidy and environmental stress response: a comparative study of fern gametophytes
inferred← citeshttps://doi.org/10.1111/nph.20221openalex-snapshot
Ancient large‐scale gene duplications and diversification in bryophytes illuminate the plant terrestrialization
inferred← citeshttps://doi.org/10.1111/nph.20302openalex-snapshot
Genomic correlates of vascular plant reproductive complexity and the uniqueness of angiosperms
inferred← citeshttps://doi.org/10.1111/pbi.13498openalex-snapshot
A chromosome‐level genome assembly provides insights into ascorbic acid accumulation and fruit softening in guava (Psidium guajava)
inferred← citeshttps://doi.org/10.1111/plb.12639openalex-snapshot
How much do we know about the frequency of hybridisation and polyploidy in the Mediterranean region?
inferred← citeshttps://doi.org/10.1111/tpj.13553openalex-snapshot
Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention
inferred← citeshttps://doi.org/10.1111/tpj.13994openalex-snapshot
Pinaceae show elevated rates of gene turnover that are robust to incomplete gene annotation
inferred← citeshttps://doi.org/10.1111/tpj.14270openalex-snapshot
Limber pine (Pinus flexilis James) genetic map constructed by exome‐seq provides insight into the evolution of disease resistance and a genomic resource for genomics‐based breeding
inferred← citeshttps://doi.org/10.1111/tpj.14513openalex-snapshot
Biochemical characterization of diterpene synthases of Taiwania cryptomerioides expands the known functional space of specialized diterpene metabolism in gymnosperms
inferred← citeshttps://doi.org/10.1111/tpj.14874openalex-snapshot
The Chimonanthus salicifolius genome provides insight into magnoliid evolution and flavonoid biosynthesis
inferred← citeshttps://doi.org/10.1111/tpj.15363openalex-snapshot
Genome downsizing after polyploidy: mechanisms, rates and selection pressures
inferred← citeshttps://doi.org/10.1111/tpj.15969openalex-snapshot
Mega‐sized pericentromeric blocks of simple telomeric repeats and their variants reveal patterns of chromosome evolution in ancient Cycadales genomes
inferred← citeshttps://doi.org/10.1111/tpj.16142openalex-snapshot
Deep reticulation: the long legacy of hybridization in vascular plant evolution
inferred← citeshttps://doi.org/10.1111/tpj.16185openalex-snapshot
Tracing 100 million years of grass genome evolutionary plasticity
inferred← citeshttps://doi.org/10.1111/tpj.70320openalex-snapshot
Unraveling evolutionary pathways: allopolyploidization and introgression in polyploid Prunus (Rosaceae)
inferred← citeshttps://doi.org/10.1111/tpj.70563openalex-snapshot
The auxin gatekeepers: Evolution and diversification of the YUCCA family
inferred← citeshttps://doi.org/10.1111/tpj.70977openalex-snapshot
Adaptive evolutionary shifts in de novo birth and fixation strategy of lineage‐specific genes during plant terrestrialization
inferred← citeshttps://doi.org/10.1111/tra.12698openalex-snapshot
Recent gene duplications dominate evolutionary dynamics of adaptor protein complex subunits in embryophytes
inferred← citeshttps://doi.org/10.1111/tra.12863openalex-snapshot
Evolution of factors shaping the endoplasmic reticulum
inferred← citeshttps://doi.org/10.1126/sciadv.1603195openalex-snapshot
Revisiting ancestral polyploidy in plants
inferred← citeshttps://doi.org/10.1126/science.abf1969openalex-snapshot
Extinction at the end-Cretaceous and the origin of modern Neotropical rainforests
inferred← citeshttps://doi.org/10.1134/s2079086419060057openalex-snapshot
DNA Barcoding: Methods and Approaches
inferred← citeshttps://doi.org/10.1146/annurev-arplant-042916-041040openalex-snapshot
Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants
inferred← citeshttps://doi.org/10.1146/annurev-arplant-042916-041049openalex-snapshot
Novel Insights into Tree Biology and Genome Evolution as Revealed Through Genomics
inferred← citeshttps://doi.org/10.1146/annurev-arplant-050718-100344openalex-snapshot
Patterns and Processes of Diploidization in Land Plants
inferred← citeshttps://doi.org/10.1186/s12859-019-2670-3openalex-snapshot
WGDdetector: a pipeline for detecting whole genome duplication events using the genome or transcriptome annotations
inferred← citeshttps://doi.org/10.1186/s12862-020-01661-0openalex-snapshot
Evolutionary directions of single nucleotide substitutions and structural mutations in the chloroplast genomes of the family Calycanthaceae
inferred← citeshttps://doi.org/10.1186/s12862-020-01687-4openalex-snapshot
The speciation and adaptation of the polyploids: a case study of the Chinese Isoetes L. diploid-polyploid complex
inferred← citeshttps://doi.org/10.1186/s12864-016-3423-6openalex-snapshot
Both mechanism and age of duplications contribute to biased gene retention patterns in plants
inferred← citeshttps://doi.org/10.1186/s12864-018-4673-2openalex-snapshot
Ginkgo biloba’s footprint of dynamic Pleistocene history dates back only 390,000 years ago
inferred← citeshttps://doi.org/10.1186/s12864-019-5952-2openalex-snapshot
geneHummus: an R package to define gene families and their expression in legumes and beyond
inferred← citeshttps://doi.org/10.1186/s12864-023-09318-0openalex-snapshot
E. urophylla × E. grandis high-quality genome and comparative genomics provide insights on evolution and diversification of eucalyptus
inferred← citeshttps://doi.org/10.1186/s12864-024-09978-6openalex-snapshot
Long-insert sequence capture detects high copy numbers in a defence-related beta-glucosidase gene βglu-1 with large variations in white spruce but not Norway spruce
inferred← citeshttps://doi.org/10.1186/s12870-018-1437-8openalex-snapshot
Evolution by duplication: paleopolyploidy events in plants reconstructed by deciphering the evolutionary history of VOZ transcription factors
inferred← citeshttps://doi.org/10.1186/s12870-018-1574-0openalex-snapshot
PISTILLATA paralogs in Tarenaya hassleriana have diverged in interaction specificity
inferred← citeshttps://doi.org/10.1186/s12870-020-02574-2openalex-snapshot
Comprehensive identification and analysis of DELLA genes throughout the plant kingdom
inferred← citeshttps://doi.org/10.1186/s12870-020-2235-7openalex-snapshot
Sequential Paleotetraploidization shaped the carrot genome
inferred← citeshttps://doi.org/10.1186/s12915-017-0399-xopenalex-snapshot
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution
inferred← citeshttps://doi.org/10.1186/s12915-020-00789-1openalex-snapshot
Multi-faceted analysis provides little evidence for recurrent whole-genome duplications during hexapod evolution
inferred← citeshttps://doi.org/10.1186/s12915-022-01420-1openalex-snapshot
A high-quality Buxus austro-yunnanensis (Buxales) genome provides new insights into karyotype evolution in early eudicots
inferred← citeshttps://doi.org/10.1186/s13059-019-1650-2openalex-snapshot
Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants
inferred← citeshttps://doi.org/10.1186/s13059-026-04032-yopenalex-snapshot
Using reciprocally retained gene families to detect whole-genome multiplications in plants
inferred← citeshttps://doi.org/10.1186/s13742-016-0154-1openalex-snapshot
Draft genome of the living fossil Ginkgo biloba
inferred← citeshttps://doi.org/10.12688/f1000research.11792.1openalex-snapshot
Recent advances in understanding the roles of whole genome duplications in evolution
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