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SOAP, cleaning multiple alignments from unstable blocks

https://doi.org/10.1093/bioinformatics/17.6.573
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/mpev.1993.1015openalex-snapshot
Alignment-Ambiguous Nucleotide Sites and the Exclusion of Systematic Data
inferredcites →https://doi.org/10.1007/bf02603120openalex-snapshot
Progressive sequence alignment as a prerequisitetto correct phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/14.5.407openalex-snapshot
COFFEE: an objective function for multiple sequence alignments.
inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
inferredcites →https://doi.org/10.1093/protein/9.2.127openalex-snapshot
Quantifying the local reliability of a sequence alignment
inferredcites →https://doi.org/10.5860/choice.36-4487openalex-snapshot
The Emergence of whales: evolutionary patterns in the origin of Cetacea

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1128/9781555817497.ch36openalex-snapshot
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inferred← citeshttps://doi.org/10.1128/jvi.78.5.2537-2544.2004openalex-snapshot
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inferred← citeshttps://doi.org/10.1139/g07-116openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12859-015-0516-1openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.pone.0030288openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.pone.0031355openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.pone.0046662openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.pone.0162579openalex-snapshot
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inferred← citeshttps://doi.org/10.1534/genetics.106.060657openalex-snapshot
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inferred← citeshttps://doi.org/10.1645/ge-1724.1openalex-snapshot
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inferred← citeshttps://doi.org/10.2216/07-51.1openalex-snapshot
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inferred← citeshttps://doi.org/10.2307/3762174openalex-snapshot
Leptographium pruni, sp. nov. from Bark Beetle-Infested Prunus jamasakura in Japan
inferred← citeshttps://doi.org/10.2983/0730-8000(2007)26[25:pranss]2.0.co;2openalex-snapshot
PHYLOGENETIC RELATIONSHIPS AMONG NINE SCALLOP SPECIES (BIVALVIA: PECTINIDAE) INFERRED FROM NUCLEOTIDE SEQUENCES OF ONE MITOCHONDRIAL AND THREE NUCLEAR GENE REGIONS
inferred← citeshttps://doi.org/10.3109/19401736.2011.624611openalex-snapshot
Extreme mitochondrial evolution in the ctenophoreMnemiopsis leidyi: Insight from mtDNA and the nuclear genome
inferred← citeshttps://doi.org/10.3732/ajb.89.11.1852openalex-snapshot
Diversity and host specificity of endophytic Rhizoctonia ‐like fungi from tropical orchids
inferred← citeshttps://doi.org/10.5507/fot.2010.002openalex-snapshot
Phylogenetic position of Ooplanctella planoconvexa gen. et comb. nova and Echinocoleum elegans (Oocystaceae, Trebouxiophyceae, Chlorophyta).
inferred← citeshttps://doi.org/10.5507/fot.2014.004openalex-snapshot
Planktochlorella nurekis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid green alga carrying significant biotechnological potential.
inferred← citeshttps://doi.org/10.70675/35114307zb5a9z4d3az969az6fc47b55e2d6openalex-snapshot
Phylogeny and evolution of a highly diversified catfish subfamily : the Loricariinae (Siluriformes, Loricariidae)
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