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Evolution of monoblepharidalean fungi based on complete mitochondrial genome sequences
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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PHYLIP ( PHYLogeny Inference Package)
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A 7.1 kb linear DNA molecule of Theileria parva has scrambled rDNA sequences and open reading frames for mitochondrially encoded proteins.
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Relationships of the Insect-Pathogenic Order Entomophthorales (Zygomycota, Fungi) Based on Phylogenetic Analyses of Nuclear Small Subunit Ribosomal DNA Sequences (SSU rDNA)
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Deficiency of 1-Methylguanosine in tRNA from Salmonella typhimurium Induces Frameshifting by Quadruplet Translocation
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Structural Analysis of Mitochondrial DNA Molecules from Fungi and Plants Using Moving Pictures and Pulsed-field Gel Electrophoresis
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The Mitochondrial DNA of Allomyces macrogynus: The Complete Genomic Sequence from an Ancestral Fungus
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Expanding the genetic code: selection of efficient suppressors of four-base codons and identification of “shifty” four-base codons with a library approach in Escherichia coli11Edited by M. Gottesman
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Ribosomal DNA and Resolution of Branching Order among the Ascomycota: How Many Nucleotides Are Enough?
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Molecular phylogeny of Allomyces macrogynus: Congruency between nuclear ribosomal RNA- and mitochondrial protein-based trees
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Mitochondrial DNA of the coral sarcophyton glaucum contains a gene for a homologue of bacterial muts: A possible case of gene transfer from the nucleus to the mitochondrion
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The Mitochondrial Genome of Acropora tenuis (Cnidaria; Scleractinia) Contains a Large Group I Intron and a Candidate Control Region
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The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression
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Scrambled ribosomal RNA gene pieces in chlamydomonas reinhardtii mitochondrial DNA
inferredcites →https://doi.org/10.1016/1055-7903(92)90020-hopenalex-snapshot
Evolutionary relationships within the fungi: Analyses of nuclear small subunit rRNA sequences
inferredcites →https://doi.org/10.1016/s0021-9258(17)44019-1openalex-snapshot
Identification of multiple transcriptional initiation sites on the yeast mitochondrial genome by in vitro capping with guanylyltransferase.
inferredcites →https://doi.org/10.1016/s0021-9258(19)89232-3openalex-snapshot
A discontinuous small subunit ribosomal RNA in Tetrahymena pyriformis mitochondria.
inferredcites →https://doi.org/10.1016/s0168-9525(01)02272-7openalex-snapshot
Molecular phylogenetics: state-of-the-art methods for looking into the past
inferredcites →https://doi.org/10.1016/s0300-9084(82)80349-0openalex-snapshot
Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure
inferredcites →https://doi.org/10.1016/s0968-0004(00)01612-1openalex-snapshot
A novel motif for identifying Rps3 homologs in fungal mitochondrial genomes
inferredcites →https://doi.org/10.1038/387493a0openalex-snapshot
An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
inferredcites →https://doi.org/10.1073/pnas.77.6.3539openalex-snapshot
Predicting coding function from nucleotide sequence or survival of "fitness" of tRNA.
inferredcites →https://doi.org/10.1073/pnas.85.8.2677openalex-snapshot
Specific translational activation by nuclear gene products occurs in the 5' untranslated leader of a yeast mitochondrial mRNA.
inferredcites →https://doi.org/10.1073/pnas.93.11.5253openalex-snapshot
Expression of a recoded nuclear gene inserted into yeast mitochondrial DNA is limited by mRNA-specific translational activation.
inferredcites →https://doi.org/10.1078/1434-4610-00023openalex-snapshot
Hyaloraphidium curvatum is not a Green Alga, but a Lower Fungus; Amoebidium parasiticum is not a Fungus, but a Member of the DRIPs
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Phylogenetic Divergence of the Entomophthoralean Fungi: Evidence from Nuclear 18S Ribosomal RNA Gene Sequences
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An Approximately Unbiased Test of Phylogenetic Tree Selection
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PAML: a program package for phylogenetic analysis by maximum likelihood
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CONSEL: for assessing the confidence of phylogenetic tree selection
inferredcites →https://doi.org/10.1093/bioinformatics/17.6.573openalex-snapshot
SOAP, cleaning multiple alignments from unstable blocks
inferredcites →https://doi.org/10.1093/emboj/cdg072openalex-snapshot
In vivo evidence for the prokaryotic model of extended codon–anticodon interaction in translation initiation
inferredcites →https://doi.org/10.1093/genetics/133.3.509openalex-snapshot
PET111 acts in the 5'-leader of the Saccharomyces cerevisiae mitochondrial COX2 mRNA to promote its translation.
inferredcites →https://doi.org/10.1093/genetics/147.1.87openalex-snapshot
In Vivo Analysis of Saccharomyces cerevisiae COX2 mRNA 5′-Untranslated Leader Functions in Mitochondrial Translation Initiation and Translational Activation
inferredcites →https://doi.org/10.1093/genetics/148.3.1091openalex-snapshot
The Mitochondrial Genome of the Sea Anemone Metridium senile (Cnidaria): Introns, a Paucity of tRNA Genes, and a Near-Standard Genetic Code
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A nonanucleotide sequence involved in promotion of ribosomal RNA synthesis and RNA priming of DNA replication on yeast mitochondria
inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
inferredcites →https://doi.org/10.1093/nar/25.3.626openalex-snapshot
Mitochondrial tRNAs in the lower fungus Spizellomyces punctatus: tRNA editing and UAG 'stop' codons recognized as leucine
inferredcites →https://doi.org/10.1093/nar/27.11.2416openalex-snapshot
The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum have short A tails
inferredcites →https://doi.org/10.1093/nar/gkg134openalex-snapshot
A comparison of three fission yeast mitochondrial genomes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004084openalex-snapshot
Hyaloraphidium curvatum: A Linear Mitochondrial Genome, tRNA Editing, and an Evolutionary Link to Lower Fungi
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025664openalex-snapshot
Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025808openalex-snapshot
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026092openalex-snapshot
Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026235openalex-snapshot
Evidence from Beta-Tubulin Phylogeny that Microsporidia Evolved from Within the Fungi
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026274openalex-snapshot
Double-Hairpin Elements in the Mitochondrial DNA of Allomyces: Evidence for Mobility
inferredcites →https://doi.org/10.1101/gr.10.6.819openalex-snapshot
The Complete Mitochondrial DNA Sequence of Scenedesmus obliquus Reflects an Intermediate Stage in the Evolution of the Green Algal Mitochondrial Genome
inferredcites →https://doi.org/10.1105/tpc.11.9.1675openalex-snapshot
Complete Sequence of the Mitochondrial DNA of the Red Alga Porphyra purpurea: Cyanobacterial Introns and Shared Ancestry of Red and Green Algae
inferredcites →https://doi.org/10.1105/tpc.11.9.1717openalex-snapshot
The Complete Mitochondrial DNA Sequences of Nephroselmis olivacea and Pedinomonas minor: Two Radically Different Evolutionary Patterns within Green Algae
inferredcites →https://doi.org/10.1111/j.1558-5646.1985.tb00420.xopenalex-snapshot
CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
inferredcites →https://doi.org/10.1126/science.2471265openalex-snapshot
Prevention of Translational Frameshifting by the Modified Nucleoside 1-Methylguanosine
inferredcites →https://doi.org/10.1126/science.271.5248.470openalex-snapshot
Determining Divergence Times of the Major Kingdoms of Living Organisms with a Protein Clock
inferredcites →https://doi.org/10.1126/science.290.5493.972openalex-snapshot
A Kingdom-Level Phylogeny of Eukaryotes Based on Combined Protein Data
inferredcites →https://doi.org/10.1126/science.8430334openalex-snapshot
Editing of Transfer RNAs in Acanthamoeba castellanii Mitochondria
inferredcites →https://doi.org/10.1126/science.8469985openalex-snapshot
Monophyletic Origins of the Metazoa: an Evolutionary Link with Fungi
inferredcites →https://doi.org/10.1139/b00-009openalex-snapshot
Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics
inferredcites →https://doi.org/10.1201/9780203027356.ch12openalex-snapshot
Fungal Evolution Meets Fungal Genomics
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.3897/imafungus.16.138363zenodo-depositor-declared
Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution
inferred← citeshttps://doi.org/10.1007/978-1-4614-1531-2_113openalex-snapshot
Mitochondrial Genomes in Fungi
inferred← citeshttps://doi.org/10.1007/978-1-4614-6436-5_113-2openalex-snapshot
Mitochondrial Genomes in Fungi
inferred← citeshttps://doi.org/10.1007/978-3-319-78190-7_7openalex-snapshot
Mechanisms and Evolution of tRNA 5′-Editing in Mitochondria
inferred← citeshttps://doi.org/10.1007/978-3-642-22380-8_17openalex-snapshot
Mitochondrial tRNA Structure, Identity, and Evolution of the Genetic Code
inferred← citeshttps://doi.org/10.1007/978-3-642-55318-9_6openalex-snapshot
6 Chytridiomycota, Monoblepharidomycota, and Neocallimastigomycota
inferred← citeshttps://doi.org/10.1007/b96830openalex-snapshot
Mitochondrial genome evolution: the origin of mitochondria and of eukaryotes
inferred← citeshttps://doi.org/10.1007/s00239-006-0284-7openalex-snapshot
The Mechanisms of Codon Reassignments in Mitochondrial Genetic Codes
inferred← citeshttps://doi.org/10.1007/s00239-009-9291-9openalex-snapshot
Molecular Evolution of the mtDNA Encoded rps3 Gene Among Filamentous Ascomycetes Fungi with an Emphasis on the Ophiostomatoid Fungi
inferred← citeshttps://doi.org/10.1007/s00239-011-9461-4openalex-snapshot
Reconstructing the Fungal Tree of Life Using Phylogenomics and a Preliminary Investigation of the Distribution of Yeast Prion-Like Proteins in the Fungal Kingdom
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Mitochondrial genome of the entomophthoroid fungus Conidiobolus heterosporus provides insights into evolution of basal fungi
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The complete mitochondrial genome of the vascular wilt fungus Verticillium dahliae: a novel gene order for Verticillium and a diagnostic tool for species identification
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A Comparative Description of Dermatophyte Genomes: A State-of-the-Art Review
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Characterization and phylogenetic analysis of the complete mitochondrial genome sequence of Auricularia villosula, an edible wild mushroom in China
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The analysis of the complete mitochondrial genome of Lecanicillium muscarium (synonym Verticillium lecanii) suggests a minimum common gene organization in mtDNAs of Sordariomycetes: phylogenetic implications
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Comparative analysis of Fusarium mitochondrial genomes reveals a highly variable region that encodes an exceptionally large open reading frame
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The mitochondrial view of Blastocladiella emersonii
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The complete mitochondrial genome of Penicillium expansum: Insights into the fungal evolution and phylogeny
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The complete mitochondrial genomes of five important medicinal Ganoderma species: Features, evolution, and phylogeny
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Evolution of the mitochondrial genome: protist connections to animals, fungi and plants
inferred← citeshttps://doi.org/10.1016/j.mib.2005.06.009openalex-snapshot
Fungal evolution: the case of the vanishing mitochondrion
inferred← citeshttps://doi.org/10.1016/j.mycres.2007.03.004openalex-snapshot
A higher-level phylogenetic classification of the Fungi
inferred← citeshttps://doi.org/10.1016/j.mycres.2008.01.016openalex-snapshot
Mitochondrial gene sequences alone or combined with ITS region sequences provide firm molecular criteria for the classification of Lecanicillium species
inferred← citeshttps://doi.org/10.1016/j.mycres.2008.04.014openalex-snapshot
The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109kb in size and contains a stable integrated plasmid
inferred← citeshttps://doi.org/10.1016/j.tig.2003.10.012openalex-snapshot
Mitochondrial genomes: anything goes
inferred← citeshttps://doi.org/10.1016/j.tim.2005.03.007openalex-snapshot
Endolithic fungi in marine ecosystems
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.04.037openalex-snapshot
Mt-rps3 is an ancient gene which provides insight into the evolution of fungal mitochondrial genomes
inferred← citeshttps://doi.org/10.1016/s1874-5334(03)80010-2openalex-snapshot
Evolution of the Fungi and their Mitochondrial Genomes
inferred← citeshttps://doi.org/10.1017/s0953756205003345openalex-snapshot
Molecular and immunochemical phylogeny of Verticillium species
inferred← citeshttps://doi.org/10.1017/s0953756205003977openalex-snapshot
Mitochondrial large ribosomal subunit sequences are homogeneous within isolates of Glomus (arbuscular mycorrhizal fungi, Glomeromycota)
inferred← citeshttps://doi.org/10.1073/pnas.0602076103openalex-snapshot
Mitochondrial genome of Trichoplax adhaerens supports Placozoa as the basal lower metazoan phylum
inferred← citeshttps://doi.org/10.1074/jbc.m411273200openalex-snapshot
In Vitro Characterization of a tRNA Editing Activity in the Mitochondria of Spizellomyces punctatus, a Chytridiomycete Fungus
inferred← citeshttps://doi.org/10.1080/10635150500234609openalex-snapshot
An Empirical Assessment of Long-Branch Attraction Artefacts in Deep Eukaryotic Phylogenomics
inferred← citeshttps://doi.org/10.1080/10635150500354829openalex-snapshot
Calculating the Evolutionary Rates of Different Genes: A Fast, Accurate Estimator with Applications to Maximum Likelihood Phylogenetic Analysis
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Rhizophydium brooksianumsp. nov., a multipored chytrid from soil
inferred← citeshttps://doi.org/10.1093/gbe/evaa126openalex-snapshot
The Coevolution of Fungal Mitochondrial Introns and Their Homing Endonucleases (GIY-YIG and LAGLIDADG)
inferred← citeshttps://doi.org/10.1093/molbev/msn221openalex-snapshot
Phylogenomic Analyses Support the Monophyly of Taphrinomycotina, including Schizosaccharomyces Fission Yeasts
inferred← citeshttps://doi.org/10.1093/molbev/mss088openalex-snapshot
Group I Intron–Mediated Trans-splicing in Mitochondria of Gigaspora rosea and a Robust Phylogenetic Affiliation of Arbuscular Mycorrhizal Fungi with Mortierellales
inferred← citeshttps://doi.org/10.1093/molbev/mss274openalex-snapshot
Mitochondrial DNA of Clathrina clathrus (Calcarea, Calcinea): Six Linear Chromosomes, Fragmented rRNAs, tRNA Editing, and a Novel Genetic Code
inferred← citeshttps://doi.org/10.1093/nar/gkaf1419openalex-snapshot
Comparative mitogenomics of kingdom Fungi – evolutionary insights and metagenomic applications
inferred← citeshttps://doi.org/10.1093/nar/gki199openalex-snapshot
Comparative mitochondrial genomics in zygomycetes: bacteria-like RNase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperms
inferred← citeshttps://doi.org/10.1093/nar/gki757openalex-snapshot
The Rhodomonas salina mitochondrial genome: bacteria-like operons, compact gene arrangement and complex repeat region
inferred← citeshttps://doi.org/10.1093/nar/gkl327openalex-snapshot
Complete DNA sequences of the mitochondrial genomes of the pathogenic yeasts Candida orthopsilosis and Candida metapsilosis: insight into the evolution of linear DNA genomes from mitochondrial telomere mutants
inferred← citeshttps://doi.org/10.1093/nar/gkl770openalex-snapshot
TBestDB: a taxonomically broad database of expressed sequence tags (ESTs)
inferred← citeshttps://doi.org/10.1093/nar/gkq883openalex-snapshot
Systematically fragmented genes in a multipartite mitochondrial genome
inferred← citeshttps://doi.org/10.1098/rsbl.2003.0058openalex-snapshot
Evidence for Golgi bodies in proposed 'Golgi-lacking' lineages
inferred← citeshttps://doi.org/10.1101/gad.1148603openalex-snapshot
tRNA His maturation: An essential yeast protein catalyzes addition of a guanine nucleotide to the 5′ end of tRNA His
inferred← citeshttps://doi.org/10.1111/j.1574-6968.2007.01048.xopenalex-snapshot
The mitochondrial genome of the Basidiomycete fungusPleurotus ostreatus(oyster mushroom)
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The Missing Fungi: New Insights from Culture-Independent Molecular Studies of Soil
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RNA editing: Classical cases and outlook of new technologies
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Mitochondria of Protists
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Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes.
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Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes
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The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen
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The diversity of mtDNA rns introns among strains of Ophiostoma piliferum, Ophiostoma pluriannulatum and related species
inferred← citeshttps://doi.org/10.1261/rna.5880403openalex-snapshot
Mitochondrial RNase P RNAs in ascomycete fungi: Lineage-specific variations in RNA secondary structure
inferred← citeshttps://doi.org/10.1261/rna.7330504openalex-snapshot
Origin, evolution, and mechanism of 5′ tRNA editing in chytridiomycete fungi
inferred← citeshttps://doi.org/10.12688/f1000research.21490.1openalex-snapshot
Recent advances in understanding mitochondrial genome diversity
inferred← citeshttps://doi.org/10.1371/journal.pgen.0030013openalex-snapshot
Comparative Genomics of Large Mitochondria in Placozoans
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Complete Mitochondrial Genome of the Medicinal Mushroom Ganoderma lucidum
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Characterization and Phylogenetic Analysis of the Mitochondrial Genome of Glarea lozoyensis Indicates High Diversity within the Order Helotiales
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The 203 kbp Mitochondrial Genome of the Phytopathogenic Fungus Sclerotinia borealis Reveals Multiple Invasions of Introns and Genomic Duplications
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Intron Derived Size Polymorphism in the Mitochondrial Genomes of Closely Related Chrysoporthe Species
inferred← citeshttps://doi.org/10.1371/journal.pone.0185545openalex-snapshot
The mitochondrial genome of the plant-pathogenic fungus Stemphylium lycopersici uncovers a dynamic structure due to repetitive and mobile elements
inferred← citeshttps://doi.org/10.14201/gredos.76512openalex-snapshot
Estudio a microscopía electrónica de ciertas especies de dermatofitos zoofílicos
inferred← citeshttps://doi.org/10.18174/476563openalex-snapshot
From metagenome to gene : Identification of the first Synchytrium endobioticum effector through comparative genomics
inferred← citeshttps://doi.org/10.2307/3761998openalex-snapshot
Rhizophydium brooksianum sp. nov., a Multipored Chytrid from Soil
inferred← citeshttps://doi.org/10.2323/jgam.51.267openalex-snapshot
Evolutionary relationships among basal fungi (Chytridiomycota and Zygomycota): Insights from molecular phylogenetics
inferred← citeshttps://doi.org/10.3389/fmicb.2018.02079openalex-snapshot
Comparison of the Mitochondrial Genome Sequences of Six Annulohypoxylon stygium Isolates Suggests Short Fragment Insertions as a Potential Factor Leading to Larger Genomic Size
inferred← citeshttps://doi.org/10.3389/fmicb.2020.00978openalex-snapshot
Fungal Mitogenomes: Relevant Features to Planning Plant Disease Management
inferred← citeshttps://doi.org/10.3390/ijms252212140openalex-snapshot
Assembly, Annotation, and Comparative Analysis of Mitochondrial Genomes in Trichoderma
inferred← citeshttps://doi.org/10.35537/10915/73593openalex-snapshot
Mancha gris de la hoja del tomate: identificación, biología y genómica del agente etiológico
inferred← citeshttps://doi.org/10.3732/ajb.91.10.1446openalex-snapshot
Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits
inferred← citeshttps://doi.org/10.3852/09-198openalex-snapshot
Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens Phakopsora pachyrhizi and P. meibomiae
inferred← citeshttps://doi.org/10.3852/14-275openalex-snapshot
Cytology and molecular phylogenetics of Monoblepharidomycetes provide evidence for multiple independent origins of the hyphal habit in the Fungi
inferred← citeshttps://doi.org/10.47749/t/unicamp.2006.379550openalex-snapshot
Genoma de Moniliophthora perniciosa
inferred← citeshttps://doi.org/10.5451/unibas-004256266openalex-snapshot
Development of new molecular markers for phylogeny and molecular identification of arbuscular mycorrhizal fungi (glomeromycota)
inferred← citeshttps://doi.org/10.5539/jas.v4n6p290openalex-snapshot
Molecular Phylogenetic Identification of Plant-pathogenic Fungi Isolated from Two Medicinal Atractylodes macrocephala Koidz Species
inferred← citeshttps://doi.org/10.70675/39ff2c87z1146z4acez955fz08bc044f811fopenalex-snapshot
Taxonomie des dermatophytes du complexe Trichophyton rubrum
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