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ARIA2: Automated NOE assignment and data integration in NMR structure calculation

https://doi.org/10.1093/bioinformatics/btl589

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Refinement of protein structures in explicit solvent

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The CCPN data model for NMR spectroscopy: Development of a software pipeline

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Calculation of Protein Structures with Ambiguous Distance Restraints. Automated Assignment of Ambiguous NOE Crosspeaks and Disulphide Connectivities

inferredcites →https://doi.org/10.1006/jmbi.1997.1044openalex-snapshot

Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from β-spectrin 1 1Edited by P. E. Wright

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Protein NMR Structure Determination with Automated NOE Assignment Using the New Software CANDID and the Torsion Angle Dynamics Algorithm DYANA

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Quantitative Evaluation of Experimental NMR Restraints

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Protein NMR spectroscopy in structural genomics.

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A framework for scientific data modeling and automated software development

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

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Structural Basis of Protein Kinase Cα Regulation by the C-Terminal Tail

inferred← citeshttps://doi.org/10.1016/j.bpj.2020.07.023openalex-snapshot

Interplay of Disorder and Sequence Specificity in the Formation of Stable Dynein-Dynactin Complexes

inferred← citeshttps://doi.org/10.1016/j.cell.2019.07.014openalex-snapshot

A Cell-Penetrating Scorpion Toxin Enables Mode-Specific Modulation of TRPA1 and Pain

inferred← citeshttps://doi.org/10.1016/j.celrep.2012.10.010openalex-snapshot

Structures of the Sgt2/SGTA Dimerization Domain with the Get5/UBL4A UBL Domain Reveal an Interaction that Forms a Conserved Dynamic Interface

inferred← citeshttps://doi.org/10.1016/j.celrep.2020.107930openalex-snapshot

Pseudo-RNA-Binding Domains Mediate RNA Structure Specificity in Upstream of N-Ras

inferred← citeshttps://doi.org/10.1016/j.chembiol.2010.01.012openalex-snapshot

Small-Molecule Ligands of GD2 Ganglioside, Designed from NMR Studies, Exhibit Induced-Fit Binding and Bioactivity

inferred← citeshttps://doi.org/10.1016/j.chembiol.2016.07.010openalex-snapshot

Basis of Mutual Domain Inhibition in a Bacterial Response Regulator

inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2025.108446openalex-snapshot

Insights from computational studies about structural determinants of steroidal inhibitors in 5-alpha-reductase type II

inferred← citeshttps://doi.org/10.1016/j.csbj.2017.04.001openalex-snapshot

Modern Technologies of Solution Nuclear Magnetic Resonance Spectroscopy for Three-dimensional Structure Determination of Proteins Open Avenues for Life Scientists

inferred← citeshttps://doi.org/10.1016/j.csbj.2021.04.020openalex-snapshot

How to assess the structural dynamics of transcription factors by integrating sparse NMR and EPR constraints with molecular dynamics simulations

inferred← citeshttps://doi.org/10.1016/j.csbj.2021.05.009openalex-snapshot

Endogenous modulators of neurotrophin signaling: Landscape of the transient ATP-NGF interactions

inferred← citeshttps://doi.org/10.1016/j.dib.2015.12.004openalex-snapshot

NOE distance and dihedral angle restraints to calculate the solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus

inferred← citeshttps://doi.org/10.1016/j.dib.2016.06.024openalex-snapshot

Data describing the solution structure of the WW3* domain from human Nedd4-1

inferred← citeshttps://doi.org/10.1016/j.ejmech.2014.06.025openalex-snapshot

Molecular modeling toward selective inhibitors of dihydrofolate reductase from the biological warfare agent Bacillus anthracis

inferred← citeshttps://doi.org/10.1016/j.ejmech.2020.112634openalex-snapshot

The HIV-1 maturation inhibitor, EP39, interferes with the dynamic helix-coil equilibrium of the CA-SP1 junction of Gag

inferred← citeshttps://doi.org/10.1016/j.febslet.2008.07.020openalex-snapshot

The three‐dimensional structure of CsmA: A small antenna protein from the green sulfur bacterium Chlorobium tepidum

inferred← citeshttps://doi.org/10.1016/j.febslet.2013.10.033openalex-snapshot

Solution NMR studies of the plant peptide hormone CEP inform function

inferred← citeshttps://doi.org/10.1016/j.ibmb.2022.103876openalex-snapshot

Venomics Survey of Six Myrmicine Ants Provides Insights into the Molecular and Structural Diversity of Their Peptide Toxins

inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2023.128078openalex-snapshot

Toward the mechanism of jarastatin (rJast) inhibition of the integrin αVβ3

inferred← citeshttps://doi.org/10.1016/j.isci.2020.101858openalex-snapshot

Long-Range Coupled Motions Underlie Ligand Recognition by a Chemokine Receptor

inferred← citeshttps://doi.org/10.1016/j.isci.2023.106157openalex-snapshot

The mechanism underlying toxicity of a venom peptide against insects reveals how ants are master at disrupting membranes

inferred← citeshttps://doi.org/10.1016/j.jbc.2021.101370openalex-snapshot

Fungal effector SIB1 of Colletotrichum orbiculare has unique structural features and can suppress plant immunity in Nicotiana benthamiana

inferred← citeshttps://doi.org/10.1016/j.jbc.2022.102321openalex-snapshot

Cleavage of mitochondrial homeostasis regulator PGAM5 by the intramembrane protease PARL is governed by transmembrane helix dynamics and oligomeric state

inferred← citeshttps://doi.org/10.1016/j.jbc.2023.103056openalex-snapshot

Release of immunomodulatory peptides at bacterial membrane interfaces as a novel strategy to fight microorganisms

inferred← citeshttps://doi.org/10.1016/j.jbc.2024.107903openalex-snapshot

Structural basis of nucleic acid recognition by the N-terminal cold shock domain of the plant glycine-rich protein AtGRP2

inferred← citeshttps://doi.org/10.1016/j.jbc.2026.112203openalex-snapshot

Structural basis of the protein kinase PKN1 HR1 domain oligomerization and differential regulation by RhoA and Rac1

inferred← citeshttps://doi.org/10.1016/j.jmb.2007.11.072openalex-snapshot

Comparative Analysis of Structural and Dynamic Properties of the Loaded and Unloaded Hemophore HasA: Functional Implications

inferred← citeshttps://doi.org/10.1016/j.jmb.2008.02.006openalex-snapshot

Three-dimensional Solution Structure and Conformational Plasticity of the N-terminal Scavenger Receptor Cysteine-rich Domain of Human CD5

inferred← citeshttps://doi.org/10.1016/j.jmb.2008.06.042openalex-snapshot

New Insights into Multiple Coagulation Factor Deficiency from the Solution Structure of Human MCFD2

inferred← citeshttps://doi.org/10.1016/j.jmb.2009.02.065openalex-snapshot

Structure of the Third Intracellular Loop of the Vasopressin V2 Receptor and Conformational Changes upon Binding to gC1qR

inferred← citeshttps://doi.org/10.1016/j.jmb.2009.06.029openalex-snapshot

NMR Structure of the N-Terminal Domain of Capsid Protein from the Mason–Pfizer Monkey Virus

inferred← citeshttps://doi.org/10.1016/j.jmb.2010.03.022openalex-snapshot

Structure of the Minimal Interface Between ApoE and LRP

inferred← citeshttps://doi.org/10.1016/j.jmb.2010.10.047openalex-snapshot

A Novel Structure of an Antikinase and its Inhibitor

inferred← citeshttps://doi.org/10.1016/j.jmb.2012.01.058openalex-snapshot

The NOXO1β PX Domain Preferentially Targets PtdIns(4,5)P2 and PtdIns(3,4,5)P3

inferred← citeshttps://doi.org/10.1016/j.jmb.2012.05.010openalex-snapshot

Autoinhibition of ETV6 (TEL) DNA Binding: Appended Helices Sterically Block the ETS Domain

inferred← citeshttps://doi.org/10.1016/j.jmb.2014.01.007openalex-snapshot

The C-Terminal Domain of SRA1p Has a Fold More Similar to PRP18 than to an RRM and Does Not Directly Bind to the SRA1 RNA STR7 Region

inferred← citeshttps://doi.org/10.1016/j.jmb.2014.12.023openalex-snapshot

Structural Basis of Dynamic Membrane Recognition by trans-Golgi Network Specific FAPP Proteins

inferred← citeshttps://doi.org/10.1016/j.jmb.2015.03.010openalex-snapshot

The Pentameric Nucleoplasmin Fold Is Present in Drosophila FKBP39 and a Large Number of Chromatin-Related Proteins

inferred← citeshttps://doi.org/10.1016/j.jmb.2020.01.023openalex-snapshot

Integrating Non-NMR Distance Restraints to Augment NMR Depiction of Protein Structure and Dynamics

inferred← citeshttps://doi.org/10.1016/j.jmb.2021.167009openalex-snapshot

Solution Structure of the C-terminal Domain of A20, the Missing Brick for the Characterization of the Interface between Vaccinia Virus DNA Polymerase and its Processivity Factor

inferred← citeshttps://doi.org/10.1016/j.jmb.2022.167871openalex-snapshot

Structural Model of a Porphyromonas gingivalis type IX Secretion System Shuttle Complex

inferred← citeshttps://doi.org/10.1016/j.jmb.2023.168218openalex-snapshot

Permissive Conformations of a Transmembrane Helix Allow Intramembrane Proteolysis by γ-Secretase

inferred← citeshttps://doi.org/10.1016/j.jmb.2025.169302openalex-snapshot

NMR in the Age of Modern Biomedical Research and Drug Discovery

inferred← citeshttps://doi.org/10.1016/j.jmr.2011.08.039openalex-snapshot

Generative probabilistic models extend the scope of inferential structure determination

inferred← citeshttps://doi.org/10.1016/j.jsb.2012.09.005openalex-snapshot

The C-terminal domain of the Uup protein is a DNA-binding coiled coil motif

inferred← citeshttps://doi.org/10.1016/j.jsb.2018.05.009openalex-snapshot

The protofilament architecture of a de novo designed coiled coil-based amyloidogenic peptide

inferred← citeshttps://doi.org/10.1016/j.jsb.2021.107715openalex-snapshot

NMR structure and dynamics of Q4DY78, a conserved kinetoplasid-specific protein from Trypanosoma cruzi

inferred← citeshttps://doi.org/10.1016/j.molcel.2010.03.021openalex-snapshot

Molecular Interplay of the Noncoding RNA ANRIL and Methylated Histone H3 Lysine 27 by Polycomb CBX7 in Transcriptional Silencing of INK4a

inferred← citeshttps://doi.org/10.1016/j.molcel.2010.09.009openalex-snapshot

Structural Basis for Translational Stalling by Human Cytomegalovirus and Fungal Arginine Attenuator Peptide

inferred← citeshttps://doi.org/10.1016/j.molcel.2010.11.028openalex-snapshot

Conformational Conversion during Amyloid Formation at Atomic Resolution

inferred← citeshttps://doi.org/10.1016/j.molcel.2023.07.002openalex-snapshot

FUBP1 is a general splicing factor facilitating 3′ splice site recognition and splicing of long introns

inferred← citeshttps://doi.org/10.1016/j.molstruc.2011.02.042openalex-snapshot

Topology and dynamics of the interaction between 5-nitroimidazole radiosensitizers and duplex DNA studied by a combination of docking, molecular dynamic simulations and NMR spectroscopy

inferred← citeshttps://doi.org/10.1016/j.molstruc.2026.147153openalex-snapshot

A comparative analysis of structural and functional attributes of four analog antimicrobial peptides derived from scorpion venom

inferred← citeshttps://doi.org/10.1016/j.msec.2020.111581openalex-snapshot

Characterization of novel human intragenic antimicrobial peptides, incorporation and release studies from ureasil-polyether hybrid matrix

inferred← citeshttps://doi.org/10.1016/j.peptides.2008.03.014openalex-snapshot

The key-role of tyrosine 155 in the mechanism of prion transconformation as highlighted by a study of sheep mutant peptides

inferred← citeshttps://doi.org/10.1016/j.peptides.2011.04.008openalex-snapshot

A novel conotoxin, qc16a, with a unique cysteine framework and folding

inferred← citeshttps://doi.org/10.1016/j.pnmrs.2010.10.001openalex-snapshot

Structure determination and dynamics of protein–RNA complexes by NMR spectroscopy

inferred← citeshttps://doi.org/10.1016/j.pnmrs.2014.08.001openalex-snapshot

NMR structure validation in relation to dynamics and structure determination

inferred← citeshttps://doi.org/10.1016/j.pnmrs.2016.10.001openalex-snapshot

NMR solution structure determination of large RNA-protein complexes

inferred← citeshttps://doi.org/10.1016/j.pnmrs.2022.07.001openalex-snapshot

Zinc finger structure determination by NMR: Why zinc fingers can be a handful

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