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Biomartr: genomic data retrieval with R

https://doi.org/10.1093/bioinformatics/btw821
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-540-35306-5_10openalex-snapshot
SeqinR 1.0-2: A Contributed Package to the R Project for Statistical Computing Devoted to Biological Sequences Retrieval and Analysis
inferredcites →https://doi.org/10.1093/bioinformatics/bti525openalex-snapshot
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
inferredcites →https://doi.org/10.1093/nar/gkl842openalex-snapshot
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
inferredcites →https://doi.org/10.1093/nar/gks1195openalex-snapshot
GenBank
inferredcites →https://doi.org/10.1093/nar/gkv1157openalex-snapshot
Ensembl 2016
inferredcites →https://doi.org/10.1186/1471-2164-10-22openalex-snapshot
BioMart – biological queries made easy

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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A Deep Dive into the Globin Superfamily of Sharks, Skates, and Rays: Contrasting Patterns of Gene Loss and Retention Relative to Bony Vertebrates
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Phylotranscriptomic Insights into the Diversification of EndothermicThunnusTunas
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MTR3D: identifying regions within protein tertiary structures under purifying selection
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Control of retrotransposon-driven activation of the interferon response by the double-stranded RNA binding protein DGCR8
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Impact of the SnRK1 protein kinase on sucrose homeostasis and the transcriptome during the diel cycle
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Wnt/PCP-primed intestinal stem cells directly differentiate into enteroendocrine or Paneth cells
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ORFik: a comprehensive R toolkit for the analysis of translation
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Comparative meta-proteomic analysis for the identification of novel plasmodesmata proteins and regulatory cues
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Identification and Characterization of novel long non-coding RNAs in vascular smooth cells
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regulaTER: An R Library to Study the Regulatory Roles of Transposable Elements
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Genome-Wide Insights into the Genes and Pathways Shaping Human Foveal Development
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Genetic analysis of iris pigmentation in Swiss pig breeds identifies a missense KITLG variant as a potential causal factor for pale and heterochromatic irises
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The XIST lncRNA is a sex-specific reservoir of TLR7 ligands in SLE
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Genetic analysis of iris pigmentation in Swiss pig breeds identifies a missense KITLG variant as a potential causal factor for pale and heterochromatic irises
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DNA sequence contamination analyzer (DNASCAN): a supervised analysis toolkit for detecting and removing DNA contaminants
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Capturing resilience from phenotypic deviations: a case study using feed consumption and whole genome data in pigs
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inferred← citeshttps://doi.org/10.1186/s12915-020-00905-1openalex-snapshot
Genome-scale CRISPR screening at high sensitivity with an empirically designed sgRNA library
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Novel high-resolution targeted sequencing of the cervicovaginal microbiome
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A comparative meta-proteomic pipeline for the identification of plasmodesmata proteins and regulatory conditions in diverse plant species
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Sirtuins and regulatory miRNAs as epigenetic determinants of empagliflozin-mediated recovery after acute myocardial infarction
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Insulin-degrading enzyme (IDE) as a modulator of microglial phenotypes in the context of Alzheimer’s disease and brain aging
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Functional analysis of the zinc finger modules of the Saccharomyces cerevisiae splicing factor Luc7
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Environmental and epigenetic regulation of Rider retrotransposons in tomato
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Transcriptome profiling indicates varied gene responses to Pasteurella multocida mutant infections in cattle
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HNF1B Alters an Evolutionarily Conserved Nephrogenic Program of Target Genes
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LTRpred: de novo annotation of intact retrotransposons
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Rattus norvegicus reference genome evaluation for hippocampus RNA-seq data analysis
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Sexual Dimorphism in Growth Rate and Gene Expression Throughout Immature Development in Wild Type Chrysomya rufifacies (Diptera: Calliphoridae) Macquart
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Expression Profiles and Interaction of MicroRNA and Transcripts in Response to Bovine Leukemia Virus Exposure
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Selection Signatures in the Genome of Dzhalgin Merino Sheep Breed
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inferred← citeshttps://doi.org/10.3390/plants10091870openalex-snapshot
The Arabinogalactan Protein Family of Centaurium erythraea Rafn
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Genome-wide association studies to identify quantitative trait loci and positional candidate genes affecting meat quality-related traits in pigs
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Additional file 1 of ORFik: a comprehensive R toolkit for the analysis of translation
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254178openalex-snapshot
Additional file 10 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254187openalex-snapshot
Additional file 11 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
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Additional file 12 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
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Additional file 13 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
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Additional file 14 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
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Additional file 15 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
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Additional file 16 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
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Additional file 17 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
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Additional file 18 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254247openalex-snapshot
Additional file 19 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
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Additional file 1 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254265openalex-snapshot
Additional file 20 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
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Additional file 21 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254286openalex-snapshot
Additional file 22 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254289openalex-snapshot
Additional file 2 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254295openalex-snapshot
Additional file 3 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254298openalex-snapshot
Additional file 4 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254304openalex-snapshot
Additional file 5 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254307openalex-snapshot
Additional file 6 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254310openalex-snapshot
Additional file 7 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254313openalex-snapshot
Additional file 8 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.17254319openalex-snapshot
Additional file 9 of Novel high-resolution targeted sequencing of the cervicovaginal microbiome
inferred← citeshttps://doi.org/10.6084/m9.figshare.25347176openalex-snapshot
Additional file 1 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.25347205openalex-snapshot
Additional file 2 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.26625490openalex-snapshot
Additional file 1 of Insulin-degrading enzyme (IDE) as a modulator of microglial phenotypes in the context of Alzheimer’s disease and brain aging
inferred← citeshttps://doi.org/10.6084/m9.figshare.26625493openalex-snapshot
Additional file 2 of Insulin-degrading enzyme (IDE) as a modulator of microglial phenotypes in the context of Alzheimer’s disease and brain aging
inferred← citeshttps://doi.org/10.6084/m9.figshare.26625496openalex-snapshot
Additional file 3 of Insulin-degrading enzyme (IDE) as a modulator of microglial phenotypes in the context of Alzheimer’s disease and brain aging
inferred← citeshttps://doi.org/10.6084/m9.figshare.26688971openalex-snapshot
Additional file 3 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.26688974openalex-snapshot
Additional file 4 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.26688977openalex-snapshot
Additional file 5 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.26688980openalex-snapshot
Additional file 6 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.26688983openalex-snapshot
Additional file 7 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.26688986openalex-snapshot
Additional file 8 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.26688989openalex-snapshot
Additional file 9 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.26688992openalex-snapshot
Additional file 10 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.26688995openalex-snapshot
Additional file 11 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.6084/m9.figshare.26688998openalex-snapshot
Additional file 12 of Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance
inferred← citeshttps://doi.org/10.64898/2026.01.19.700337openalex-snapshot
Neuronal late endosomes serve as selective RNA hubs disrupted by ALS-linked FUS mutation
inferred← citeshttps://doi.org/10.64898/2026.04.27.720984openalex-snapshot
Regulatory innovation and transcriptome turnover drive the evolution of multicellularity in brown algae
inferred← citeshttps://doi.org/10.64898/2026.06.11.26355452openalex-snapshot
Genome-wide association and multi-omics functional screens reveal the genetic architecture of foveal development
inferred← citeshttps://doi.org/10.64898/2026.06.14.732179openalex-snapshot
Mitochondrial Complex I Modulator Restores Network Resilience in Advanced Alzheimer’s Disease Through Metabolic Reprogramming
inferred← citeshttps://doi.org/10.64898/2026.09.02.748925openalex-snapshot
Systematic CRISPRi perturbation of 1,408 autism risk genes maps multilevel transcriptional convergence in human cortical neurons
inferred← citeshttps://doi.org/10.70675/9737e722zaf37z4230zb1ccz0773f2ecaa94openalex-snapshot
Rôle des altérations génomiques et épigénomiques dans les mécanismes moléculaires à l’origine des pathologies associées aux maladies rares du métabolisme de la vitamine B12
inferred← citeshttps://doi.org/10.7287/peerj.8192v0.1/reviews/1openalex-snapshot
Peer Review #1 of "TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.8192v0.1/reviews/2openalex-snapshot
Peer Review #2 of "TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.8192v0.2/reviews/1openalex-snapshot
Peer Review #1 of "TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.8192v0.2/reviews/2openalex-snapshot
Peer Review #2 of "TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.8192openalex-snapshot
TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.