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MinIONQC: fast and simple quality control for MinION sequencing data
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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ggplot2: Elegant Graphics for Data Analysis
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Nanopore sequencing and assembly of a human genome with ultra-long reads
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Development and Application of Bacillus Thuringiensis Var. Israelensis Serotype H 14 as an Effective Biological Control Agent Against Mosquitoes in Israel
inferredcites →https://doi.org/10.1038/s41598-017-07650-6openalex-snapshot
Rapid de novo assembly of the European eel genome from nanopore sequencing reads
inferredcites →https://doi.org/10.1093/bioinformatics/btp163openalex-snapshot
Biopython: freely available Python tools for computational molecular biology and bioinformatics
inferredcites →https://doi.org/10.1093/bioinformatics/btu555openalex-snapshot
Poretools: a toolkit for analyzing nanopore sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu590openalex-snapshot
poRe: an R package for the visualization and analysis of nanopore sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btx136openalex-snapshot
poRe GUIs for parallel and real-time processing of MinION sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/bty149openalex-snapshot
NanoPack: visualizing and processing long-read sequencing data
inferredcites →https://doi.org/10.1093/gigascience/gix063openalex-snapshot
De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod ( Maccullochella peelii ), from Illumina and Nanopore sequencing read
inferredcites →https://doi.org/10.1093/gigascience/gix137openalex-snapshot
Finding Nemo: hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish ( Amphiprion ocellaris ) genome assembly
inferredcites →https://doi.org/10.1105/tpc.17.00521openalex-snapshot
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing
inferredcites →https://doi.org/10.18637/jss.v021.i12openalex-snapshot
Reshaping Data with the reshape Package
inferredcites →https://doi.org/10.18637/jss.v040.i01openalex-snapshot
The Split-Apply-Combine Strategy for Data Analysis
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1177/15353702221118091openalex-snapshot
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inferred← citeshttps://doi.org/10.1177/15353702231190931openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12859-020-03751-8openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12864-024-10594-7openalex-snapshot
Comparative genomic analysis of nickel homeostasis in cable bacteria
inferred← citeshttps://doi.org/10.1186/s12864-025-12018-6openalex-snapshot
Genomic analyses of Purpureocillium lilacinum reveal unique DNA regions for developing isolate-specific molecular markers
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inferred← citeshttps://doi.org/10.1186/s13073-023-01159-6openalex-snapshot
Genomic analysis of the international high-risk clonal lineage Klebsiella pneumoniae sequence type 395
inferred← citeshttps://doi.org/10.1186/s40793-025-00704-7openalex-snapshot
Impact of microbiological molecular methodologies on adaptive sampling using nanopore sequencing in metagenomic studies
inferred← citeshttps://doi.org/10.12688/f1000research.171593.1openalex-snapshot
Analysis of skin mycobiota associated with alopecia in captive cynomolgus macaques (Macaca fascicularis) based on Oxford Nanopore Technologies
inferred← citeshttps://doi.org/10.1371/journal.pntd.0014130openalex-snapshot
Hunting for Helminths: short- and long-read shotgun metagenomics for helminth detection in faecal samples
inferred← citeshttps://doi.org/10.1371/journal.pone.0278609openalex-snapshot
Nanopore sequencing data analysis using Microsoft Azure cloud computing service
inferred← citeshttps://doi.org/10.1371/journal.ppat.1012122openalex-snapshot
Characterization and genomic analysis of the Lyme disease spirochete bacteriophage ϕBB-1
inferred← citeshttps://doi.org/10.1534/g3.119.400864openalex-snapshot
LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
inferred← citeshttps://doi.org/10.1534/g3.120.401550openalex-snapshot
Solyntus, the New Highly Contiguous Reference Genome for Potato (Solanum tuberosum)
inferred← citeshttps://doi.org/10.18097/bmcrm00131openalex-snapshot
Processing Oxford Nanopore Long Reads Using Amazon Web Services
inferred← citeshttps://doi.org/10.18097/bmcrm00300openalex-snapshot
The Impact of Sequencing Depth on the Number of Transcript Splice Variants Revealed by MinION Nanopore Sequencing
inferred← citeshttps://doi.org/10.21105/joss.01236openalex-snapshot
pycoQC, interactive quality control for Oxford Nanopore Sequencing
inferred← citeshttps://doi.org/10.21105/joss.02991openalex-snapshot
Nanoq: ultra-fast quality control for nanopore reads
inferred← citeshttps://doi.org/10.21203/rs.3.pex-1409/v1openalex-snapshot
Nanopore long-read RNA-seq and absolute quantification delineate transcription dynamics in early embryo development of an insect pest
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2607942/v1openalex-snapshot
3’ end hydrolysis activity of the Bst polymerase enables rapid and sensitive identification of SARS-CoV-2 variants
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3355750/v1openalex-snapshot
The characteristics of vaginal microbiome comparing pre- and post-testosterone treatment in transgender men
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3689023/v1openalex-snapshot
DNA characterization reveals potential operon-unit packaging of extracellular vesicle cargo from a gut bacterial symbiont
inferred← citeshttps://doi.org/10.2139/ssrn.6537218openalex-snapshot
Biodegradation potential of bacteria from West Greenland soil samples towards aliphatic polyesters
inferred← citeshttps://doi.org/10.2217/pgs-2019-0080openalex-snapshot
Nanopore Sequencing of the Pharmacogene CYP2D6 Allows Simultaneous Haplotyping and Detection of Duplications
inferred← citeshttps://doi.org/10.26686/wgtn.17151464openalex-snapshot
Analysis of gene expression and DNA methylation in a cognitive phenotype model of schizophrenia
inferred← citeshttps://doi.org/10.26686/wgtn.17151464.v1openalex-snapshot
Analysis of gene expression and DNA methylation in a cognitive phenotype model of schizophrenia
inferred← citeshttps://doi.org/10.33425/2993-6799.1005openalex-snapshot
Surveillance of Emerging SARS-CoV-2 Variants by Nanopore Technology based Genome Sequencing
inferred← citeshttps://doi.org/10.3389/fcimb.2025.1545032openalex-snapshot
Custom barcoded primers for influenza A nanopore sequencing: enhanced performance with reduced preparation time
inferred← citeshttps://doi.org/10.3389/fcimb.2025.1701570openalex-snapshot
Nanopore sequencing in veterinary medicine: from concepts to clinical applications
inferred← citeshttps://doi.org/10.3389/fgene.2020.00211openalex-snapshot
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets
inferred← citeshttps://doi.org/10.3389/fgene.2025.1661527openalex-snapshot
Clarifying species boundaries between bocachico (Prochilodus magdalenae) and bocachico de Maracaibo (Prochilodus reticulatus) (characiformes: Prochilodontidae) using complete mitochondrial genomes
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1036643openalex-snapshot
Development of sequencing-based methodologies to distinguish viable from non-viable cells in a bovine milk matrix: A pilot study
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1305338openalex-snapshot
Whole genome sequencing and characterization of Pantoea agglomerans DBM 3797, endophyte, isolated from fresh hop (Humulus lupulus L.)
inferred← citeshttps://doi.org/10.3389/fpls.2020.00624openalex-snapshot
A Chromosome-Scale Assembly of the Garden Orach (Atriplex hortensis L.) Genome Using Oxford Nanopore Sequencing
inferred← citeshttps://doi.org/10.3389/pore.2024.1611676openalex-snapshot
Can long-read sequencing tackle the barriers, which the next-generation could not? A review
inferred← citeshttps://doi.org/10.3390/agriculture15060658openalex-snapshot
Gypsum and Tillage Practices for Combating Soil Salinity and Enhancing Crop Productivity
inferred← citeshttps://doi.org/10.3390/antibiotics14121238openalex-snapshot
Genomic Characterization of NDM-1 Producer Providencia stuartii Isolated in Russia
inferred← citeshttps://doi.org/10.3390/biology12121494openalex-snapshot
Comparison of Alternative Splicing Landscapes Revealed by Long-Read Sequencing in Hepatocyte-Derived HepG2 and Huh7 Cultured Cells and Human Liver Tissue
inferred← citeshttps://doi.org/10.3390/biomedinformatics5020027openalex-snapshot
A Tutorial Toolbox to Simplify Bioinformatics and Biostatistics Analyses of Microbial Omics Data in an Island Context
inferred← citeshttps://doi.org/10.3390/cells12091240openalex-snapshot
Exploration of the Gut Microbiome in Thai Patients with Major Depressive Disorder Shows a Specific Bacterial Profile with Depletion of the Ruminococcus Genus as a Putative Biomarker
inferred← citeshttps://doi.org/10.3390/genes10090659openalex-snapshot
Rapid and Cost-Efficient Enterovirus Genotyping from Clinical Samples Using Flongle Flow Cells
inferred← citeshttps://doi.org/10.3390/genes15081029openalex-snapshot
De Novo Genome Assembly of Toniniopsis dissimilis (Ramalinaceae, Lecanoromycetes) from Long Reads Shows a Comparatively High Composition of Biosynthetic Genes Putatively Involved in Melanin Synthesis
inferred← citeshttps://doi.org/10.3390/ijms26178685openalex-snapshot
Disruption of Human Papillomavirus 16 E6/E7 Genes Using All-in-One Adenovirus Vectors Expressing Eight Double-Nicking Guide RNAs
inferred← citeshttps://doi.org/10.3390/insects16010002openalex-snapshot
The Impact of Oxford Nanopore Technologies Based Methodologies on the Genome Sequencing and Assembly of Romanian Strains of Drosophila suzukii
inferred← citeshttps://doi.org/10.3390/microorganisms10040698openalex-snapshot
Breaking the Restriction Barriers and Applying CRISPRi as a Gene Silencing Tool in Pseudoclostridium thermosuccinogenes
inferred← citeshttps://doi.org/10.3390/microorganisms10102034openalex-snapshot
Molecular Epidemiology of mcr-1-Positive Escherichia coli and Klebsiella pneumoniae Isolates: Results from Russian Sentinel Surveillance (2013–2018)
inferred← citeshttps://doi.org/10.3390/plants11050635openalex-snapshot
Transcriptomic Reprogramming, Alternative Splicing and RNA Methylation in Potato (Solanum tuberosum L.) Plants in Response to Potato Virus Y Infection
inferred← citeshttps://doi.org/10.3390/plants11162156openalex-snapshot
Establishing MinION Sequencing and Genome Assembly Procedures for the Analysis of the Rooibos (Aspalathus linearis) Genome
inferred← citeshttps://doi.org/10.3390/polym14173583openalex-snapshot
Oral Microbiome in Orthodontic Acrylic Retainer
inferred← citeshttps://doi.org/10.3390/pr9071196openalex-snapshot
Diversity and Evolution of Clostridium beijerinckii and Complete Genome of the Type Strain DSM 791T
inferred← citeshttps://doi.org/10.3390/v12101136openalex-snapshot
Characterization of Emerging Swine Viral Diseases through Oxford Nanopore Sequencing Using Senecavirus A as a Model
inferred← citeshttps://doi.org/10.3390/v14081620openalex-snapshot
Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory
inferred← citeshttps://doi.org/10.3390/v15020587openalex-snapshot
Bioinformatic Tools for NGS-Based Metagenomics to Improve the Clinical Diagnosis of Emerging, Re-Emerging and New Viruses
inferred← citeshttps://doi.org/10.3390/v15061248openalex-snapshot
Direct Nanopore Sequencing of Human Cytomegalovirus Genomes from High-Viral-Load Clinical Samples
inferred← citeshttps://doi.org/10.3892/br.2024.1790openalex-snapshot
Bacterial classification based on metagenomic analysis in peritoneal dialysis effluent of patients with chronic kidney disease
inferred← citeshttps://doi.org/10.4103/1995-7645.380720openalex-snapshot
Surveillance of emerging SARS-CoV-2 variants by nanopore technology-based genome sequencing
inferred← citeshttps://doi.org/10.5582/bst.2024.01393openalex-snapshot
Comparative analysis of human gut bacterial microbiota between shallow shotgun metagenomic sequencing and full-length 16S rDNA amplicon sequencing
inferred← citeshttps://doi.org/10.58837/chula.the.2022.227openalex-snapshot
Classification of bacteria and fungi in peritoneal dialysis fluids of patients with chronic kidney disease based on metagenomic analysis
inferred← citeshttps://doi.org/10.5958/0975-6892.2023.00039.4openalex-snapshot
Genetic diversity and population structure of Aconitum heterophyllum- an endangered plant from North-western Himalayas using microsatellite markers
inferred← citeshttps://doi.org/10.6084/m9.figshare.13040947openalex-snapshot
Additional file 1 of SequelTools: a suite of tools for working with PacBio Sequel raw sequence data
inferred← citeshttps://doi.org/10.6084/m9.figshare.20688657openalex-snapshot
Additional file 3 of An efficient CRISPR-Cas9 enrichment sequencing strategy for characterizing complex and highly duplicated genomic regions. A case study in the Prunus salicina LG3-MYB10 genes cluster
inferred← citeshttps://doi.org/10.6084/m9.figshare.20688660openalex-snapshot
Additional file 4 of An efficient CRISPR-Cas9 enrichment sequencing strategy for characterizing complex and highly duplicated genomic regions. A case study in the Prunus salicina LG3-MYB10 genes cluster
inferred← citeshttps://doi.org/10.6084/m9.figshare.20688669openalex-snapshot
Additional file 6 of An efficient CRISPR-Cas9 enrichment sequencing strategy for characterizing complex and highly duplicated genomic regions. A case study in the Prunus salicina LG3-MYB10 genes cluster
inferred← citeshttps://doi.org/10.6084/m9.figshare.20688675openalex-snapshot
Additional file 8 of An efficient CRISPR-Cas9 enrichment sequencing strategy for characterizing complex and highly duplicated genomic regions. A case study in the Prunus salicina LG3-MYB10 genes cluster
inferred← citeshttps://doi.org/10.6084/m9.figshare.22610630openalex-snapshot
Additional file 2 of Genomic analysis of the international high-risk clonal lineage Klebsiella pneumoniae sequence type 395
inferred← citeshttps://doi.org/10.6084/m9.figshare.22610633openalex-snapshot
Additional file 3 of Genomic analysis of the international high-risk clonal lineage Klebsiella pneumoniae sequence type 395
inferred← citeshttps://doi.org/10.6084/m9.figshare.22610636openalex-snapshot
Additional file 4 of Genomic analysis of the international high-risk clonal lineage Klebsiella pneumoniae sequence type 395
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