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The Impact of Oxford Nanopore Technologies Based Methodologies on the Genome Sequencing and Assembly of Romanian Strains of Drosophila suzukii
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/cpz1.323openalex-snapshot
BUSCO: Assessing Genomic Data Quality and Beyond
inferredcites →https://doi.org/10.1002/ps.2265openalex-snapshot
A historic account of the invasion of Drosophila suzukii (Matsumura) (Diptera: Drosophilidae) in the continental United States, with remarks on their identification
inferredcites →https://doi.org/10.1007/s10340-015-0681-zopenalex-snapshot
Invasion biology of spotted wing Drosophila (Drosophila suzukii): a global perspective and future priorities
inferredcites →https://doi.org/10.1016/j.bdq.2015.02.001openalex-snapshot
Assessing the performance of the Oxford Nanopore Technologies MinION
inferredcites →https://doi.org/10.1016/j.csbj.2023.03.038openalex-snapshot
Benchmarking of Nanopore R10.4 and R9.4.1 flow cells in single-cell whole-genome amplification and whole-genome shotgun sequencing
inferredcites →https://doi.org/10.1016/j.gpb.2016.05.004openalex-snapshot
Oxford Nanopore MinION Sequencing and Genome Assembly
inferredcites →https://doi.org/10.1038/nbt.4060openalex-snapshot
Nanopore sequencing and assembly of a human genome with ultra-long reads
inferredcites →https://doi.org/10.1038/s41598-020-67373-zopenalex-snapshot
Near-chromosome level genome assembly of the fruit pest Drosophila suzukii using long-read sequencing
inferredcites →https://doi.org/10.1073/pnas.1811498116openalex-snapshot
Transposable elements drive rapid phenotypic variation in Capsella rubella
inferredcites →https://doi.org/10.1093/bioinformatics/btt476openalex-snapshot
The MaSuRCA genome assembler
inferredcites →https://doi.org/10.1093/bioinformatics/bty266openalex-snapshot
Versatile genome assembly evaluation with QUAST-LG
inferredcites →https://doi.org/10.1093/bioinformatics/bty654openalex-snapshot
MinIONQC: fast and simple quality control for MinION sequencing data
inferredcites →https://doi.org/10.1093/gigascience/giz038openalex-snapshot
De novo assembly of the Indian blue peacock (Pavo cristatus) genome using Oxford Nanopore technology and Illumina sequencing
inferredcites →https://doi.org/10.1093/molbev/msaa098openalex-snapshot
A Whole-Genome Scan for Association with Invasion Success in the Fruit Fly Drosophila suzukii Using Contrasts of Allele Frequencies Corrected for Population Structure
inferredcites →https://doi.org/10.1093/molbev/msab048openalex-snapshot
Behavioral and Genomic Sensory Adaptations Underlying the Pest Activity of Drosophila suzukii
inferredcites →https://doi.org/10.1093/molbev/msab155openalex-snapshot
The Worldwide Invasion of Drosophila suzukii Is Accompanied by a Large Increase of Transposable Element Load and a Small Number of Putatively Adaptive Insertions
inferredcites →https://doi.org/10.1093/nar/gkt282openalex-snapshot
BLAST: a more efficient report with usability improvements
inferredcites →https://doi.org/10.1098/rsbl.2016.0407openalex-snapshot
Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies
inferredcites →https://doi.org/10.1099/mgen.0.000936openalex-snapshot
Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae
inferredcites →https://doi.org/10.1101/2020.06.03.131474openalex-snapshot
Rapid detection of SARS-CoV-2 and other respiratory viruses by using LAMP method with Nanopore Flongle workflow
inferredcites →https://doi.org/10.1101/2024.09.23.614313openalex-snapshot
dScaff – an automatic bioinformatics framework for scaffolding draft de novo assemblies based on reference genome data
inferredcites →https://doi.org/10.1101/gr.215087.116openalex-snapshot
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
inferredcites →https://doi.org/10.1111/1365-2435.13317openalex-snapshot
Biological invasion: The influence of the hidden side of the (epi)genome
inferredcites →https://doi.org/10.1111/j.1439-0418.2010.01583.xopenalex-snapshot
First records of the potential pest species Drosophila suzukii (Diptera: Drosophilidae) in Europe
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/s12915-019-0734-5openalex-snapshot
Long live the king: chromosome-level assembly of the lion (Panthera leo) using linked-read, Hi-C, and long-read data
inferredcites →https://doi.org/10.1371/journal.pone.0174318openalex-snapshot
Global potential distribution of Drosophila suzukii (Diptera, Drosophilidae)
inferredcites →https://doi.org/10.1371/journal.pone.0188350openalex-snapshot
Improved capture of Drosophila suzukii by a trap baited with two attractants in the same device
inferredcites →https://doi.org/10.1534/g3.113.008185openalex-snapshot
Genome of Drosophila suzukii, the Spotted Wing Drosophila
inferredcites →https://doi.org/10.1534/g3.118.200160openalex-snapshot
Highly Contiguous Genome Assemblies of 15 Drosophila Species Generated Using Nanopore Sequencing
inferredcites →https://doi.org/10.1534/g3.118.200162openalex-snapshot
Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing
inferredcites →https://doi.org/10.32614/cran.package.ggpubropenalex-snapshot
ggpubr: 'ggplot2' Based Publication Ready Plots
inferredcites →https://doi.org/10.32614/cran.package.ggrepelopenalex-snapshot
ggrepel: Automatically Position Non-Overlapping Text Labels with 'ggplot2'
inferredcites →https://doi.org/10.32614/cran.package.rstatixopenalex-snapshot
rstatix: Pipe-Friendly Framework for Basic Statistical Tests
inferredcites →https://doi.org/10.3389/fmicb.2022.822402openalex-snapshot
Ultrafast and Cost-Effective Pathogen Identification and Resistance Gene Detection in a Clinical Setting Using Nanopore Flongle Sequencing
inferredcites →https://doi.org/10.3390/genes10060419openalex-snapshot
On the Population Dynamics of Junk: A Review on the Population Genomics of Transposable Elements
inferredcites →https://doi.org/10.3390/genes10090659openalex-snapshot
Rapid and Cost-Efficient Enterovirus Genotyping from Clinical Samples Using Flongle Flow Cells
inferredcites →https://doi.org/10.3390/ijms232314892openalex-snapshot
ONT-Based Alternative Assemblies Impact on the Annotations of Unique versus Repetitive Features in the Genome of a Romanian Strain of Drosophila melanogaster
inferredcites →https://doi.org/10.3390/insects11090621openalex-snapshot
Population Dynamics of Drosophila suzukii in Coastal and Mainland Sweet Cherry Orchards of Greece
inferredcites →https://doi.org/10.3390/insects11110751openalex-snapshot
Modelling Drosophila suzukii Adult Male Populations: A Physiologically Based Approach with Validation
inferredcites →https://doi.org/10.3390/insects9040145openalex-snapshot
Overwintered Drosophila suzukii Are the Main Source for Infestations of the First Fruit Crops of the Season
inferredcites →https://doi.org/10.3390/v13081424openalex-snapshot
Application of Oxford Nanopore Technology to Plant Virus Detection
inferredcites →https://doi.org/10.5281/zenodo.10739472openalex-snapshot
First record of the spotted wing Drosophila Drosophila suzukii (Diptera: Drosophilidae) in Romania.
inferredcites →https://doi.org/10.52846/aamc.v53i1.1485openalex-snapshot
BIOLOGY AND BEHAVIOR OF DROSOPHILA SUZUKII: THE KEY TO EFFICIENT HABITAT MANAGEMENT IN AGRICULTURAL CROPS
inferredcites →https://doi.org/10.7554/elife.98300.3openalex-snapshot
Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.3897/neobiota.107.176004zenodo-depositor-declared
Temporal genomics unravels demographic and selective invasion dynamics of Drosophila suzukii at a European range edge
inferred← citeshttps://doi.org/10.3390/insects16060591openalex-snapshot
Short-Term Evolutionary Features and Circadian Clock-Modulated Gene Expression Analysis of Piezo, nanchung, and αTubulin at 67C in a Romanian Population of Drosophila suzukii
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