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Building a large gene expression-cancer knowledge base with limited human annotations
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/ajmg.a.36101openalex-snapshot
The AKT genes and their roles in various disorders
inferredcites →https://doi.org/10.1007/s12687-017-0331-7openalex-snapshot
The challenges of the expanded availability of genomic information: an agenda-setting paper
inferredcites →https://doi.org/10.1007/s40291-013-0077-9openalex-snapshot
Prognostic and Predictive Biomarkers: Tools in Personalized Oncology
inferredcites →https://doi.org/10.1016/b978-1-55860-335-6.50026-xopenalex-snapshot
Heterogeneous Uncertainty Sampling for Supervised Learning
inferredcites →https://doi.org/10.1016/c2011-0-06130-6openalex-snapshot
Principles of Data Integration
inferredcites →https://doi.org/10.1038/312646a0openalex-snapshot
Participation of p53 cellular tumour antigen in transformation of normal embryonic cells
inferredcites →https://doi.org/10.1038/ng.2764openalex-snapshot
The Cancer Genome Atlas Pan-Cancer analysis project
inferredcites →https://doi.org/10.1038/nm0697-614openalex-snapshot
The proto-oncogene Bcl-2 and its role in regulating apoptosis
inferredcites →https://doi.org/10.1038/nrd.2017.226openalex-snapshot
Drug development in the era of precision medicine
inferredcites →https://doi.org/10.1038/s41598-021-84211-yopenalex-snapshot
Identifying gene expression patterns associated with drug-specific survival in cancer patients
inferredcites →https://doi.org/10.1073/pnas.211430998openalex-snapshot
AKT plays a central role in tumorigenesis
inferredcites →https://doi.org/10.1093/annonc/mdu217openalex-snapshot
Delivering precision medicine in oncology today and in future—the promise and challenges of personalised cancer medicine: a position paper by the European Society for Medical Oncology (ESMO)
inferredcites →https://doi.org/10.1093/bib/bbw114openalex-snapshot
Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences
inferredcites →https://doi.org/10.1093/bioinformatics/btv760openalex-snapshot
Beyond accuracy: creating interoperable and scalable text-mining web services
inferredcites →https://doi.org/10.1093/database/baad061openalex-snapshot
Building a large gene expression-cancer knowledge base with limited human annotations
inferredcites →https://doi.org/10.1093/database/bar026openalex-snapshot
International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data
inferredcites →https://doi.org/10.1093/database/bay045openalex-snapshot
DEXTER: Disease-Expression Relation Extraction from Text
inferredcites →https://doi.org/10.1093/hmg/ddm056openalex-snapshot
miRNAs in cancer: approaches, aetiology, diagnostics and therapy
inferredcites →https://doi.org/10.1093/nar/gkh061openalex-snapshot
The Unified Medical Language System (UMLS): integrating biomedical terminology
inferredcites →https://doi.org/10.1093/nar/gkq1237openalex-snapshot
Entrez Gene: gene-centered information at NCBI
inferredcites →https://doi.org/10.1093/nar/gkt441openalex-snapshot
PubTator: a web-based text mining tool for assisting biocuration
inferredcites →https://doi.org/10.1093/nar/gku368openalex-snapshot
OncoSearch: cancer gene search engine with literature evidence
inferredcites →https://doi.org/10.1093/nar/gkv1337openalex-snapshot
MERAV: a tool for comparing gene expression across human tissues and cell types
inferredcites →https://doi.org/10.1093/nar/gkx907openalex-snapshot
BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery
inferredcites →https://doi.org/10.1093/nar/gkz1021openalex-snapshot
The DisGeNET knowledge platform for disease genomics: 2019 update
inferredcites →https://doi.org/10.1093/nar/gkz389openalex-snapshot
PubTator central: automated concept annotation for biomedical full text articles
inferredcites →https://doi.org/10.1101/2022.04.14.488416openalex-snapshot
BioAct: Biomedical Knowledge Base Construction using Active Learning
inferredcites →https://doi.org/10.1109/tkde.2020.2981314openalex-snapshot
A Survey on Deep Learning for Named Entity Recognition
inferredcites →https://doi.org/10.1109/tkde.2021.3117715openalex-snapshot
Entity Linking Meets Deep Learning: Techniques and Solutions
inferredcites →https://doi.org/10.1126/science.2470152openalex-snapshot
Studies of the HER-2/ neu Proto-Oncogene in Human Breast and Ovarian Cancer
inferredcites →https://doi.org/10.1126/science.2649981openalex-snapshot
Chromosome 17 Deletions and p53 Gene Mutations in Colorectal Carcinomas
inferredcites →https://doi.org/10.1126/science.3500513openalex-snapshot
Epidermal-Growth-Factor-Dependent Transformation by a Human EGF Receptor Proto-Oncogene
inferredcites →https://doi.org/10.1145/3241741openalex-snapshot
Relation Extraction Using Distant Supervision
inferredcites →https://doi.org/10.1145/3487553.3524212openalex-snapshot
On Reliability Scores for Knowledge Graphs
inferredcites →https://doi.org/10.1145/3514221.3526049openalex-snapshot
Saga: A Platform for Continuous Construction and Serving of Knowledge at Scale
inferredcites →https://doi.org/10.1145/3539618.3591822openalex-snapshot
Searching for Reliable Facts over a Medical Knowledge Base
inferredcites →https://doi.org/10.1146/annurev-biochem-060308-103103openalex-snapshot
Regulation of mRNA Translation and Stability by microRNAs
inferredcites →https://doi.org/10.1186/1471-2105-14-323openalex-snapshot
CoMAGC: a corpus with multi-faceted annotations of gene-cancer relations
inferredcites →https://doi.org/10.1186/1471-2105-9-207openalex-snapshot
Extraction of semantic biomedical relations from text using conditional random fields
inferredcites →https://doi.org/10.1186/s12859-015-0472-9openalex-snapshot
Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research
inferredcites →https://doi.org/10.1186/s12859-022-04646-6openalex-snapshot
TBGA: a large-scale Gene-Disease Association dataset for Biomedical Relation Extraction
inferredcites →https://doi.org/10.1186/s12920-019-0514-7openalex-snapshot
GENT2: an updated gene expression database for normal and tumor tissues
inferredcites →https://doi.org/10.1200/cci.19.00117openalex-snapshot
OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data
inferredcites →https://doi.org/10.18653/v1/d19-1371openalex-snapshot
SciBERT: A Pretrained Language Model for Scientific Text
inferredcites →https://doi.org/10.18653/v1/n18-3011openalex-snapshot
Construction of the Literature Graph in Semantic Scholar
inferredcites →https://doi.org/10.3115/1690219.1690287openalex-snapshot
Distant supervision for relation extraction without labeled data
inferredcites →https://doi.org/10.3115/v1/d14-1164openalex-snapshot
Combining Distant and Partial Supervision for Relation Extraction
inferredcites →https://doi.org/10.3233/sw-140134openalex-snapshot
DBpedia – A large-scale, multilingual knowledge base extracted from Wikipedia
inferredcites →https://doi.org/10.3233/sw-222986openalex-snapshot
Neural entity linking: A survey of models based on deep learning
inferredcites →https://doi.org/10.3389/fcell.2020.00048openalex-snapshot
A Review of Precision Oncology Knowledgebases for Determining the Clinical Actionability of Genetic Variants
inferredcites →https://doi.org/10.3390/cancers11101618openalex-snapshot
A Comprehensive Review on MAPK: A Promising Therapeutic Target in Cancer
inferredcites →https://doi.org/10.4230/lipics.cosit.2022.18openalex-snapshot
AI-Assisted Pipeline for Dynamic Generation of Trustworthy Health Supplement Content at Scale
inferredcites →https://doi.org/10.48550/arxiv.1606.07993openalex-snapshot
Learning for Biomedical Information Extraction: Methodological Review of Recent Advances
inferredcites →https://doi.org/10.48550/arxiv.1705.03645openalex-snapshot
A Survey of Deep Learning Methods for Relation Extraction
inferredcites →https://doi.org/10.5281/zenodo.7576963openalex-snapshot
CORE: Gene Expression-Cancer Knowledge Base
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/s00799-025-00431-xopenalex-snapshot
Provenance-driven nanopublications: representing source lineage and trust networks for multi-source assertions
inferred← citeshttps://doi.org/10.1016/j.ipm.2025.104068openalex-snapshot
Amplifying commonsense knowledge via bi-directional relation integrated graph-based contrastive pre-training from large language models
inferred← citeshttps://doi.org/10.1186/s12859-024-05730-9openalex-snapshot
MetaTron: advancing biomedical annotation empowering relation annotation and collaboration
inferred← citeshttps://doi.org/10.26493/scores23openalex-snapshot
Proceedings of the 9th Student Computing Research Symposium
inferred← citeshttps://doi.org/10.26493/scores23.12openalex-snapshot
Sensitivity Analysis of Named Entity Extraction based on Deep Learning
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