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StrainInfo—the central database for linked microbial strain identifiers

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.heliyon.2023.e13314openalex-snapshot
StrainSelect: A novel microbiome reference database that disambiguates all bacterial strains, genome assemblies and extant cultures worldwide
inferredcites →https://doi.org/10.1016/j.syapm.2008.07.001openalex-snapshot
The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
inferredcites →https://doi.org/10.1016/j.syapm.2013.11.002openalex-snapshot
StrainInfo introduces electronic passports for microorganisms
inferredcites →https://doi.org/10.1016/j.syapm.2015.02.008openalex-snapshot
Significance and future role of microbial resource centers
inferredcites →https://doi.org/10.1038/s41587-020-0501-8openalex-snapshot
A complete domain-to-species taxonomy for Bacteria and Archaea
inferredcites →https://doi.org/10.1038/sdata.2016.18openalex-snapshot
The FAIR Guiding Principles for scientific data management and stewardship
inferredcites →https://doi.org/10.1093/database/baaa062openalex-snapshot
NCBI Taxonomy: a comprehensive update on curation, resources and tools
inferredcites →https://doi.org/10.1093/nar/gkaa1025openalex-snapshot
BRENDA, the ELIXIR core data resource in 2021: new developments and updates
inferredcites →https://doi.org/10.1093/nar/gkac1051openalex-snapshot
The European Nucleotide Archive in 2022
inferredcites →https://doi.org/10.1093/nar/gkad1044openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferredcites →https://doi.org/10.1093/nar/gkad903openalex-snapshot
GenBank 2024 Update
inferredcites →https://doi.org/10.1093/nar/gkae959openalex-snapshot
Bac Dive in 2025: the core database for prokaryotic strain data
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gkt1209openalex-snapshot
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
inferredcites →https://doi.org/10.1093/nar/gku1127openalex-snapshot
Type material in the NCBI Taxonomy Database
inferredcites →https://doi.org/10.1093/nar/gkw992openalex-snapshot
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
inferredcites →https://doi.org/10.1099/ijsem.0.004332openalex-snapshot
List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
inferredcites →https://doi.org/10.1099/ijsem.0.005585openalex-snapshot
International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2022 Revision)
inferredcites →https://doi.org/10.1101/gr.092759.109openalex-snapshot
Circos: An information aesthetic for comparative genomics
inferredcites →https://doi.org/10.1109/tkde.2005.131openalex-snapshot
Knowledge accumulation and resolution of data inconsistencies during the integration of microbial information sources
inferredcites →https://doi.org/10.1128/aem.01444-19openalex-snapshot
Public Microbial Resource Centers: Key Hubs for Findable, Accessible, Interoperable, and Reusable (FAIR) Microorganisms and Genetic Materials
inferredcites →https://doi.org/10.1186/1471-2164-14-933openalex-snapshot
Global catalogue of microorganisms (gcm): a comprehensive database and information retrieval, analysis, and visualization system for microbial resources

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/rio.12.e215133zenodo-depositor-declared
Second funding phase proposal: NFDI4Microbiota – National Research Data Infrastructure for Microbiota Research
inferred← citeshttps://doi.org/10.1038/s41564-026-02446-9openalex-snapshot
A roadmap to create FAIR collections of microbial strains
inferred← citeshttps://doi.org/10.1093/biosci/biag138openalex-snapshot
Connecting biodiversity biobanks in the global infrastructure landscape
inferred← citeshttps://doi.org/10.1093/nar/gkaf1247openalex-snapshot
SILVA in 2026: a global core biodata resource for rRNA within the DSMZ digital diversity
inferred← citeshttps://doi.org/10.1128/msystems.00619-26openalex-snapshot
Origin and transport of bacterial hopanoids
inferred← citeshttps://doi.org/10.64898/2026.02.27.708567openalex-snapshot
Inhibition of multidrug-resistant Staphylococcus aureus by commensal bacterial species from the human nose
inferred← citeshttps://doi.org/10.64898/2026.09.09.750348openalex-snapshot
The StrainDiscoveryDatabase: an open framework for standardized microbial strain data
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